Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0003125

Physical Location & Seq

Genomic Coordinates Forward (+)

5539088 .. 5540717

Gene Structure 1630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1047500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 162 bp

ATGGTGTGTCAAGGTGCAAGCCAGACGAAATTTCGGGCTTTGAAACATGAAAATGGGATGGCTGGAAGACCAACAATTATAGTTAGAGTTATTGCTTGCTTTCAACCTTTGCAGGATTGCCAGGCTGAGTACTTTCGACAGCTGCTTAAGCCTATTACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009653 GO:0009826 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0032989 GO:0040007 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0060560 GO:0065007 GO:0071840 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

54

Amino Acids

6.01

Weight (kDa)

9.42

Isoelectric Point (pI)

31.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0003125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50010
fragaria_vesca	FvH4_5g35810
malus_domestica	MD04G1047500.v1.1 MD05G1288900.v1.1 MD08G1192900.v1.1 MD08G1193000.v1.1 MD10G1265000.v1.1 MD15G1381700.v1.1 MD15G1381800.v1.1
prunus_persica	Prupe.1G527600_v2.0.a1 Prupe.1G527700_v2.0.a1 Prupe.4G077000_v2.0.a1 Prupe.8G067700_v2.0.a1
pyrus_communis	pycom08g16640 pycom15g34180
rosa_chinensis	RchiOBHm_Chr5g0013401 RchiOBHm_Chr7g0237501 RchiOBHm_Chr7g0237511
rosa_laevigata	RLG00000000997
rosa_multiflora	Rmu_co8283291.1_g000001 Rmu_sc0013113.1_g000010
rosa_roxburghii	Rroxscaffold_3G00224070 Rroxscaffold_3G00224080
rosa_rugosa	Rorug02G0445800 Rorug02G0445800 Rorug02G0445800 Rorug04G0381500 Rorug06G0077400 Rorug07G0074000 Rorug07G0303700
rosa_samantha	Rh6BG229200 Rh7AG461300 Rh7BG431500 Rh7CG478600 Rh7DG447800
rosa_wichuraiana	Rw7G038170 Rw7G038180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	29
AfaI	GTAC	1 cut(s)	131
AflII	CTTAAG	1 cut(s)	146
AgsI	TTSAA	2 cut(s)	43, 104
AjnI	CCWGG	1 cut(s)	120
AluBI	AGCT	1 cut(s)	142
AluI	AGCT	1 cut(s)	142
ApeKI	GCWGC	1 cut(s)	142
ApoI	RAATTY	1 cut(s)	29
BbsI	GAAGAC	1 cut(s)	73
BbvI	GCAGC	1 cut(s)	129
BccI	CCATC	1 cut(s)	52
BciT130I	CCWGG	1 cut(s)	122
BfrI	CTTAAG	1 cut(s)	146
BisI	GCNGC	1 cut(s)	143
BlsI	GCNGC	1 cut(s)	144
BmcAI	AGTACT	1 cut(s)	131
Bme1390I	CCNGG	1 cut(s)	122
BmrFI	CCNGG	1 cut(s)	122
BpiI	GAAGAC	1 cut(s)	73
BsaAI	YACGTR	1 cut(s)	159
BseBI	CCWGG	1 cut(s)	122
