FvH4_5g35810

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0003125
Physical Location & Seq
Forward (+)
26232103 .. 26233185
1083 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g35810.t1

Sequence Viewer

Length: 1083 bp
ATGGGTGAATTCGGATCTTGGATTCACCAGCCGCATGATCGGCGACCGCCCGATCCATATACCTTGGGTGCTCCTTTTGTCTTGGGGCAACAGAACTTCATTTCTGCATATAGAAACCCTGGCACTAGTATGCTGTTCACAAATGGAACTTTGCCAGTGTATGCATCATCTGGGTTGCCCCATCCACAAGTTGGCAGAGCAAATGAACCTCATGGTTGGTTCTATTGCTTGCCCAGTATCCAACAGGCATTCGTGCCTGCTACACACACTGTTCTCAAAGAGAAAGTTTCTACTTGCTCCTTCCAAGACCCTAAGGAGACATTGATACCCTGTGTAGACCCTGACAGTAAACAGAAGAGATTGCTTGTCAGCAATCCGTCAGGGGATCAAACAAGTTTGGTCTTTAATTCTGGAATAGTGAATCCTTTGCAGTGCCCTACTTCTTGGGATGGGTACCAACAAGGTGCATACCATGTGAATGGGAATGATCATGCATCTAATAGAGATTTTCCAAACCTCTCGGGAGCAATTTTGACTGATGAGTTTAAAGGAAATGATGAATCTGGTGCTGAAAGTGAGATGCATGAAGACACAGAAGAACTGAATGCATTGCTCTACTCAGATGATGAGAGCGACTATACCGAGGACGATGAAGTTACTAGCACAGGTCATTCCCCTAGTACAATGACAGTTCATGATAAGCAGAATTGGTTTGAAGCAAGGGATGAAGAAGTTGCTAGTTCTTGTGGAATAACTAAAAAGCGGAAGCTATTTGATGGAGGTTATGATGTGCCATCCATAATGGACACTGCAACTTCCAAGAATCCCGACAGATCAGCTGAGTTAGAGGATGATGCAGAATCCAGTTGTGCCCGCAACAGAAGTTCCGGGTCTAGAGAATTGGATTCCTTGTCCAGCAACAAGAAGATGAAAAAGGACAAGATACGCGAGACAGTGAGCGTTCTGCAGAACATAATTCCTGGTGTCAAGGGAAAAGATGCAATGGTGGTGCTCGATGAAGCCATCCTCTACCTAAATTTGCTGAAGGTTAAGGCCAAAGCTTTTGGACTCGAGTCTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

361

Amino Acids

39.64

Weight (kDa)

4.91

Isoelectric Point (pI)

