Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003125

Physical Location & Seq

Genomic Coordinates Reverse (-)

43188003 .. 43189321

Gene Structure 1319 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G527600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGGTGAAGATTTTGGAACGTGGATTCCTCAGCTGCATCTTGGCTGGCAACCTCCCGATCCAAATTCCTTCGGTGCTCCACTTGGCTTGGGGCAACAAAACTTCATTTCTGCATATGGTAATCCTGGCACTAATATGCCTGTGCCAAATGGTACTTCGCCAGCATATGCATCTCCTGAGTTGCCCCATCCACAACTTGGCAGACCAAATGAACCTCACGGTTGGTTCTATTGCTTACCCCGTATCAGACAGGCCTTCGTGCCTGCTGCACACTCTGTTCTCAGAGAGAAACTTTCTGCTTGCCGTTATGAAAGTCCGGGGGACACATTGGTACCCAATGCAGACTCTGTCTGTGAACAGAAGAGACTCCTTGTTAACAATTCGTCAGGGGATCAAACAACTTTTGTCTTTGGTTCTGGGATTGTGAATCCTTTGCTGTGCCGTACTTCTTGGAATCCAAACCAGCAAGGGGCTTATTATTTGAACGGGGATGGTCCTCAAACTGGAAGAGATTTGAAAAATCTATCAGGAGCAAATTTGACTGATGAGCTGAAAGGAAACGATGCAAGTGGTGCTCAAAGTGAGATGCATGAGGACACAGAAGAACTGAATGCCTTGCTCTACTCAGATGGTGATAGTGATTATACCGAAGAGGACGATGAAGTTACTAGCACAGGTCATTCCCCTAGTACAATGACAGTTCATGATAAGAAAAATTGGTTTGAAGAAAGGACCGAAGAAGTTGCTAGTTCTGCTGGAGTGACTAAAAAGCGGAAGCTATTTGATGGAGGTTATGGTGAGGTACCATCCATAATGGACACTGCGAGTTCCATGAAACCCAACCGATCGTTGGAGTTAGAGGATGATGCAGAATCCAGTTGTGCCTGCAACCGAAGTTCTGGGTTCAGAGAAGTGGATTCCTTATCCAGCAACAAGAAAATGAGAAAGGAAAAAATACGCGAAACTGTGAACATTCTGCAGAACATAATTCCTGGCGGCAAGGGGAAGGATGCAATGGTGGTGCTTGACGAAGCAATCCACTATTTAAAGTCATTGAAGCTCAAAGCCAAAGCCTTCGGACTTGATTCTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

365

Amino Acids

39.75

Weight (kDa)

5.02

Isoelectric Point (pI)

