pycom15g34180

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0003125
Physical Location & Seq
Reverse (-)
33809796 .. 33811440
1645 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g34180.2

Sequence Viewer

Length: 1332 bp
ATGGGTGAAGATTTTGGAGCCTGGATTCCTCAGCAGCATCTGGGCTGGCAACCACCCGATCCGAATGCGATGGGTGCTCAACATGGCTTGGGGCAACAAAATTTCATTACTGCTTATGGGAAACCAGGCACTAATATGCTTTTGACAAATGGTACTATGCCGCCATATGCATCCTCCGAGTTGCCGCAACCACAAGTCGGCAGACCAAATGAACCTAAAGGTTGGTTCTATTGCTTACCCCGTATCAGACAGGCCTTCATGCCTGCCACAGACAATGGTCTCAAAGAGAAAGTTTCTTCTGCCTGTCATGAAAGTACTGGGGGGACATTCATACCGTACACAGACAGTGCCTTTGAACAGAAGAGACTCCTTGTTAACAATCCGTCAGGGTATCAGACAACTTTGGTCTTTAGTTCTGAGATAGTGAATCCATTGCAGTGCCATACTTCTTGGAATCCATACCAACAAGGTGCTTATTATTTGGATGGGGATGATCCTCGAAATGAAAGAGATTTTAAAAATCTATCTGGAGCAGTTTTGACAGATGAATTCAAAGGGAATGATGAATGTGGTGCTGAAAGTGAGATGCATGAAGACACAGAAGAACTGAATGCCTTGCTCTATTCAGATGGTGATAGCGATTATACTGAGGACGATGAAGTTACTAGCACCGGCCATTCTCCGAGTACAATGACAGTTCATGATAAGCAAAATTGGTTTGAAGAAGTTGCCAGTTCTGATGGAATGAATAAAAAGCGGAAGCTATTTGATGGAGGTAATGATGATGTGCCATCCGTAATGGACACTGCTAGTCCCATGAAACACAACCGATCGCTGGAGTTGGAGGATGATGCAGAATCCAGTTGTGCCTGCAACCGAAGTTCTGGATTAAGAGAAGTGGATTCCTTGTCCAGCAACAAGAAGATGAGAAAGGAGAAAATCCGCGAAACCATAAACATTCTGCAGAACATAATTCCCGATGGAAAGGGAAAGGATGCGATTGTGGTGCTCGATGAAGCAATCCACTACTTGAAATCGTTGAAGCTCAAAGCCAAGAGAGCGTGTCATATATTGGCATGGGGTGAATTCAAAGAGAAGGAGGAGAGAGGTCCCACCAAAAGAGATGAAGAGTGCACGCCCCTTGTGTTTTTTTGGGTCCCAACACTTCACTTTCCTCTCACTTTTGTGTTTACTTGTCATCTCTCTCTCTCTGCAAGTTTGCACGAGCAAGAAGGCTTTCACCAACCCCATCATACCAACTTGCCAAAAGAGGGTCCCAAAACTAACCAATTTCTGCCGATCAAAAGGGTTCAATCCATGACAGCCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

444

Amino Acids

49.66

Weight (kDa)

5.25

Isoelectric Point (pI)