42.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH_SAC51 PF23173 306 - 351 1.8e-13 Transcription factor SAC51 bHLH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 453
AccB1I GGYRCC 1 cut(s) 453
AccB7I CCANNNNNTGG 1 cut(s) 191
AccI GTMKAC 1 cut(s) 336
AccII CGCG 1 cut(s) 948
AciI CCGC 4 cut(s) 32, 47, 763, 874
AclWI GGATC 3 cut(s) 22, 47, 393
AcsI RAATTY 2 cut(s) 8, 1036
AcuI CTGAAG 1 cut(s) 1064
AfaI GTAC 2 cut(s) 455, 682
AfiI CCNNNNNNNGG 1 cut(s) 191
AgsI TTSAA 1 cut(s) 716
AhlI ACTAGT 1 cut(s) 125
AjnI CCWGG 2 cut(s) 118, 979
AluBI AGCT 3 cut(s) 769, 839, 1061
AluI AGCT 3 cut(s) 769, 839, 1061
Alw21I GWGCWC 2 cut(s) 73, 1014
Alw26I GTCTC 2 cut(s) 311, 944
AlwI GGATC 3 cut(s) 22, 47, 393
Ama87I CYCGRG 2 cut(s) 520, 1070
AoxI GGCC 1 cut(s) 1053
ApoI RAATTY 2 cut(s) 8, 1036
Asp718I GGTACC 1 cut(s) 453
AsuC2I CCSGG 1 cut(s) 889
AsuHPI GGTGA 2 cut(s) 17, 17
AvaI CYCGRG 2 cut(s) 520, 1070
AxyI CCTNAGG 1 cut(s) 312
BaeGI GKGCMC 2 cut(s) 437, 874
BanI GGYRCC 1 cut(s) 453
BbsI GAAGAC 1 cut(s) 594
Bbv12I GWGCWC 2 cut(s) 73, 1014
BccI CCATC 5 cut(s) 189, 443, 770, 802, 1031
BciT130I CCWGG 2 cut(s) 120, 981
BciVI GTATCC 1 cut(s) 248
BclI TGATCA 1 cut(s) 487
BcnI CCSGG 1 cut(s) 889
BcoDI GTCTC 2 cut(s) 311, 944
BcuI ACTAGT 1 cut(s) 125
BfaI CTAG 5 cut(s) 126, 660, 678, 738, 894
BfmI CTRYAG 1 cut(s) 965
BfuI GTATCC 1 cut(s) 248
BisI GCNGC 1 cut(s) 32
BlsI GCNGC 1 cut(s) 33
Bme1390I CCNGG 3 cut(s) 120, 889, 981
BmeT110I CYCGRG 2 cut(s) 520, 1070
BmiI GGNNCC 1 cut(s) 455
BmrFI CCNGG 3 cut(s) 120, 889, 981
BmrI ACTGGG 1 cut(s) 228
BmsI GCATC 5 cut(s) 173, 503, 570, 844, 988
BmuI ACTGGG 1 cut(s) 228
BoxI GACNNNNGTC 1 cut(s) 1072
BpiI GAAGAC 1 cut(s) 594
BpuMI CCSGG 1 cut(s) 889
BsaJI CCNNGG 3 cut(s) 63, 118, 642
Bsc4I CCNNNNNNNGG 1 cut(s) 191
Bse1I ACTGG 3 cut(s) 155, 234, 864
Bse21I CCTNAGG 1 cut(s) 312
Bse3DI GCAATG 2 cut(s) 608, 1008
BseBI CCWGG 2 cut(s) 120, 981
BseDI CCNNGG 3 cut(s) 63, 118, 642
BseGI GGATG 6 cut(s) 181, 454, 730, 794, 856, 1023
BseLI CCNNNNNNNGG 1 cut(s) 191
BseMI GCAATG 2 cut(s) 608, 1008
BseMII CTCAG 2 cut(s) 633, 831
BseNI ACTGG 3 cut(s) 155, 234, 864
BseSI GKGCMC 2 cut(s) 437, 874
Bsh1236I CGCG 1 cut(s) 948
