RLG00000000997

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0003125
Physical Location & Seq
Reverse (-)
9028340 .. 9029938
1599 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000997

Sequence Viewer

Length: 1182 bp
ATGGTAAGTCAAGCAGCGAGCCAAACAAGATTTCGAGCATTGAAACATGAAAATGGGATTGATGGGAGCGCCACCATAGTTATTAGAGTAATAGCATGCTTTCAACCTCTTCAGGATTGCCAGGCTGAATATTTTCGTCATTTGCTGAAACCTGTCACTTGTACATACGACTTTCTGGTGGTTGATTTGATTGGATGGAACTGCATTTCTGCATATAGAAACCCTGGCACTAGTATGCTTTTCACAAATGGAACTCTGCCAGTATATGCATCGTCTGGGTTGCCCCATTCACAACTAGGCAGACCAAATGAACCTCACGGTTGGTTCTATTGCTGGCCCAGTATCCAACAGGCCTTCATGCCTGCTACACCCACTGTTCTCAAAGAGAAACTTTCTACTTGCTCATTCCAAAACCCTAAGGAGACATTGGTACCCTGTGTAGACCCTGACAGTAAACAGAGGAGATTGCTTGTCAGCAATCCGTCAGGGGATCAAAGTTTGGTCTTTAATTCTGGATCAGTGAATCCTTTGCAGTGCCCTATTTCTTGGGACCAACAAGGTGCTTACTATGTCAATGGGAATGATCGTGGAACTAATAGAGGTTTTCAAAACCTCTTGGGACCAATTTTCACTGATGAGTTGAAAGGAAATGATGAATCTGGTGCTCAAAGTGAGATGCATGAAGACACGGAAGAACTGAATGCGTTGCTCTACTCAGATGATGAGAGCGATTATACAGAGGACGATGAAGTTACTAGCACAGGTCATTCCCCCAGTACAATGACAGTTCATGACAAGCAGAATTGGTTTGAAGCAAGGGAAGAAGAAGTTGCTAGTTCTTGTGGAATAACTAAAAAGCGAAAGATATTTGATGGAGGTTATGATGATGTACCATCTGTATTGGACACTGCGAGTTCCAAGAAACCCAACAGATCAGCGGAGTTGGAGGATGGTGCAGAATCCAGTTGTGCCTTCAACAGAAGTTCTGGTTCTAGAGAATTGGACTCCTTGTCCAGCAACAAGAAGATGAAAAAGGACAAAATACGCGAGACAGTGAGCATTCTGCAGAACATAATTCCGGGTGTCAAGGGGAAAGATGCAATGGTGGTGATAGATGAAGCCATCCACTACTTAAAATCGCTGAAGCTGAAGGCCAGAGCTTTCGGACTCGAGGCTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

394

Amino Acids

43.49

Weight (kDa)

5.23

Isoelectric Point (pI)