54.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 945
AciI CCGC 4 cut(s) 161, 185, 757, 943
AclWI GGATC 2 cut(s) 53, 488
AcoI YGGCCR 1 cut(s) 673
AcsI RAATTY 3 cut(s) 100, 548, 1085
AfaI GTAC 4 cut(s) 154, 316, 338, 688
AfiI CCNNNNNNNGG 3 cut(s) 197, 835, 1271
AgsI TTSAA 7 cut(s) 356, 553, 722, 1033, 1042, 1090, 1313
AjnI CCWGG 2 cut(s) 20, 124
AleI CACNNNNGTG 1 cut(s) 1184
AluBI AGCT 2 cut(s) 763, 1045
AluI AGCT 2 cut(s) 763, 1045
Alw21I GWGCWC 3 cut(s) 79, 1011, 1136
Alw26I GTCTC 2 cut(s) 284, 358
Alw44I GTGCAC 1 cut(s) 1132
AlwI GGATC 2 cut(s) 53, 488
AlwNI CAGNNNCTG 1 cut(s) 40
AoxI GGCC 2 cut(s) 252, 673
ApaLI GTGCAC 1 cut(s) 1132
ApeKI GCWGC 1 cut(s) 34
ApoI RAATTY 3 cut(s) 100, 548, 1085
ArsI GACNNNNNNTTYG 2 cut(s) 335, 367
Asp700I GAANNNNTTC 1 cut(s) 1236
AspS9I GGNCC 3 cut(s) 1109, 1156, 1274
AsuHPI GGTGA 4 cut(s) 17, 644, 1094, 1232
AvaII GGWCC 3 cut(s) 1109, 1156, 1274
BaeGI GKGCMC 1 cut(s) 1136
BauI CACGAG 1 cut(s) 1223
BbsI GAAGAC 1 cut(s) 600
Bbv12I GWGCWC 3 cut(s) 79, 1011, 1136
BbvCI CCTCAGC 1 cut(s) 30
BbvI GCAGC 1 cut(s) 46
BccI CCATC 8 cut(s) 64, 479, 623, 734, 764, 799, 974, 1257
BcgI CGANNNNNNTGC 4 cut(s) 47, 81, 988, 1022
BciT130I CCWGG 2 cut(s) 22, 126
BcoDI GTCTC 2 cut(s) 284, 358
BfaI CTAG 2 cut(s) 666, 810
BfmI CTRYAG 1 cut(s) 962
BisI GCNGC 3 cut(s) 35, 161, 185
BlsI GCNGC 3 cut(s) 36, 162, 186
BmcAI AGTACT 1 cut(s) 316
Bme1390I CCNGG 2 cut(s) 22, 126
Bme18I GGWCC 3 cut(s) 1109, 1156, 1274
BmgT120I GGNCC 3 cut(s) 1109, 1156, 1274
BmiI GGNNCC 6 cut(s) 19, 1111, 1157, 1158, 1275, 1276
BmrFI CCNGG 2 cut(s) 22, 126
BmrI ACTGGG 1 cut(s) 327
BmsI GCATC 5 cut(s) 46, 179, 576, 841, 985
BmuI ACTGGG 1 cut(s) 327
BoxI GACNNNNGTC 1 cut(s) 276
BpiI GAAGAC 1 cut(s) 600
BpmI CTGGAG 2 cut(s) 549, 857
Bpu10I CCTNAGC 1 cut(s) 30
BsaI GGTCTC 1 cut(s) 284
Bsc4I CCNNNNNNNGG 3 cut(s) 197, 835, 1271
Bse118I RCCGGY 1 cut(s) 671
Bse1I ACTGG 3 cut(s) 322, 732, 861
Bse3DI GCAATG 1 cut(s) 431
BseBI CCWGG 2 cut(s) 22, 126
BseGI GGATG 6 cut(s) 170, 490, 496, 791, 853, 1000
BseLI CCNNNNNNNGG 3 cut(s) 197, 835, 1271
BseMI GCAATG 1 cut(s) 431
BseMII CTCAG 3 cut(s) 44, 408, 639
BseNI ACTGG 3 cut(s) 322, 732, 861
BseRI GAGGAG 1 cut(s) 1115
BseSI GKGCMC 1 cut(s) 1136
BseXI GCAGC 1 cut(s) 46
Bsh1236I CGCG 1 cut(s) 945
Bsh1285I CGRYCG 1 cut(s) 833
BshFI GGCC 2 cut(s) 254, 675