50.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50010
fragaria_vesca	FvH4_5g35810
malus_domestica	MD04G1047500.v1.1 MD05G1288900.v1.1 MD08G1192900.v1.1 MD08G1193000.v1.1 MD10G1265000.v1.1 MD15G1381700.v1.1 MD15G1381800.v1.1
prunus_persica	Prupe.1G527600_v2.0.a1 Prupe.1G527700_v2.0.a1 Prupe.4G077000_v2.0.a1 Prupe.8G067700_v2.0.a1
pyrus_communis	pycom08g16640 pycom15g34180
rosa_chinensis	RchiOBHm_Chr5g0013401 RchiOBHm_Chr7g0237501 RchiOBHm_Chr7g0237511
rosa_laevigata	RLG00000000997
rosa_multiflora	Rmu_co8283291.1_g000001 Rmu_sc0013113.1_g000010
rosa_roxburghii	Rroxscaffold_3G00224070 Rroxscaffold_3G00224080
rosa_rugosa	Rorug02G0445800 Rorug02G0445800 Rorug02G0445800 Rorug04G0381500 Rorug06G0077400 Rorug07G0074000 Rorug07G0303700
rosa_samantha	Rh6BG229200 Rh7AG461300 Rh7BG431500 Rh7CG478600 Rh7DG447800
rosa_wichuraiana	Rw7G038170 Rw7G038180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	331, 802
AccB1I	GGYRCC	2 cut(s)	331, 802
AccB7I	CCANNNNNTGG	1 cut(s)	197
AccII	CGCG	1 cut(s)	960
AciI	CCGC	2 cut(s)	772, 996
AclWI	GGATC	2 cut(s)	53, 399
AcsI	RAATTY	2 cut(s)	64, 535
AfaI	GTAC	5 cut(s)	154, 333, 445, 691, 804
AfiI	CCNNNNNNNGG	4 cut(s)	197, 469, 503, 850
AgsI	TTSAA	4 cut(s)	484, 517, 725, 1057
AjnI	CCWGG	2 cut(s)	124, 991
AjuI	GAANNNNNNNTTGG	2 cut(s)	139, 171
AloI	GAACNNNNNNTCC	2 cut(s)	10, 42
AluBI	AGCT	4 cut(s)	34, 550, 778, 1060
AluI	AGCT	4 cut(s)	34, 550, 778, 1060
Alw21I	GWGCWC	2 cut(s)	79, 577
Alw26I	GTCTC	1 cut(s)	358
AlwI	GGATC	2 cut(s)	53, 399
AlwNI	CAGNNNCTG	1 cut(s)	347
AoxI	GGCC	1 cut(s)	252
ApeKI	GCWGC	2 cut(s)	34, 266
ApoI	RAATTY	2 cut(s)	64, 535
Asp718I	GGTACC	2 cut(s)	331, 802
AspS9I	GGNCC	2 cut(s)	494, 732
AsuC2I	CCSGG	1 cut(s)	318
AsuHPI	GGTGA	3 cut(s)	17, 644, 809
AvaII	GGWCC	2 cut(s)	494, 732
BaeI	ACNNNNGTAYC	2 cut(s)	315, 348
BanI	GGYRCC	2 cut(s)	331, 802
Bbv12I	GWGCWC	2 cut(s)	79, 577
BbvCI	CCTCAGC	1 cut(s)	30
BbvI	GCAGC	2 cut(s)	21, 253
BccI	CCATC	5 cut(s)	195, 485, 623, 779, 814
BceAI	ACGGC	2 cut(s)	288, 426
BcgI	CGANNNNNNTGC	2 cut(s)	725, 759
BciT130I	CCWGG	2 cut(s)	126, 993
BcnI	CCSGG	1 cut(s)	318
BcoDI	GTCTC	1 cut(s)	358
BfaI	CTAG	3 cut(s)	669, 687, 747
BfmI	CTRYAG	1 cut(s)	977
BisI	GCNGC	3 cut(s)	35, 267, 997
BlsI	GCNGC	3 cut(s)	36, 268, 998
Bme1390I	CCNGG	3 cut(s)	126, 318, 993
Bme18I	GGWCC	2 cut(s)	494, 732
