Rh7DG447800

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0003125
Physical Location & Seq
Forward (+)
63519348 .. 63523386
4039 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG447800.1

Sequence Viewer

Length: 1074 bp
ATGGGTGAAGATTTCAGATCTTGGATTCCGGAGCTGCATGAACGGCGACCGCCCGATCCATATTCCTTGGGTGCTCCTTTTGTCTTGGGGCAACAGAACTTCATTTCCGCATATAGAAACCCTGGCACTAGTATGCTTTTCACAAATGGAACTCTGCCATTATATGCATCGTCTGGGTTGCCCCATTCACAACTAGGCAGACCAAATGAACCTCACGGTTGGTTCTATTGCTGGCCCAGTATCCAACAGGCCTTCATGCCTGCTACACCACCCACTGTTCTCAAAGAGAAACTTTCTACTTGCTCATTCCAAAACCCTAAGGAGACATTGGTACCCTGTGTAGACCCTGACAGTAAACAGAAGAGATTGCTTGTCAGCAATCCGTCAGGGGATCAAACAAGTTTGGTCTTTAATTCTGGATTAGCGAATCCTTTGCAGTGCCCTACTTCTTGGGACCAACAAGGTGCTTACTATGTCAATGGGAATGATCGCGGAACTAATAGAGGTTTTCAAAACCCCTCAGGACCAATTTTGACTGATGAGTTAAAAGGAAGCGATGAATCTGGTGCTGAAAGTGAGATGCATGAAGACACGGAGGAACTGAATGCGTTGCTCTACTCAGATGATGAGAGTGATTATACAGAGGACGATGAAGTTACTAGCACAGGTCATTCCCCCAGTACAATGACAGTTCATGACAAGCAGAATTGGTTTGAAGCAAGGGAAGAAGTTGCTAGTTCTTGTGGAATAACTAAAAAGCGAAAGCTATTTGATGGAGGTTATGATGATGTATTGGACACTGCGAGTTCCAAGAAACCCAACAGATCAGCGGAGTTGGAGGATGATGCAGAATCCTGTTGTGCCTTCAACAGAAGTTCTGGGTCTAGAGAATTGGACTCCTCGTCCAGCAACAAGAAGATGAAGAAGGACAAAATACGCGAGACAGTGAGCATTCTGCAGGACATAATTCCGGGTGTCAAGGGGAAAGATGCAATGGTGGTGATCGATGAAGCCATCCACTACTTAAAATCGCTGAAGCTGAAGGCCAGAGCTTTCGGACTCCAGTCTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

357

Amino Acids

39.49

Weight (kDa)

4.98

Isoelectric Point (pI)