45.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH_SAC51 PF23173 339 - 383 1.1e-14 Transcription factor SAC51 bHLH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 430
AccB1I GGYRCC 1 cut(s) 430
AccI GTMKAC 1 cut(s) 441
AccII CGCG 1 cut(s) 1047
AciI CCGC 1 cut(s) 938
AclWI GGATC 2 cut(s) 498, 523
AcuI CTGAAG 3 cut(s) 95, 1163, 1169
AfaI GTAC 4 cut(s) 163, 432, 778, 891
AgsI TTSAA 6 cut(s) 43, 104, 608, 643, 812, 976
AhdI GACNNNNNGTC 1 cut(s) 1009
AhlI ACTAGT 1 cut(s) 230
AjnI CCWGG 2 cut(s) 120, 223
AjuI GAANNNNNNNTTGG 2 cut(s) 15, 47
AluBI AGCT 2 cut(s) 1147, 1160
AluI AGCT 2 cut(s) 1147, 1160
Alw21I GWGCWC 1 cut(s) 667
Alw26I GTCTC 2 cut(s) 416, 1043
AlwI GGATC 2 cut(s) 498, 523
Ama87I CYCGRG 1 cut(s) 1169
AoxI GGCC 3 cut(s) 335, 351, 1152
ApeKI GCWGC 1 cut(s) 14
Asp700I GAANNNNTTC 1 cut(s) 132
Asp718I GGTACC 1 cut(s) 430
AspLEI GCGC 1 cut(s) 71
AspS9I GGNCC 3 cut(s) 336, 550, 620
AsuC2I CCSGG 1 cut(s) 1080
AsuHPI GGTGA 1 cut(s) 1120
AvaI CYCGRG 1 cut(s) 1169
AvaII GGWCC 2 cut(s) 550, 620
AxyI CCTNAGG 1 cut(s) 417
BaeGI GKGCMC 1 cut(s) 539
BaeI ACNNNNGTAYC 2 cut(s) 414, 447
BanI GGYRCC 1 cut(s) 430
BbsI GAAGAC 1 cut(s) 690
Bbv12I GWGCWC 1 cut(s) 667
BbvI GCAGC 1 cut(s) 26
BccI CCATC 6 cut(s) 56, 189, 866, 901, 944, 1130
BciT130I CCWGG 2 cut(s) 122, 225
BciVI GTATCC 1 cut(s) 353
BcnI CCSGG 1 cut(s) 1080
BcoDI GTCTC 2 cut(s) 416, 1043
BcuI ACTAGT 1 cut(s) 230
BfaI CTAG 5 cut(s) 231, 296, 756, 834, 993
BfmI CTRYAG 1 cut(s) 1064
BfoI RGCGCY 1 cut(s) 72
BfuI GTATCC 1 cut(s) 353
BisI GCNGC 1 cut(s) 15
BlsI GCNGC 1 cut(s) 16
Bme1390I CCNGG 3 cut(s) 122, 225, 1080
Bme18I GGWCC 2 cut(s) 550, 620
BmeRI GACNNNNNGTC 1 cut(s) 1009
BmeT110I CYCGRG 1 cut(s) 1169
BmgT120I GGNCC 3 cut(s) 336, 550, 620
BmiI GGNNCC 3 cut(s) 432, 551, 621
BmrFI CCNGG 3 cut(s) 122, 225, 1080
BmrI ACTGGG 2 cut(s) 333, 768
BmsI GCATC 3 cut(s) 278, 666, 1087
BmuI ACTGGG 2 cut(s) 333, 768
BpiI GAAGAC 1 cut(s) 690
BpuMI CCSGG 1 cut(s) 1080
BsaJI CCNNGG 1 cut(s) 223
Bse1I ACTGG 4 cut(s) 260, 339, 774, 963
Bse21I CCTNAGG 1 cut(s) 417
Bse3DI GCAATG 1 cut(s) 1107
BseBI CCWGG 2 cut(s) 122, 225
BseDI CCNNGG 1 cut(s) 223
BseGI GGATG 3 cut(s) 200, 955, 1122
BseMI GCAATG 1 cut(s) 1107
BseMII CTCAG 1 cut(s) 729
BseNI ACTGG 4 cut(s) 260, 339, 774, 963
BseRI GAGGAG 1 cut(s) 475