BmgT120I	GGNCC	2 cut(s)	494, 732
BmiI	GGNNCC	2 cut(s)	333, 804
BmrFI	CCNGG	3 cut(s)	126, 318, 993
BmsI	GCATC	6 cut(s)	46, 179, 553, 576, 856, 1000
BpmI	CTGGAG	1 cut(s)	777
Bpu10I	CCTNAGC	1 cut(s)	30
BpuMI	CCSGG	1 cut(s)	318
BsaJI	CCNNGG	1 cut(s)	317
Bsc4I	CCNNNNNNNGG	4 cut(s)	197, 469, 503, 850
Bse1I	ACTGG	2 cut(s)	508, 876
Bse3DI	GCAATG	1 cut(s)	1020
BseBI	CCWGG	2 cut(s)	126, 993
BseDI	CCNNGG	1 cut(s)	317
BseGI	GGATG	5 cut(s)	187, 496, 806, 868, 1015
BseLI	CCNNNNNNNGG	4 cut(s)	197, 469, 503, 850
BseMI	GCAATG	1 cut(s)	1020
BseMII	CTCAG	4 cut(s)	44, 168, 295, 639
BseNI	ACTGG	2 cut(s)	508, 876
BseXI	GCAGC	2 cut(s)	21, 253
BsgI	GTGCAG	1 cut(s)	252
Bsh1236I	CGCG	1 cut(s)	960
Bsh1285I	CGRYCG	1 cut(s)	848
BshFI	GGCC	1 cut(s)	254
BshNI	GGYRCC	2 cut(s)	331, 802
BsiEI	CGRYCG	1 cut(s)	848
BsiHKAI	GWGCWC	2 cut(s)	79, 577
BsiSI	CCGG	1 cut(s)	317
BslFI	GGGAC	1 cut(s)	335
BslI	CCNNNNNNNGG	4 cut(s)	197, 469, 503, 850
BsmAI	GTCTC	1 cut(s)	358
BsmFI	GGGAC	1 cut(s)	335
BsmI	GAATGC	1 cut(s)	616
BsnI	GGCC	1 cut(s)	254
Bsp1286I	GDGCHC	2 cut(s)	79, 577
Bsp143I	GATC	3 cut(s)	58, 391, 845
BspACI	CCGC	2 cut(s)	772, 996
BspANI	GGCC	1 cut(s)	254
BspCNI	CTCAG	4 cut(s)	43, 169, 294, 638
BspFNI	CGCG	1 cut(s)	960
BspHI	TCATGA	1 cut(s)	703
BspLI	GGNNCC	2 cut(s)	333, 804
BspMAI	CTGCAG	1 cut(s)	981
BspPI	GGATC	2 cut(s)	53, 399
BspT107I	GGYRCC	2 cut(s)	331, 802
BsrDI	GCAATG	1 cut(s)	1020
BsrI	ACTGG	2 cut(s)	508, 876
BssECI	CCNNGG	1 cut(s)	317
BssMI	GATC	3 cut(s)	58, 391, 845
Bst2UI	CCWGG	2 cut(s)	126, 993
Bst4CI	ACNGT	3 cut(s)	221, 700, 967
Bst6I	CTCTTC	3 cut(s)	356, 502, 645
BstAPI	GCANNNNNTGC	1 cut(s)	572
BstC8I	GCNNGC	5 cut(s)	47, 162, 264, 301, 886
BstDEI	CTNAG	4 cut(s)	30, 177, 281, 625
BstF5I	GGATG	5 cut(s)	187, 496, 806, 868, 1015
BstFNI	CGCG	1 cut(s)	960
BstKTI	GATC	3 cut(s)	61, 394, 848
BstMAI	GTCTC	1 cut(s)	358
BstMBI	GATC	3 cut(s)	58, 391, 845
BstMCI	CGRYCG	1 cut(s)	848
BstMWI	GCNNNNNNNGC	2 cut(s)	572, 752
BstNI	CCWGG	2 cut(s)	126, 993
BstSCI	CCNGG	3 cut(s)	124, 316, 991
BstSFI	CTRYAG	1 cut(s)	977
BstUI	CGCG	1 cut(s)	960
BstV1I	GCAGC	2 cut(s)	21, 253
BsuRI	GGCC	1 cut(s)	254
BtsCI	GGATG	5 cut(s)	187, 496, 806, 868, 1015
BtsI	GCAGTG	1 cut(s)	819
BtsIMutI	CAGTG	1 cut(s)	819
Cac8I	GCNNGC	5 cut(s)	47, 162, 264, 301, 886
CaiI	CAGNNNCTG	1 cut(s)	347
CciI	TCATGA	1 cut(s)	703