48.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH_SAC51 PF23173 303 - 348 7.7e-15 Transcription factor SAC51 bHLH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 331
AccB1I GGYRCC 1 cut(s) 331
AccI GTMKAC 1 cut(s) 342
AccII CGCG 2 cut(s) 492, 939
AccIII TCCGGA 1 cut(s) 28
AciI CCGC 4 cut(s) 50, 108, 492, 830
AclWI GGATC 2 cut(s) 50, 399
AcuI CTGAAG 2 cut(s) 1055, 1061
AfaI GTAC 2 cut(s) 333, 682
AgsI TTSAA 3 cut(s) 512, 716, 868
AhdI GACNNNNNGTC 1 cut(s) 901
AhlI ACTAGT 1 cut(s) 128
AjnI CCWGG 1 cut(s) 121
AloI GAACNNNNNNTCC 2 cut(s) 89, 121
AluBI AGCT 4 cut(s) 34, 766, 1039, 1052
AluI AGCT 4 cut(s) 34, 766, 1039, 1052
Alw21I GWGCWC 1 cut(s) 76
Alw26I GTCTC 2 cut(s) 317, 935
AlwI GGATC 2 cut(s) 50, 399
Aor13HI TCCGGA 1 cut(s) 28
AoxI GGCC 3 cut(s) 233, 249, 1044
ApeKI GCWGC 1 cut(s) 34
Asp718I GGTACC 1 cut(s) 331
AspS9I GGNCC 3 cut(s) 234, 454, 524
AsuC2I CCSGG 1 cut(s) 972
AsuHPI GGTGA 2 cut(s) 17, 1012
AvaII GGWCC 2 cut(s) 454, 524
AxyI CCTNAGG 2 cut(s) 318, 520
BaeGI GKGCMC 1 cut(s) 443
BaeI ACNNNNGTAYC 2 cut(s) 315, 348
BanI GGYRCC 1 cut(s) 331
BbsI GAAGAC 1 cut(s) 594
Bbv12I GWGCWC 1 cut(s) 76
BbvI GCAGC 1 cut(s) 21
BccI CCATC 2 cut(s) 767, 1022
BceAI ACGGC 1 cut(s) 59
BcgI CGANNNNNNTGC 2 cut(s) 415, 449
BciT130I CCWGG 1 cut(s) 123
BciVI GTATCC 1 cut(s) 251
BcnI CCSGG 1 cut(s) 972
BcoDI GTCTC 2 cut(s) 317, 935
BcuI ACTAGT 1 cut(s) 128
BfaI CTAG 5 cut(s) 129, 194, 660, 735, 885
BfmI CTRYAG 1 cut(s) 956
BfuI GTATCC 1 cut(s) 251
BglII AGATCT 1 cut(s) 17
BisI GCNGC 1 cut(s) 35
BlsI GCNGC 1 cut(s) 36
Bme1390I CCNGG 2 cut(s) 123, 972
Bme18I GGWCC 2 cut(s) 454, 524
BmeRI GACNNNNNGTC 1 cut(s) 901
BmgT120I GGNCC 3 cut(s) 234, 454, 524
BmiI GGNNCC 2 cut(s) 333, 455
BmrFI CCNGG 2 cut(s) 123, 972
BmrI ACTGGG 2 cut(s) 231, 672
BmsI GCATC 4 cut(s) 176, 570, 835, 979
BmuI ACTGGG 2 cut(s) 231, 672
BoxI GACNNNNGTC 1 cut(s) 1063
BpiI GAAGAC 1 cut(s) 594
BpmI CTGGAG 1 cut(s) 1046
BpuMI CCSGG 1 cut(s) 972
Bsa29I ATCGAT 1 cut(s) 1005
BsaJI CCNNGG 2 cut(s) 66, 121
BsaWI WCCGGW 1 cut(s) 28
Bse1I ACTGG 3 cut(s) 237, 678, 1063
Bse21I CCTNAGG 2 cut(s) 318, 520
Bse3DI GCAATG 1 cut(s) 999
BseAI TCCGGA 1 cut(s) 28
BseBI CCWGG 1 cut(s) 123
BseCI ATCGAT 1 cut(s) 1005
BseDI CCNNGG 2 cut(s) 66, 121
BseGI GGATG 2 cut(s) 847, 1014