BseSI GKGCMC 1 cut(s) 539
BseXI GCAGC 1 cut(s) 26
BsgI GTGCAG 1 cut(s) 975
Bsh1236I CGCG 1 cut(s) 1047
BshFI GGCC 3 cut(s) 337, 353, 1154
BshNI GGYRCC 1 cut(s) 430
BsiHKAI GWGCWC 1 cut(s) 667
BsiHKCI CYCGRG 1 cut(s) 1169
BsiSI CCGG 1 cut(s) 1079
BslFI GGGAC 2 cut(s) 563, 633
BsmAI GTCTC 2 cut(s) 416, 1043
BsmFI GGGAC 2 cut(s) 563, 633
BsmI GAATGC 2 cut(s) 706, 1059
BsnI GGCC 3 cut(s) 337, 353, 1154
BsoBI CYCGRG 1 cut(s) 1169
Bsp1286I GDGCHC 2 cut(s) 539, 667
Bsp1407I TGTACA 1 cut(s) 161
Bsp143I GATC 4 cut(s) 490, 515, 583, 932
BspACI CCGC 1 cut(s) 938
BspANI GGCC 3 cut(s) 337, 353, 1154
BspCNI CTCAG 1 cut(s) 728
BspFNI CGCG 1 cut(s) 1047
BspHI TCATGA 1 cut(s) 790
BspLI GGNNCC 3 cut(s) 432, 551, 621
BspMAI CTGCAG 1 cut(s) 1068
BspPI GGATC 2 cut(s) 498, 523
BspT107I GGYRCC 1 cut(s) 430
BsrDI GCAATG 1 cut(s) 1107
BsrGI TGTACA 1 cut(s) 161
BsrI ACTGG 4 cut(s) 260, 339, 774, 963
BssECI CCNNGG 1 cut(s) 223
BssMI GATC 4 cut(s) 490, 515, 583, 932
Bst2UI CCWGG 2 cut(s) 122, 225
Bst4CI ACNGT 5 cut(s) 320, 376, 452, 787, 1054
Bst6I CTCTTC 1 cut(s) 114
BstAUI TGTACA 1 cut(s) 161
BstC8I GCNNGC 4 cut(s) 19, 97, 335, 363
BstDEI CTNAG 2 cut(s) 417, 715
BstF5I GGATG 3 cut(s) 200, 955, 1122
BstFNI CGCG 1 cut(s) 1047
BstH2I RGCGCY 1 cut(s) 72
BstHHI GCGC 1 cut(s) 71
BstKTI GATC 4 cut(s) 493, 518, 586, 935
BstMAI GTCTC 2 cut(s) 416, 1043
BstMBI GATC 4 cut(s) 490, 515, 583, 932
BstNI CCWGG 2 cut(s) 122, 225
BstNSI RCATGY 1 cut(s) 99
BstSCI CCNGG 3 cut(s) 120, 223, 1078
BstSFI CTRYAG 1 cut(s) 1064
BstSLI GKGCMC 1 cut(s) 539
BstUI CGCG 1 cut(s) 1047
BstV1I GCAGC 1 cut(s) 26
BstV2I GAAGAC 1 cut(s) 690
Bsu36I CCTNAGG 1 cut(s) 417
BsuI GTATCC 1 cut(s) 353
BsuRI GGCC 3 cut(s) 337, 353, 1154
BtsCI GGATG 3 cut(s) 200, 955, 1122
BtsI GCAGTG 2 cut(s) 539, 906
BtsIMutI CAGTG 6 cut(s) 372, 525, 539, 630, 906, 1059
Cac8I GCNNGC 4 cut(s) 19, 97, 335, 363
CciI TCATGA 1 cut(s) 790
CfoI GCGC 1 cut(s) 71
Cfr13I GGNCC 3 cut(s) 336, 550, 620
Csp6I GTAC 4 cut(s) 162, 431, 777, 890
CviAII CATG 5 cut(s) 47, 96, 358, 680, 791
CviJI RGCY 9 cut(s) 21, 125, 337, 353, 1121, 1147, 1154, 1160, 1175
CviKI_1 RGCY 9 cut(s) 21, 125, 337, 353, 1121, 1147, 1154, 1160, 1175
CviQI GTAC 4 cut(s) 162, 431, 777, 890
DdeI CTNAG 2 cut(s) 417, 715
DpnI GATC 4 cut(s) 492, 517, 585, 934
DpnII GATC 4 cut(s) 490, 515, 583, 932