Cfr13I	GGNCC	2 cut(s)	494, 732
Csp6I	GTAC	5 cut(s)	153, 332, 444, 690, 803
CspCI	CAANNNNNGTGG	2 cut(s)	69, 104
CviAII	CATG	3 cut(s)	590, 704, 832
CviQI	GTAC	5 cut(s)	153, 332, 444, 690, 803
DdeI	CTNAG	4 cut(s)	30, 177, 281, 625
DpnI	GATC	3 cut(s)	60, 393, 847
DpnII	GATC	3 cut(s)	58, 391, 845
DraI	TTTAAA	1 cut(s)	1047
Eam1104I	CTCTTC	3 cut(s)	356, 502, 645
EarI	CTCTTC	3 cut(s)	356, 502, 645
Eco147I	AGGCCT	1 cut(s)	254
Eco47I	GGWCC	2 cut(s)	494, 732
EcoRII	CCWGG	2 cut(s)	124, 991
EcoT22I	ATGCAT	2 cut(s)	172, 591
FaeI	CATG	3 cut(s)	593, 707, 835
FaqI	GGGAC	1 cut(s)	335
FatI	CATG	3 cut(s)	589, 703, 831
FauNDI	CATATG	2 cut(s)	115, 166
Fnu4HI	GCNGC	3 cut(s)	35, 267, 997
FokI	GGATG	5 cut(s)	174, 503, 793, 875, 1022
Fsp4HI	GCNGC	3 cut(s)	35, 267, 997
FspBI	CTAG	3 cut(s)	669, 687, 747
GluI	GCNGC	3 cut(s)	35, 267, 997
GsuI	CTGGAG	1 cut(s)	777
HaeIII	GGCC	1 cut(s)	254
HapII	CCGG	1 cut(s)	317
Hin1II	CATG	3 cut(s)	593, 707, 835
HincII	GTYRAC	1 cut(s)	376
HindII	GTYRAC	1 cut(s)	376
HinfI	GANTC	8 cut(s)	25, 344, 366, 427, 454, 872, 917, 1085
HpaI	GTTAAC	1 cut(s)	376
HpaII	CCGG	1 cut(s)	317
HphI	GGTGA	3 cut(s)	17, 644, 809
Hpy166II	GTNNAC	3 cut(s)	356, 376, 970
Hpy188I	TCNGA	6 cut(s)	248, 284, 628, 908, 1079, 1094
Hpy188III	TCNNGA	4 cut(s)	56, 176, 528, 704
Hpy8I	GTNNAC	3 cut(s)	356, 376, 970
HpyAV	CCTTC	4 cut(s)	79, 265, 1000, 1084
HpyCH4III	ACNGT	3 cut(s)	221, 700, 967
HpyCH4IV	ACGT	1 cut(s)	20
HpyF10VI	GCNNNNNNNGC	2 cut(s)	572, 752
HpyF3I	CTNAG	4 cut(s)	30, 177, 281, 625
HpySE526I	ACGT	1 cut(s)	20
Hsp92II	CATG	3 cut(s)	593, 707, 835
KpnI	GGTACC	2 cut(s)	335, 806
KspAI	GTTAAC	1 cut(s)	376
Kzo9I	GATC	3 cut(s)	58, 391, 845
LmnI	GCTCC	2 cut(s)	82, 530
Lsp1109I	GCAGC	2 cut(s)	21, 253
LweI	GCATC	6 cut(s)	46, 179, 553, 576, 856, 1000
MaeI	CTAG	3 cut(s)	669, 687, 747
MaeII	ACGT	1 cut(s)	20
MaeIII	GTNAC	2 cut(s)	664, 760
MalI	GATC	3 cut(s)	60, 393, 847
MboI	GATC	3 cut(s)	58, 391, 845
MboII	GAAGA	7 cut(s)	20, 373, 519, 614, 662, 737, 749
MhlI	GDGCHC	2 cut(s)	79, 577
MluCI	AATT	5 cut(s)	64, 379, 535, 715, 987
MlyI	GAGTC	2 cut(s)	338, 360
MmeI	TCCRAC	1 cut(s)	831
MnlI	CCTC	9 cut(s)	39, 63, 225, 507, 586, 646, 782, 793, 853
Mph1103I	ATGCAT	2 cut(s)	172, 591
MseI	TTAA	2 cut(s)	375, 1046
MslI	CAYNNNNRTG	1 cut(s)	134
MspA1I	CMGCKG	1 cut(s)	34
MspI	CCGG	1 cut(s)	317
MspR9I	CCNGG	3 cut(s)	126, 318, 993