BseMI GCAATG 1 cut(s) 999
BseMII CTCAG 2 cut(s) 534, 633
BseNI ACTGG 3 cut(s) 237, 678, 1063
BseRI GAGGAG 1 cut(s) 889
BseSI GKGCMC 1 cut(s) 443
BseXI GCAGC 1 cut(s) 21
Bsh1236I CGCG 2 cut(s) 492, 939
Bsh1285I CGRYCG 1 cut(s) 50
BshFI GGCC 3 cut(s) 235, 251, 1046
BshNI GGYRCC 1 cut(s) 331
BshVI ATCGAT 1 cut(s) 1005
BsiEI CGRYCG 1 cut(s) 50
BsiHKAI GWGCWC 1 cut(s) 76
BsiSI CCGG 2 cut(s) 29, 971
BslFI GGGAC 1 cut(s) 467
BsmAI GTCTC 2 cut(s) 317, 935
BsmFI GGGAC 1 cut(s) 467
BsmI GAATGC 2 cut(s) 610, 951
BsnI GGCC 3 cut(s) 235, 251, 1046
Bsp1286I GDGCHC 2 cut(s) 76, 443
Bsp13I TCCGGA 1 cut(s) 28
Bsp143I GATC 6 cut(s) 17, 55, 391, 487, 824, 1002
BspACI CCGC 4 cut(s) 50, 108, 492, 830
BspANI GGCC 3 cut(s) 235, 251, 1046
BspCNI CTCAG 2 cut(s) 533, 632
BspDI ATCGAT 1 cut(s) 1005
BspEI TCCGGA 1 cut(s) 28
BspFNI CGCG 2 cut(s) 492, 939
BspHI TCATGA 1 cut(s) 694
BspLI GGNNCC 2 cut(s) 333, 455
BspMAI CTGCAG 1 cut(s) 960
BspPI GGATC 2 cut(s) 50, 399
BspT107I GGYRCC 1 cut(s) 331
BsrDI GCAATG 1 cut(s) 999
BsrI ACTGG 3 cut(s) 237, 678, 1063
BssECI CCNNGG 2 cut(s) 66, 121
BssMI GATC 6 cut(s) 17, 55, 391, 487, 824, 1002
BssT1I CCWWGG 1 cut(s) 66
Bst2UI CCWGG 1 cut(s) 123
Bst4CI ACNGT 5 cut(s) 218, 277, 353, 691, 946
Bst6I CTCTTC 1 cut(s) 356
BstC8I GCNNGC 2 cut(s) 233, 261
BstDEI CTNAG 3 cut(s) 318, 520, 619
BstF5I GGATG 2 cut(s) 847, 1014
BstFNI CGCG 2 cut(s) 492, 939
BstKTI GATC 6 cut(s) 20, 58, 394, 490, 827, 1005
BstMAI GTCTC 2 cut(s) 317, 935
BstMBI GATC 6 cut(s) 17, 55, 391, 487, 824, 1002
BstMCI CGRYCG 1 cut(s) 50
BstMWI GCNNNNNNNGC 1 cut(s) 43
BstNI CCWGG 1 cut(s) 123
BstPAI GACNNNNGTC 1 cut(s) 1063
BstSCI CCNGG 2 cut(s) 121, 970
BstSFI CTRYAG 1 cut(s) 956
BstSLI GKGCMC 1 cut(s) 443
BstUI CGCG 2 cut(s) 492, 939
BstV1I GCAGC 1 cut(s) 21
BstV2I GAAGAC 1 cut(s) 594
BstX2I RGATCY 1 cut(s) 17
BstYI RGATCY 1 cut(s) 17
Bsu15I ATCGAT 1 cut(s) 1005
Bsu36I CCTNAGG 2 cut(s) 318, 520
BsuI GTATCC 1 cut(s) 251
BsuRI GGCC 3 cut(s) 235, 251, 1046
BsuTUI ATCGAT 1 cut(s) 1005
BtgZI GCGATG 1 cut(s) 570
BtsCI GGATG 2 cut(s) 847, 1014
BtsI GCAGTG 2 cut(s) 443, 798
BtsIMutI CAGTG 4 cut(s) 273, 443, 798, 951
Cac8I GCNNGC 2 cut(s) 233, 261
CciI TCATGA 1 cut(s) 694
Cfr13I GGNCC 3 cut(s) 234, 454, 524
ClaI ATCGAT 1 cut(s) 1005
Csp6I GTAC 2 cut(s) 332, 681