BseGI	GGATG	1 cut(s)	63
BseMII	CTCAG	1 cut(s)	117
BseXI	GCAGC	1 cut(s)	129
BspCNI	CTCAG	1 cut(s)	118
BspTI	CTTAAG	1 cut(s)	146
Bst2UI	CCWGG	1 cut(s)	122
BstAFI	CTTAAG	1 cut(s)	146
BstBAI	YACGTR	1 cut(s)	159
BstC8I	GCNNGC	2 cut(s)	19, 97
BstDEI	CTNAG	1 cut(s)	126
BstF5I	GGATG	1 cut(s)	63
BstMWI	GCNNNNNNNGC	1 cut(s)	148
BstNI	CCWGG	1 cut(s)	122
BstSCI	CCNGG	1 cut(s)	120
BstSNI	TACGTA	1 cut(s)	159
BstV1I	GCAGC	1 cut(s)	129
BstV2I	GAAGAC	1 cut(s)	73
BtsCI	GGATG	1 cut(s)	63
Cac8I	GCNNGC	2 cut(s)	19, 97
Csp6I	GTAC	1 cut(s)	130
CviAII	CATG	1 cut(s)	47
CviJI	RGCY	6 cut(s)	21, 38, 62, 125, 142, 151
CviKI_1	RGCY	6 cut(s)	21, 38, 62, 125, 142, 151
CviQI	GTAC	1 cut(s)	130
DdeI	CTNAG	1 cut(s)	126
Eco105I	TACGTA	1 cut(s)	159
EcoRII	CCWGG	1 cut(s)	120
FaeI	CATG	1 cut(s)	50
FaiI	YATR	2 cut(s)	48, 80
FatI	CATG	1 cut(s)	46
Fnu4HI	GCNGC	1 cut(s)	143
FokI	GGATG	1 cut(s)	70
Fsp4HI	GCNGC	1 cut(s)	143
GluI	GCNGC	1 cut(s)	143
Hin1II	CATG	1 cut(s)	50
HpyCH4IV	ACGT	1 cut(s)	158
HpyCH4V	TGCA	2 cut(s)	17, 112
HpyF10VI	GCNNNNNNNGC	1 cut(s)	148
HpyF3I	CTNAG	1 cut(s)	126
HpySE526I	ACGT	1 cut(s)	158
Hsp92II	CATG	1 cut(s)	50
LpnPI	CCDG	5 cut(s)	35, 48, 98, 107, 134
Lsp1109I	GCAGC	1 cut(s)	129
MaeII	ACGT	1 cut(s)	158
MboII	GAAGA	1 cut(s)	78
MluCI	AATT	2 cut(s)	29, 75
MseI	TTAA	1 cut(s)	147
MslI	CAYNNNNRTG	1 cut(s)	51
MspA1I	CMGCKG	1 cut(s)	142
MspCI	CTTAAG	1 cut(s)	146
MspR9I	CCNGG	1 cut(s)	122
MvaI	CCWGG	1 cut(s)	122
MwoI	GCNNNNNNNGC	1 cut(s)	148
NlaIII	CATG	1 cut(s)	50
PkrI	GCNGC	1 cut(s)	144
Ppu21I	YACGTR	1 cut(s)	159
Psp6I	CCWGG	1 cut(s)	120
PspGI	CCWGG	1 cut(s)	120
PvuII	CAGCTG	1 cut(s)	142
RsaI	GTAC	1 cut(s)	131
RsaNI	GTAC	1 cut(s)	130
RseI	CAYNNNNRTG	1 cut(s)	51
SaqAI	TTAA	1 cut(s)	147
SatI	GCNGC	1 cut(s)	143
ScaI	AGTACT	1 cut(s)	131
ScrFI	CCNGG	1 cut(s)	122
SetI	ASST	4 cut(s)	16, 109, 144, 161
SmiMI	CAYNNNNRTG	1 cut(s)	51
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
SnaBI	TACGTA	1 cut(s)	159
Sse9I	AATT	2 cut(s)	29, 75
StyD4I	CCNGG	1 cut(s)	120
TaiI	ACGT	1 cut(s)	161
TaqI	TCGA	1 cut(s)	136
TasI	AATT	2 cut(s)	29, 75
TatI	WGTACW	1 cut(s)	129
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TseI	GCWGC	1 cut(s)	142
TspDTI	ATGAA	1 cut(s)	63
Vha464I	CTTAAG	1 cut(s)	146
XapI	RAATTY	1 cut(s)	29
ZrmI	AGTACT	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.