DriI GACNNNNNGTC 1 cut(s) 1009
Eam1104I CTCTTC 1 cut(s) 114
Eam1105I GACNNNNNGTC 1 cut(s) 1009
EarI CTCTTC 1 cut(s) 114
Eco147I AGGCCT 1 cut(s) 353
Eco47I GGWCC 2 cut(s) 550, 620
Eco57I CTGAAG 3 cut(s) 95, 1163, 1169
Eco81I CCTNAGG 1 cut(s) 417
Eco88I CYCGRG 1 cut(s) 1169
EcoRII CCWGG 2 cut(s) 120, 223
EcoT22I ATGCAT 2 cut(s) 271, 681
FaeI CATG 5 cut(s) 50, 99, 361, 683, 794
FalI AAGNNNNNCTT 2 cut(s) 375, 407
FaqI GGGAC 2 cut(s) 563, 633
FatI CATG 5 cut(s) 46, 95, 357, 679, 790
FblI GTMKAC 1 cut(s) 441
Fnu4HI GCNGC 1 cut(s) 15
FokI GGATG 3 cut(s) 207, 962, 1109
Fsp4HI GCNGC 1 cut(s) 15
FspBI CTAG 5 cut(s) 231, 296, 756, 834, 993
GlaI GCGC 1 cut(s) 70
GluI GCNGC 1 cut(s) 15
HaeII RGCGCY 1 cut(s) 72
HaeIII GGCC 3 cut(s) 337, 353, 1154
HapII CCGG 1 cut(s) 1079
HhaI GCGC 1 cut(s) 71
Hin1II CATG 5 cut(s) 50, 99, 361, 683, 794
Hin6I GCGC 1 cut(s) 69
HinP1I GCGC 1 cut(s) 69
HinfI GANTC 5 cut(s) 523, 656, 959, 1004, 1167
HpaII CCGG 1 cut(s) 1079
HphI GGTGA 1 cut(s) 1120
Hpy166II GTNNAC 2 cut(s) 442, 455
Hpy188I TCNGA 3 cut(s) 718, 1166, 1181
Hpy188III TCNNGA 4 cut(s) 113, 513, 791, 993
Hpy8I GTNNAC 2 cut(s) 442, 455
HpyAV CCTTC 3 cut(s) 364, 982, 1144
HpyCH4III ACNGT 5 cut(s) 320, 376, 452, 787, 1054
HpyCH4V TGCA 8 cut(s) 204, 212, 269, 532, 679, 956, 1066, 1100
HpyF3I CTNAG 2 cut(s) 417, 715
Hsp92II CATG 5 cut(s) 50, 99, 361, 683, 794
HspAI GCGC 1 cut(s) 69
KpnI GGTACC 1 cut(s) 434
Kzo9I GATC 4 cut(s) 490, 515, 583, 932
LmnI GCTCC 1 cut(s) 66
Lsp1109I GCAGC 1 cut(s) 26
LweI GCATC 3 cut(s) 278, 666, 1087
MaeI CTAG 5 cut(s) 231, 296, 756, 834, 993
MaeIII GTNAC 2 cut(s) 154, 751
MalI GATC 4 cut(s) 492, 517, 585, 934
MboI GATC 4 cut(s) 490, 515, 583, 932
MboII GAAGA 6 cut(s) 101, 695, 704, 833, 836, 1036
MhlI GDGCHC 2 cut(s) 539, 667
MluCI AATT 5 cut(s) 508, 624, 802, 998, 1074
MlyI GAGTC 2 cut(s) 998, 1161
MmeI TCCRAC 2 cut(s) 370, 924
MnlI CCTC 9 cut(s) 117, 324, 453, 593, 623, 733, 869, 940, 1165
Mph1103I ATGCAT 2 cut(s) 271, 681
MroXI GAANNNNTTC 1 cut(s) 132
MseI TTAA 2 cut(s) 507, 1133
MslI CAYNNNNRTG 2 cut(s) 51, 233
MspA1I CMGCKG 1 cut(s) 938
MspI CCGG 1 cut(s) 1079
MspR9I CCNGG 3 cut(s) 122, 225, 1080
Mva1269I GAATGC 2 cut(s) 706, 1059
MvaI CCWGG 2 cut(s) 122, 225
MvnI CGCG 1 cut(s) 1047
NciI CCSGG 1 cut(s) 1080
NdeII GATC 4 cut(s) 490, 515, 583, 932