CviAII CATG 4 cut(s) 38, 256, 584, 695
CviJI RGCY 8 cut(s) 34, 235, 251, 766, 1013, 1039, 1046, 1052
CviKI_1 RGCY 8 cut(s) 34, 235, 251, 766, 1013, 1039, 1046, 1052
CviQI GTAC 2 cut(s) 332, 681
DdeI CTNAG 3 cut(s) 318, 520, 619
DpnI GATC 6 cut(s) 19, 57, 393, 489, 826, 1004
DpnII GATC 6 cut(s) 17, 55, 391, 487, 824, 1002
DriI GACNNNNNGTC 1 cut(s) 901
Eam1104I CTCTTC 1 cut(s) 356
Eam1105I GACNNNNNGTC 1 cut(s) 901
EarI CTCTTC 1 cut(s) 356
Eco130I CCWWGG 1 cut(s) 66
Eco147I AGGCCT 1 cut(s) 251
Eco47I GGWCC 2 cut(s) 454, 524
Eco57I CTGAAG 2 cut(s) 1055, 1061
Eco81I CCTNAGG 2 cut(s) 318, 520
EcoRII CCWGG 1 cut(s) 121
EcoT14I CCWWGG 1 cut(s) 66
EcoT22I ATGCAT 2 cut(s) 169, 585
ErhI CCWWGG 1 cut(s) 66
FaeI CATG 4 cut(s) 41, 259, 587, 698
FalI AAGNNNNNCTT 2 cut(s) 276, 308
FaqI GGGAC 1 cut(s) 467
FatI CATG 4 cut(s) 37, 255, 583, 694
FblI GTMKAC 1 cut(s) 342
Fnu4HI GCNGC 1 cut(s) 35
FokI GGATG 2 cut(s) 854, 1001
Fsp4HI GCNGC 1 cut(s) 35
FspBI CTAG 5 cut(s) 129, 194, 660, 735, 885
GluI GCNGC 1 cut(s) 35
GsuI CTGGAG 1 cut(s) 1046
HaeIII GGCC 3 cut(s) 235, 251, 1046
HapII CCGG 2 cut(s) 29, 971
Hin1II CATG 4 cut(s) 41, 259, 587, 698
HinfI GANTC 6 cut(s) 25, 427, 560, 851, 896, 1059
HpaII CCGG 2 cut(s) 29, 971
HphI GGTGA 2 cut(s) 17, 1012
Hpy166II GTNNAC 2 cut(s) 343, 356
Hpy188I TCNGA 4 cut(s) 17, 622, 1058, 1073
Hpy188III TCNNGA 5 cut(s) 29, 417, 522, 695, 885
Hpy8I GTNNAC 2 cut(s) 343, 356
HpyAV CCTTC 4 cut(s) 262, 874, 919, 1036
HpyCH4III ACNGT 5 cut(s) 218, 277, 353, 691, 946
HpyCH4V TGCA 7 cut(s) 37, 167, 436, 583, 848, 958, 992
HpyF10VI GCNNNNNNNGC 1 cut(s) 43
HpyF3I CTNAG 3 cut(s) 318, 520, 619
Hsp92II CATG 4 cut(s) 41, 259, 587, 698
Kpn2I TCCGGA 1 cut(s) 28
KpnI GGTACC 1 cut(s) 335
Kzo9I GATC 6 cut(s) 17, 55, 391, 487, 824, 1002
LmnI GCTCC 2 cut(s) 31, 79
Lsp1109I GCAGC 1 cut(s) 21
LweI GCATC 4 cut(s) 176, 570, 835, 979
MaeI CTAG 5 cut(s) 129, 194, 660, 735, 885
MaeIII GTNAC 1 cut(s) 655
MalI GATC 6 cut(s) 19, 57, 393, 489, 826, 1004
MboI GATC 6 cut(s) 17, 55, 391, 487, 824, 1002
MboII GAAGA 6 cut(s) 20, 373, 599, 737, 928, 934
MflI RGATCY 1 cut(s) 17
MhlI GDGCHC 2 cut(s) 76, 443
MluCI AATT 5 cut(s) 412, 528, 706, 890, 966
MlyI GAGTC 2 cut(s) 890, 1053
MmeI TCCRAC 2 cut(s) 268, 816
MnlI CCTC 8 cut(s) 222, 497, 529, 589, 637, 770, 832, 910