BsiEI CGRYCG 1 cut(s) 833
BsiHKAI GWGCWC 3 cut(s) 79, 1011, 1136
BsiSI CCGG 1 cut(s) 672
BslFI GGGAC 5 cut(s) 337, 798, 1095, 1142, 1260
BslI CCNNNNNNNGG 3 cut(s) 197, 835, 1271
BsmAI GTCTC 2 cut(s) 284, 358
BsmFI GGGAC 5 cut(s) 337, 798, 1095, 1142, 1260
BsmI GAATGC 2 cut(s) 70, 616
BsnI GGCC 2 cut(s) 254, 675
Bso31I GGTCTC 1 cut(s) 284
Bsp1286I GDGCHC 3 cut(s) 79, 1011, 1136
Bsp143I GATC 4 cut(s) 58, 493, 830, 1299
BspACI CCGC 4 cut(s) 161, 185, 757, 943
BspANI GGCC 2 cut(s) 254, 675
BspCNI CTCAG 3 cut(s) 43, 409, 640
BspFNI CGCG 1 cut(s) 945
BspHI TCATGA 2 cut(s) 307, 700
BspLI GGNNCC 6 cut(s) 19, 1111, 1157, 1158, 1275, 1276
BspMAI CTGCAG 1 cut(s) 966
BspPI GGATC 2 cut(s) 53, 488
BspTNI GGTCTC 1 cut(s) 284
BsrDI GCAATG 1 cut(s) 431
BsrFI RCCGGY 1 cut(s) 671
BsrI ACTGG 3 cut(s) 322, 732, 861
BssAI RCCGGY 1 cut(s) 671
BssMI GATC 4 cut(s) 58, 493, 830, 1299
BssSI CACGAG 1 cut(s) 1223
Bst2BI CACGAG 1 cut(s) 1223
Bst2UI CCWGG 2 cut(s) 22, 126
Bst4CI ACNGT 3 cut(s) 336, 347, 697
Bst6I CTCTTC 2 cut(s) 356, 1122
BstC8I GCNNGC 4 cut(s) 47, 264, 871, 1136
BstDEI CTNAG 3 cut(s) 30, 417, 648
BstF5I GGATG 6 cut(s) 170, 490, 496, 791, 853, 1000
BstFNI CGCG 1 cut(s) 945
BstKTI GATC 4 cut(s) 61, 496, 833, 1302
BstMAI GTCTC 2 cut(s) 284, 358
BstMBI GATC 4 cut(s) 58, 493, 830, 1299
BstMCI CGRYCG 1 cut(s) 833
BstMWI GCNNNNNNNGC 2 cut(s) 74, 1058
BstNI CCWGG 2 cut(s) 22, 126
BstPAI GACNNNNGTC 1 cut(s) 276
BstSCI CCNGG 2 cut(s) 20, 124
BstSFI CTRYAG 1 cut(s) 962
BstSLI GKGCMC 1 cut(s) 1136
BstUI CGCG 1 cut(s) 945
BstV1I GCAGC 1 cut(s) 46
BstV2I GAAGAC 1 cut(s) 600
BsuRI GGCC 2 cut(s) 254, 675
BtgZI GCGATG 1 cut(s) 83
BtsCI GGATG 6 cut(s) 170, 490, 496, 791, 853, 1000
BtsI GCAGTG 2 cut(s) 443, 804
BtsIMutI CAGTG 3 cut(s) 352, 443, 804
Cac8I GCNNGC 4 cut(s) 47, 264, 871, 1136
CaiI CAGNNNCTG 1 cut(s) 40
CciI TCATGA 2 cut(s) 307, 700
Cfr10I RCCGGY 1 cut(s) 671
Cfr13I GGNCC 3 cut(s) 1109, 1156, 1274
Csp6I GTAC 4 cut(s) 153, 315, 337, 687
CviAII CATG 9 cut(s) 83, 259, 308, 590, 701, 817, 1077, 1318, 1327
CviQI GTAC 4 cut(s) 153, 315, 337, 687
DdeI CTNAG 3 cut(s) 30, 417, 648
DpnI GATC 4 cut(s) 60, 495, 832, 1301
DpnII GATC 4 cut(s) 58, 493, 830, 1299
DraI TTTAAA 1 cut(s) 517
EaeI YGGCCR 1 cut(s) 673
Eam1104I CTCTTC 2 cut(s) 356, 1122
EarI CTCTTC 2 cut(s) 356, 1122
Eco147I AGGCCT 1 cut(s) 254