Bsh1285I CGRYCG 1 cut(s) 47
BshFI GGCC 1 cut(s) 1055
BshNI GGYRCC 1 cut(s) 453
BsiEI CGRYCG 1 cut(s) 47
BsiHKAI GWGCWC 2 cut(s) 73, 1014
BsiHKCI CYCGRG 2 cut(s) 520, 1070
BsiSI CCGG 1 cut(s) 888
BslI CCNNNNNNNGG 1 cut(s) 191
BsmAI GTCTC 2 cut(s) 311, 944
BsmI GAATGC 2 cut(s) 248, 610
BsnI GGCC 1 cut(s) 1055
BsoBI CYCGRG 2 cut(s) 520, 1070
Bsp1286I GDGCHC 4 cut(s) 73, 437, 874, 1014
Bsp143I GATC 6 cut(s) 14, 37, 52, 385, 487, 833
BspACI CCGC 4 cut(s) 32, 47, 763, 874
BspANI GGCC 1 cut(s) 1055
BspCNI CTCAG 2 cut(s) 632, 832
BspFNI CGCG 1 cut(s) 948
BspHI TCATGA 1 cut(s) 694
BspLI GGNNCC 1 cut(s) 455
BspMAI CTGCAG 1 cut(s) 969
BspPI GGATC 3 cut(s) 22, 47, 393
BspT107I GGYRCC 1 cut(s) 453
BsrDI GCAATG 2 cut(s) 608, 1008
BsrI ACTGG 3 cut(s) 155, 234, 864
BssECI CCNNGG 3 cut(s) 63, 118, 642
BssMI GATC 6 cut(s) 14, 37, 52, 385, 487, 833
BssT1I CCWWGG 1 cut(s) 63
Bst2UI CCWGG 2 cut(s) 120, 981
Bst4CI ACNGT 4 cut(s) 271, 347, 691, 955
Bst6I CTCTTC 1 cut(s) 350
BstC8I GCNNGC 3 cut(s) 230, 258, 874
BstDEI CTNAG 3 cut(s) 312, 619, 840
BstF5I GGATG 6 cut(s) 181, 454, 730, 794, 856, 1023
BstFNI CGCG 1 cut(s) 948
BstKTI GATC 6 cut(s) 17, 40, 55, 388, 490, 836
BstMAI GTCTC 2 cut(s) 311, 944
BstMBI GATC 6 cut(s) 14, 37, 52, 385, 487, 833
BstMCI CGRYCG 1 cut(s) 47
BstMWI GCNNNNNNNGC 1 cut(s) 40
BstNI CCWGG 2 cut(s) 120, 981
BstPAI GACNNNNGTC 1 cut(s) 1072
BstSCI CCNGG 3 cut(s) 118, 887, 979
BstSFI CTRYAG 1 cut(s) 965
BstSLI GKGCMC 2 cut(s) 437, 874
BstUI CGCG 1 cut(s) 948
BstV2I GAAGAC 1 cut(s) 594
BstX2I RGATCY 1 cut(s) 14
BstXI CCANNNNNNTGG 1 cut(s) 479
BstYI RGATCY 1 cut(s) 14
Bsu36I CCTNAGG 1 cut(s) 312
BsuI GTATCC 1 cut(s) 248
BsuRI GGCC 1 cut(s) 1055
BtsCI GGATG 6 cut(s) 181, 454, 730, 794, 856, 1023
BtsI GCAGTG 2 cut(s) 437, 807
BtsIMutI CAGTG 5 cut(s) 162, 267, 437, 807, 960
Cac8I GCNNGC 3 cut(s) 230, 258, 874
CciI TCATGA 1 cut(s) 694
Csp6I GTAC 2 cut(s) 454, 681
CviAII CATG 6 cut(s) 35, 212, 473, 491, 584, 695
CviJI RGCY 6 cut(s) 31, 769, 839, 1022, 1055, 1061
CviKI_1 RGCY 6 cut(s) 31, 769, 839, 1022, 1055, 1061
CviQI GTAC 2 cut(s) 454, 681
DdeI CTNAG 3 cut(s) 312, 619, 840
DpnI GATC 6 cut(s) 16, 39, 54, 387, 489, 835
DpnII GATC 6 cut(s) 14, 37, 52, 385, 487, 833