Mva1269I	GAATGC	1 cut(s)	616
MvaI	CCWGG	2 cut(s)	126, 993
MvnI	CGCG	1 cut(s)	960
MwoI	GCNNNNNNNGC	2 cut(s)	572, 752
NciI	CCSGG	1 cut(s)	318
NdeI	CATATG	2 cut(s)	115, 166
NdeII	GATC	3 cut(s)	58, 391, 845
NlaIII	CATG	3 cut(s)	593, 707, 835
NlaIV	GGNNCC	2 cut(s)	333, 804
NmuCI	GTSAC	1 cut(s)	760
NsiI	ATGCAT	2 cut(s)	172, 591
PagI	TCATGA	1 cut(s)	703
PceI	AGGCCT	1 cut(s)	254
PctI	GAATGC	1 cut(s)	616
PfeI	GAWTC	6 cut(s)	25, 427, 454, 872, 917, 1085
PflFI	GACNNNGTC	1 cut(s)	347
PflMI	CCANNNNNTGG	1 cut(s)	197
PkrI	GCNGC	3 cut(s)	36, 268, 998
Ple19I	CGATCG	1 cut(s)	848
PleI	GAGTC	2 cut(s)	338, 360
PpsI	GAGTC	2 cut(s)	338, 360
Psp6I	CCWGG	2 cut(s)	124, 991
PspGI	CCWGG	2 cut(s)	124, 991
PspN4I	GGNNCC	2 cut(s)	333, 804
PspPI	GGNCC	2 cut(s)	494, 732
PstI	CTGCAG	1 cut(s)	981
PstNI	CAGNNNCTG	1 cut(s)	347
PsyI	GACNNNGTC	1 cut(s)	347
PvuI	CGATCG	1 cut(s)	848
PvuII	CAGCTG	1 cut(s)	34
RsaI	GTAC	5 cut(s)	154, 333, 445, 691, 804
RsaNI	GTAC	5 cut(s)	153, 332, 444, 690, 803
RseI	CAYNNNNRTG	1 cut(s)	134
SaqAI	TTAA	2 cut(s)	375, 1046
SatI	GCNGC	3 cut(s)	35, 267, 997
Sau3AI	GATC	3 cut(s)	58, 391, 845
Sau96I	GGNCC	2 cut(s)	494, 732
SchI	GAGTC	2 cut(s)	338, 360
ScrFI	CCNGG	3 cut(s)	126, 318, 993
SduI	GDGCHC	2 cut(s)	79, 577
SfaNI	GCATC	6 cut(s)	46, 179, 553, 576, 856, 1000
SfcI	CTRYAG	1 cut(s)	977
SinI	GGWCC	2 cut(s)	494, 732
SmiMI	CAYNNNNRTG	1 cut(s)	134
Sse9I	AATT	5 cut(s)	64, 379, 535, 715, 987
SseBI	AGGCCT	1 cut(s)	254
SsiI	CCGC	2 cut(s)	772, 996
SspMI	CTAG	3 cut(s)	669, 687, 747
StuI	AGGCCT	1 cut(s)	254
StyD4I	CCNGG	3 cut(s)	124, 316, 991
TaaI	ACNGT	3 cut(s)	221, 700, 967
TaiI	ACGT	1 cut(s)	23
TaqII	GACCGA	1 cut(s)	749
TasI	AATT	5 cut(s)	64, 379, 535, 715, 987
TatI	WGTACW	1 cut(s)	689
TauI	GCSGC	1 cut(s)	999
TfiI	GAWTC	6 cut(s)	25, 427, 454, 872, 917, 1085
Tru1I	TTAA	2 cut(s)	375, 1046
Tru9I	TTAA	2 cut(s)	375, 1046
TscAI	CASTG	1 cut(s)	826
TseFI	GTSAC	1 cut(s)	760
TseI	GCWGC	2 cut(s)	34, 266
Tsp45I	GTSAC	1 cut(s)	760
TspDTI	ATGAA	6 cut(s)	94, 225, 324, 675, 692, 848
TspRI	CASTG	1 cut(s)	826
Tth111I	GACNNNGTC	1 cut(s)	347
Van91I	CCANNNNNTGG	1 cut(s)	197
VpaK11BI	GGWCC	2 cut(s)	494, 732
XapI	RAATTY	2 cut(s)	64, 535
XcmI	CCANNNNNNNNNTGG	2 cut(s)	194, 847
XspI	CTAG	3 cut(s)	669, 687, 747
Zsp2I	ATGCAT	2 cut(s)	172, 591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.