Eco31I GGTCTC 1 cut(s) 284
Eco47I GGWCC 3 cut(s) 1109, 1156, 1274
EcoO109I RGGNCCY 3 cut(s) 1109, 1156, 1274
EcoRI GAATTC 2 cut(s) 548, 1085
EcoRII CCWGG 2 cut(s) 20, 124
EcoT22I ATGCAT 2 cut(s) 172, 591
FaeI CATG 9 cut(s) 86, 262, 311, 593, 704, 820, 1080, 1321, 1330
FaqI GGGAC 5 cut(s) 337, 798, 1095, 1142, 1260
FatI CATG 9 cut(s) 82, 258, 307, 589, 700, 816, 1076, 1317, 1326
FauNDI CATATG 1 cut(s) 166
Fnu4HI GCNGC 3 cut(s) 35, 161, 185
FokI GGATG 6 cut(s) 157, 497, 503, 778, 860, 1007
Fsp4HI GCNGC 3 cut(s) 35, 161, 185
FspBI CTAG 2 cut(s) 666, 810
GluI GCNGC 3 cut(s) 35, 161, 185
GsuI CTGGAG 2 cut(s) 549, 857
HaeIII GGCC 2 cut(s) 254, 675
HapII CCGG 1 cut(s) 672
Hin1II CATG 9 cut(s) 86, 262, 311, 593, 704, 820, 1080, 1321, 1330
HincII GTYRAC 1 cut(s) 376
HindII GTYRAC 1 cut(s) 376
HinfI GANTC 6 cut(s) 25, 366, 427, 454, 857, 902
HpaI GTTAAC 1 cut(s) 376
HpaII CCGG 1 cut(s) 672
HphI GGTGA 4 cut(s) 17, 644, 1094, 1232
Hpy166II GTNNAC 4 cut(s) 339, 376, 1134, 1191
Hpy188I TCNGA 8 cut(s) 63, 178, 248, 396, 418, 628, 684, 739
Hpy188III TCNNGA 5 cut(s) 308, 528, 701, 885, 977
Hpy8I GTNNAC 4 cut(s) 339, 376, 1134, 1191
HpyAV CCTTC 3 cut(s) 265, 1090, 1226
HpyCH4III ACNGT 3 cut(s) 336, 347, 697
HpyCH4V TGCA 9 cut(s) 170, 436, 589, 854, 873, 964, 1134, 1214, 1222
HpyF10VI GCNNNNNNNGC 2 cut(s) 74, 1058
HpyF3I CTNAG 3 cut(s) 30, 417, 648
Hsp92II CATG 9 cut(s) 86, 262, 311, 593, 704, 820, 1080, 1321, 1330
KflI GGGWCCC 2 cut(s) 1156, 1274
KspAI GTTAAC 1 cut(s) 376
Kzo9I GATC 4 cut(s) 58, 493, 830, 1299
LmnI GCTCC 2 cut(s) 17, 530
Lsp1109I GCAGC 1 cut(s) 46
LweI GCATC 5 cut(s) 46, 179, 576, 841, 985
MaeI CTAG 2 cut(s) 666, 810
MaeIII GTNAC 1 cut(s) 661
MalI GATC 4 cut(s) 60, 495, 832, 1301
MboI GATC 4 cut(s) 58, 493, 830, 1299
MboII GAAGA 8 cut(s) 20, 288, 373, 605, 614, 734, 934, 1139
MhlI GDGCHC 3 cut(s) 79, 1011, 1136
MluCI AATT 6 cut(s) 100, 548, 712, 972, 1085, 1289
MlyI GAGTC 1 cut(s) 360
MmeI TCCRAC 1 cut(s) 822
Mph1103I ATGCAT 2 cut(s) 172, 591
MroXI GAANNNNTTC 1 cut(s) 1236
MseI TTAA 3 cut(s) 375, 516, 890
MslI CAYNNNNRTG 3 cut(s) 134, 436, 1184
MspI CCGG 1 cut(s) 672
MspR9I CCNGG 2 cut(s) 22, 126
Mva1269I GAATGC 2 cut(s) 70, 616
MvaI CCWGG 2 cut(s) 22, 126
MvnI CGCG 1 cut(s) 945
MwoI GCNNNNNNNGC 2 cut(s) 74, 1058
NdeI CATATG 1 cut(s) 166