DraI TTTAAA 1 cut(s) 547
Eam1104I CTCTTC 1 cut(s) 350
EarI CTCTTC 1 cut(s) 350
Eco130I CCWWGG 1 cut(s) 63
Eco57I CTGAAG 1 cut(s) 1064
Eco81I CCTNAGG 1 cut(s) 312
Eco88I CYCGRG 2 cut(s) 520, 1070
EcoRI GAATTC 1 cut(s) 8
EcoRII CCWGG 2 cut(s) 118, 979
EcoT14I CCWWGG 1 cut(s) 63
EcoT22I ATGCAT 4 cut(s) 166, 496, 585, 610
ErhI CCWWGG 1 cut(s) 63
FaeI CATG 6 cut(s) 38, 215, 476, 494, 587, 698
FatI CATG 6 cut(s) 34, 211, 472, 490, 583, 694
FauI CCCGC 1 cut(s) 881
FbaI TGATCA 1 cut(s) 487
FblI GTMKAC 1 cut(s) 336
Fnu4HI GCNGC 1 cut(s) 32
FokI GGATG 6 cut(s) 168, 461, 737, 781, 863, 1010
Fsp4HI GCNGC 1 cut(s) 32
FspBI CTAG 5 cut(s) 126, 660, 678, 738, 894
GluI GCNGC 1 cut(s) 32
HaeIII GGCC 1 cut(s) 1055
HapII CCGG 1 cut(s) 888
Hin1II CATG 6 cut(s) 38, 215, 476, 494, 587, 698
HindIII AAGCTT 1 cut(s) 1059
HinfI GANTC 8 cut(s) 22, 421, 560, 823, 860, 905, 1068, 1073
HpaII CCGG 1 cut(s) 888
HphI GGTGA 2 cut(s) 17, 17
Hpy166II GTNNAC 3 cut(s) 138, 337, 350
Hpy188I TCNGA 3 cut(s) 14, 622, 1082
Hpy188III TCNNGA 5 cut(s) 411, 522, 695, 827, 894
Hpy8I GTNNAC 3 cut(s) 138, 337, 350
HpyAV CCTTC 2 cut(s) 310, 1039
HpyCH4III ACNGT 4 cut(s) 271, 347, 691, 955
HpyF10VI GCNNNNNNNGC 1 cut(s) 40
HpyF3I CTNAG 3 cut(s) 312, 619, 840
Hsp92II CATG 6 cut(s) 38, 215, 476, 494, 587, 698
KpnI GGTACC 1 cut(s) 457
Ksp22I TGATCA 1 cut(s) 487
Kzo9I GATC 6 cut(s) 14, 37, 52, 385, 487, 833
LmnI GCTCC 3 cut(s) 76, 302, 524
LweI GCATC 5 cut(s) 173, 503, 570, 844, 988
MaeI CTAG 5 cut(s) 126, 660, 678, 738, 894
MaeIII GTNAC 1 cut(s) 655
MalI GATC 6 cut(s) 16, 39, 54, 387, 489, 835
MboI GATC 6 cut(s) 14, 37, 52, 385, 487, 833
MboII GAAGA 5 cut(s) 367, 599, 608, 740, 937
MflI RGATCY 1 cut(s) 14
MhlI GDGCHC 4 cut(s) 73, 437, 874, 1014
MluCI AATT 7 cut(s) 8, 406, 528, 706, 899, 975, 1036
MlyI GAGTC 2 cut(s) 1062, 1082
MmeI TCCRAC 1 cut(s) 265
MnlI CCTC 6 cut(s) 219, 527, 637, 773, 841, 1037
Mph1103I ATGCAT 4 cut(s) 166, 496, 585, 610
MseI TTAA 3 cut(s) 405, 546, 1050
MslI CAYNNNNRTG 2 cut(s) 128, 477
MspA1I CMGCKG 1 cut(s) 839
MspI CCGG 1 cut(s) 888
MspR9I CCNGG 3 cut(s) 120, 889, 981
Mva1269I GAATGC 2 cut(s) 248, 610
MvaI CCWGG 2 cut(s) 120, 981
MvnI CGCG 1 cut(s) 948