NlaIII CATG 5 cut(s) 50, 99, 361, 683, 794
NlaIV GGNNCC 3 cut(s) 432, 551, 621
NmuCI GTSAC 1 cut(s) 154
NsiI ATGCAT 2 cut(s) 271, 681
NspI RCATGY 1 cut(s) 99
PaeI GCATGC 1 cut(s) 99
PaeR7I CTCGAG 1 cut(s) 1169
PagI TCATGA 1 cut(s) 790
PceI AGGCCT 1 cut(s) 353
PctI GAATGC 2 cut(s) 706, 1059
PdmI GAANNNNTTC 1 cut(s) 132
PfeI GAWTC 3 cut(s) 523, 656, 959
PkrI GCNGC 1 cut(s) 16
PleI GAGTC 2 cut(s) 998, 1161
PpsI GAGTC 2 cut(s) 998, 1161
Psp6I CCWGG 2 cut(s) 120, 223
PspGI CCWGG 2 cut(s) 120, 223
PspN4I GGNNCC 3 cut(s) 432, 551, 621
PspPI GGNCC 3 cut(s) 336, 550, 620
PspXI VCTCGAGB 1 cut(s) 1169
PstI CTGCAG 1 cut(s) 1068
RsaI GTAC 4 cut(s) 163, 432, 778, 891
RsaNI GTAC 4 cut(s) 162, 431, 777, 890
RseI CAYNNNNRTG 2 cut(s) 51, 233
SaqAI TTAA 2 cut(s) 507, 1133
SatI GCNGC 1 cut(s) 15
Sau3AI GATC 4 cut(s) 490, 515, 583, 932
Sau96I GGNCC 3 cut(s) 336, 550, 620
SchI GAGTC 2 cut(s) 998, 1161
ScrFI CCNGG 3 cut(s) 122, 225, 1080
SduI GDGCHC 2 cut(s) 539, 667
SfaNI GCATC 3 cut(s) 278, 666, 1087
SfcI CTRYAG 1 cut(s) 1064
Sfr274I CTCGAG 1 cut(s) 1169
SinI GGWCC 2 cut(s) 550, 620
SlaI CTCGAG 1 cut(s) 1169
SmiMI CAYNNNNRTG 2 cut(s) 51, 233
SmlI CTYRAG 1 cut(s) 1169
SmoI CTYRAG 1 cut(s) 1169
SpeI ACTAGT 1 cut(s) 230
SphI GCATGC 1 cut(s) 99
Sse9I AATT 5 cut(s) 508, 624, 802, 998, 1074
SseBI AGGCCT 1 cut(s) 353
SsiI CCGC 1 cut(s) 938
SspI AATATT 1 cut(s) 131
SspMI CTAG 5 cut(s) 231, 296, 756, 834, 993
StuI AGGCCT 1 cut(s) 353
StyD4I CCNGG 3 cut(s) 120, 223, 1078
TaaI ACNGT 5 cut(s) 320, 376, 452, 787, 1054
TaqI TCGA 2 cut(s) 34, 1170
TasI AATT 5 cut(s) 508, 624, 802, 998, 1074
TatI WGTACW 2 cut(s) 161, 776
TfiI GAWTC 3 cut(s) 523, 656, 959
Tru1I TTAA 2 cut(s) 507, 1133
Tru9I TTAA 2 cut(s) 507, 1133
TscAI CASTG 6 cut(s) 379, 525, 539, 637, 913, 1059
TseFI GTSAC 1 cut(s) 154
TseI GCWGC 1 cut(s) 14
Tsp45I GTSAC 1 cut(s) 154
TspDTI ATGAA 9 cut(s) 63, 324, 346, 669, 696, 762, 779, 1043, 1131
TspGWI ACGGA 2 cut(s) 471, 704
TspRI CASTG 6 cut(s) 379, 525, 539, 637, 913, 1059
VpaK11BI GGWCC 2 cut(s) 550, 620
XbaI TCTAGA 1 cut(s) 992
XceI RCATGY 1 cut(s) 99
XhoI CTCGAG 1 cut(s) 1169
XmiI GTMKAC 1 cut(s) 441
XmnI GAANNNNTTC 1 cut(s) 132
XspI CTAG 5 cut(s) 231, 296, 756, 834, 993
Zsp2I ATGCAT 2 cut(s) 271, 681
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.