NdeII GATC 4 cut(s) 58, 493, 830, 1299
NlaIII CATG 9 cut(s) 86, 262, 311, 593, 704, 820, 1080, 1321, 1330
NlaIV GGNNCC 6 cut(s) 19, 1111, 1157, 1158, 1275, 1276
NsiI ATGCAT 2 cut(s) 172, 591
OliI CACNNNNGTG 1 cut(s) 1184
PagI TCATGA 2 cut(s) 307, 700
PceI AGGCCT 1 cut(s) 254
PctI GAATGC 2 cut(s) 70, 616
PdmI GAANNNNTTC 1 cut(s) 1236
PfeI GAWTC 5 cut(s) 25, 427, 454, 857, 902
PkrI GCNGC 3 cut(s) 36, 162, 186
Ple19I CGATCG 1 cut(s) 833
PleI GAGTC 1 cut(s) 360
PpsI GAGTC 1 cut(s) 360
PpuMI RGGWCCY 3 cut(s) 1109, 1156, 1274
PshAI GACNNNNGTC 1 cut(s) 276
Psp5II RGGWCCY 3 cut(s) 1109, 1156, 1274
Psp6I CCWGG 2 cut(s) 20, 124
PspGI CCWGG 2 cut(s) 20, 124
PspN4I GGNNCC 6 cut(s) 19, 1111, 1157, 1158, 1275, 1276
PspPI GGNCC 3 cut(s) 1109, 1156, 1274
PspPPI RGGWCCY 3 cut(s) 1109, 1156, 1274
PstI CTGCAG 1 cut(s) 966
PstNI CAGNNNCTG 1 cut(s) 40
PvuI CGATCG 1 cut(s) 833
RsaI GTAC 4 cut(s) 154, 316, 338, 688
RsaNI GTAC 4 cut(s) 153, 315, 337, 687
RseI CAYNNNNRTG 3 cut(s) 134, 436, 1184
SaqAI TTAA 3 cut(s) 375, 516, 890
SatI GCNGC 3 cut(s) 35, 161, 185
Sau3AI GATC 4 cut(s) 58, 493, 830, 1299
Sau96I GGNCC 3 cut(s) 1109, 1156, 1274
ScaI AGTACT 1 cut(s) 316
SchI GAGTC 1 cut(s) 360
ScrFI CCNGG 2 cut(s) 22, 126
SduI GDGCHC 3 cut(s) 79, 1011, 1136
SetI ASST 7 cut(s) 217, 223, 472, 765, 778, 1047, 1111
SfaNI GCATC 5 cut(s) 46, 179, 576, 841, 985
SfcI CTRYAG 1 cut(s) 962
SinI GGWCC 3 cut(s) 1109, 1156, 1274
SmiMI CAYNNNNRTG 3 cut(s) 134, 436, 1184
Sse9I AATT 6 cut(s) 100, 548, 712, 972, 1085, 1289
SseBI AGGCCT 1 cut(s) 254
SsiI CCGC 4 cut(s) 161, 185, 757, 943
SspMI CTAG 2 cut(s) 666, 810
StuI AGGCCT 1 cut(s) 254
StyD4I CCNGG 2 cut(s) 20, 124
TaaI ACNGT 3 cut(s) 336, 347, 697
TaqI TCGA 2 cut(s) 499, 1011
TasI AATT 6 cut(s) 100, 548, 712, 972, 1085, 1289
TatI WGTACW 2 cut(s) 314, 686
TauI GCSGC 2 cut(s) 163, 187
TfiI GAWTC 5 cut(s) 25, 427, 454, 857, 902
Tru1I TTAA 3 cut(s) 375, 516, 890
Tru9I TTAA 3 cut(s) 375, 516, 890
TscAI CASTG 3 cut(s) 352, 443, 811
TseI GCWGC 1 cut(s) 34
TspGWI ACGGA 2 cut(s) 372, 784
TspRI CASTG 3 cut(s) 352, 443, 811
VneI GTGCAC 1 cut(s) 1132
VpaK11BI GGWCC 3 cut(s) 1109, 1156, 1274
XapI RAATTY 3 cut(s) 100, 548, 1085
XmnI GAANNNNTTC 1 cut(s) 1236
XspI CTAG 2 cut(s) 666, 810
ZrmI AGTACT 1 cut(s) 316
Zsp2I ATGCAT 2 cut(s) 172, 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.