MwoI GCNNNNNNNGC 1 cut(s) 40
NciI CCSGG 1 cut(s) 889
NdeII GATC 6 cut(s) 14, 37, 52, 385, 487, 833
NlaIII CATG 6 cut(s) 38, 215, 476, 494, 587, 698
NlaIV GGNNCC 1 cut(s) 455
NsiI ATGCAT 4 cut(s) 166, 496, 585, 610
PaeR7I CTCGAG 1 cut(s) 1070
PagI TCATGA 1 cut(s) 694
PctI GAATGC 2 cut(s) 248, 610
PfeI GAWTC 6 cut(s) 22, 421, 560, 823, 860, 905
PflMI CCANNNNNTGG 1 cut(s) 191
PkrI GCNGC 1 cut(s) 33
PleI GAGTC 2 cut(s) 1062, 1081
PpsI GAGTC 2 cut(s) 1062, 1081
PshAI GACNNNNGTC 1 cut(s) 1072
Psp6I CCWGG 2 cut(s) 118, 979
PspGI CCWGG 2 cut(s) 118, 979
PspN4I GGNNCC 1 cut(s) 455
PspXI VCTCGAGB 1 cut(s) 1070
PstI CTGCAG 1 cut(s) 969
PsuI RGATCY 1 cut(s) 14
PvuII CAGCTG 1 cut(s) 839
RsaI GTAC 2 cut(s) 455, 682
RsaNI GTAC 2 cut(s) 454, 681
RseI CAYNNNNRTG 2 cut(s) 128, 477
SaqAI TTAA 3 cut(s) 405, 546, 1050
SatI GCNGC 1 cut(s) 32
Sau3AI GATC 6 cut(s) 14, 37, 52, 385, 487, 833
SchI GAGTC 2 cut(s) 1062, 1082
ScrFI CCNGG 3 cut(s) 120, 889, 981
SduI GDGCHC 4 cut(s) 73, 437, 874, 1014
SfaNI GCATC 5 cut(s) 173, 503, 570, 844, 988
SfcI CTRYAG 1 cut(s) 965
Sfr274I CTCGAG 1 cut(s) 1070
SlaI CTCGAG 1 cut(s) 1070
SmiMI CAYNNNNRTG 2 cut(s) 128, 477
SmlI CTYRAG 1 cut(s) 1070
SmoI CTYRAG 1 cut(s) 1070
SpeI ACTAGT 1 cut(s) 125
Sse9I AATT 7 cut(s) 8, 406, 528, 706, 899, 975, 1036
SsiI CCGC 4 cut(s) 32, 47, 763, 874
SspMI CTAG 5 cut(s) 126, 660, 678, 738, 894
StyD4I CCNGG 3 cut(s) 118, 887, 979
StyI CCWWGG 1 cut(s) 63
TaaI ACNGT 4 cut(s) 271, 347, 691, 955
TaqI TCGA 2 cut(s) 1014, 1071
TasI AATT 7 cut(s) 8, 406, 528, 706, 899, 975, 1036
TatI WGTACW 1 cut(s) 680
TauI GCSGC 1 cut(s) 34
TfiI GAWTC 6 cut(s) 22, 421, 560, 823, 860, 905
Tru1I TTAA 3 cut(s) 405, 546, 1050
Tru9I TTAA 3 cut(s) 405, 546, 1050
TscAI CASTG 5 cut(s) 162, 274, 437, 814, 960
TspDTI ATGAA 9 cut(s) 88, 219, 573, 600, 666, 683, 741, 944, 1032
TspGWI ACGGA 1 cut(s) 366
TspRI CASTG 5 cut(s) 162, 274, 437, 814, 960
Van91I CCANNNNNTGG 1 cut(s) 191
XapI RAATTY 2 cut(s) 8, 1036
XbaI TCTAGA 1 cut(s) 893
XcmI CCANNNNNNNNNTGG 1 cut(s) 188
XhoI CTCGAG 1 cut(s) 1070
XmiI GTMKAC 1 cut(s) 336
XspI CTAG 5 cut(s) 126, 660, 678, 738, 894
Zsp2I ATGCAT 4 cut(s) 166, 496, 585, 610
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.