Mph1103I ATGCAT 2 cut(s) 169, 585
MroI TCCGGA 1 cut(s) 28
MseI TTAA 3 cut(s) 411, 545, 1025
MslI CAYNNNNRTG 1 cut(s) 131
MspA1I CMGCKG 1 cut(s) 830
MspI CCGG 2 cut(s) 29, 971
MspR9I CCNGG 2 cut(s) 123, 972
Mva1269I GAATGC 2 cut(s) 610, 951
MvaI CCWGG 1 cut(s) 123
MvnI CGCG 2 cut(s) 492, 939
MwoI GCNNNNNNNGC 1 cut(s) 43
NciI CCSGG 1 cut(s) 972
NdeII GATC 6 cut(s) 17, 55, 391, 487, 824, 1002
NlaIII CATG 4 cut(s) 41, 259, 587, 698
NlaIV GGNNCC 2 cut(s) 333, 455
NsiI ATGCAT 2 cut(s) 169, 585
PagI TCATGA 1 cut(s) 694
PceI AGGCCT 1 cut(s) 251
PctI GAATGC 2 cut(s) 610, 951
PfeI GAWTC 4 cut(s) 25, 427, 560, 851
PkrI GCNGC 1 cut(s) 36
PleI GAGTC 2 cut(s) 890, 1053
PpsI GAGTC 2 cut(s) 890, 1053
PshAI GACNNNNGTC 1 cut(s) 1063
Psp6I CCWGG 1 cut(s) 121
PspGI CCWGG 1 cut(s) 121
PspN4I GGNNCC 2 cut(s) 333, 455
PspPI GGNCC 3 cut(s) 234, 454, 524
PstI CTGCAG 1 cut(s) 960
PsuI RGATCY 1 cut(s) 17
RsaI GTAC 2 cut(s) 333, 682
RsaNI GTAC 2 cut(s) 332, 681
RseI CAYNNNNRTG 1 cut(s) 131
SaqAI TTAA 3 cut(s) 411, 545, 1025
SatI GCNGC 1 cut(s) 35
Sau3AI GATC 6 cut(s) 17, 55, 391, 487, 824, 1002
Sau96I GGNCC 3 cut(s) 234, 454, 524
SchI GAGTC 2 cut(s) 890, 1053
ScrFI CCNGG 2 cut(s) 123, 972
SduI GDGCHC 2 cut(s) 76, 443
SetI ASST 9 cut(s) 36, 214, 466, 508, 670, 768, 781, 1041, 1054
SfaNI GCATC 4 cut(s) 176, 570, 835, 979
SfcI CTRYAG 1 cut(s) 956
SinI GGWCC 2 cut(s) 454, 524
SmiMI CAYNNNNRTG 1 cut(s) 131
SpeI ACTAGT 1 cut(s) 128
Sse9I AATT 5 cut(s) 412, 528, 706, 890, 966
SseBI AGGCCT 1 cut(s) 251
SsiI CCGC 4 cut(s) 50, 108, 492, 830
SspMI CTAG 5 cut(s) 129, 194, 660, 735, 885
StuI AGGCCT 1 cut(s) 251
StyD4I CCNGG 2 cut(s) 121, 970
StyI CCWWGG 1 cut(s) 66
TaaI ACNGT 5 cut(s) 218, 277, 353, 691, 946
TaqI TCGA 1 cut(s) 1005
TasI AATT 5 cut(s) 412, 528, 706, 890, 966
TatI WGTACW 1 cut(s) 680
TfiI GAWTC 4 cut(s) 25, 427, 560, 851
Tru1I TTAA 3 cut(s) 411, 545, 1025
Tru9I TTAA 3 cut(s) 411, 545, 1025
TscAI CASTG 4 cut(s) 280, 443, 805, 951
TseI GCWGC 1 cut(s) 34
TspGWI ACGGA 2 cut(s) 372, 608
TspRI CASTG 4 cut(s) 280, 443, 805, 951
VpaK11BI GGWCC 2 cut(s) 454, 524
XbaI TCTAGA 1 cut(s) 884
XmiI GTMKAC 1 cut(s) 342
XspI CTAG 5 cut(s) 129, 194, 660, 735, 885
Zsp2I ATGCAT 2 cut(s) 169, 585
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.