Rorug04G0381500

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0003125
Physical Location & Seq
Reverse (-)
55198692 .. 55199890
1199 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0381500.1

Sequence Viewer

Length: 819 bp
ATGGCTCTGCAGGGAATCAGAGGTCCTTCTTATAGATTTCTCTATGGGAATGGCAAAGAAATCTTAAACATGCAAAAGGAAGCGATGAGCAGGCCCATAAGTCTATCACATGATATATTTCCTAGAGTTCAACCTCATATTCACTCATGGACCAAGACCTATGGGAAGAATTTTCTTCAATGGTATGGTCCTAAACCAGTTTTGGTCATTACAGAACCTGAGTTGTGCAAAGAGATCCTCAATAACAAAGAAGGAGTCTATCCAAAATCGAAGCCCAGTGAGTTTCTGAAGAAGCTAACAGGAGATAGTATTTCTATGACAGAAGGGGAAAAATGGGCCAAGTTAAGAAAGGTGTCCAACCATTCCTTTCATGGAGAGAGCTTAACAAATATGTTTCCAGATATAATAGCCAGTGCCGAGGCAATGGTAGAAAGGTGGAAAAATCATGACGGAAAAGAAATGGATATGTATGAAGAGTTTAGGTTGTTTACTTCTGAATCAATTTATTTCATTCAACGTCATGATCACTTCTCTATGTTTGGTCTTTCATTCAAAATTGCAGTAAGGTTTGTAGAACATCAGATTGAAGCACACAAGCTTGAGAAAGGAATACGTGCCTCCATAATGGAGATTGTTAAGAAAAGAGAACAAAAGGCAATAAAAATAACTGGGGAAAAAGAAATCTTGGGGAGTGATTTTCTGGGATTGCTTTTAAAGGCTCATCATGGTGCCAATGACAAGCAGCGGATTTCAATGAACGAATTGGTTGAAGAGTGCAGGACGTTTTACTTTGCTGGACAAGAAACTATAAAACCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

272

Amino Acids

31.54

Weight (kDa)

8.98

Isoelectric Point (pI)

33.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 47 - 191 1.5e-16 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 728
AciI CCGC 1 cut(s) 745
AclWI GGATC 1 cut(s) 229
AcsI RAATTY 1 cut(s) 169
AcuI CTGAAG 1 cut(s) 308
AgsI TTSAA 7 cut(s) 131, 179, 515, 553, 587, 753, 770
AluBI AGCT 3 cut(s) 295, 381, 598
AluI AGCT 3 cut(s) 295, 381, 598
AlwI GGATC 1 cut(s) 229
AlwNI CAGNNNCTG 1 cut(s) 218
AoxI GGCC 2 cut(s) 92, 336
ApeKI GCWGC 1 cut(s) 742
ApoI RAATTY 1 cut(s) 169
ArsI GACNNNNNNTTYG 2 cut(s) 240, 272
AspS9I GGNCC 5 cut(s) 23, 93, 150, 188, 336
AvaII GGWCC 3 cut(s) 23, 150, 188
BanI GGYRCC 1 cut(s) 728
BbvI GCAGC 1 cut(s) 754
BclI TGATCA 1 cut(s) 523
BfaI CTAG 1 cut(s) 123
BfmI CTRYAG 1 cut(s) 8
BisI GCNGC 1 cut(s) 743
BlsI GCNGC 1 cut(s) 744
Bme18I GGWCC 3 cut(s) 23, 150, 188
BmgT120I GGNCC 5 cut(s) 23, 93, 150, 188, 336
BmiI GGNNCC 1 cut(s) 730
BmrI ACTGGG 2 cut(s) 270, 678
BmuI ACTGGG 2 cut(s) 270, 678
BpuEI CTTGAG 1 cut(s) 620
BsaAI YACGTR 1 cut(s) 614
BsaJI CCNNGG 1 cut(s) 417
Bse1I ACTGG 4 cut(s) 197, 276, 411, 673
Bse3DI GCAATG 1 cut(s) 429
BseDI CCNNGG 1 cut(s) 417
BseMI GCAATG 1 cut(s) 429
BseMII CTCAG 1 cut(s) 210
BseNI ACTGG 4 cut(s) 197, 276, 411, 673
BseXI GCAGC 1 cut(s) 754
BsgI GTGCAG 1 cut(s) 796
BshFI GGCC 2 cut(s) 94, 338
BshNI GGYRCC 1 cut(s) 728
BsnI GGCC 2 cut(s) 94, 338
Bsp143I GATC 2 cut(s) 234, 523
BspACI CCGC 1 cut(s) 745
BspANI GGCC 2 cut(s) 94, 338
BspCNI CTCAG 1 cut(s) 211
BspHI TCATGA 2 cut(s) 445, 520
BspLI GGNNCC 1 cut(s) 730
BspMAI CTGCAG 1 cut(s) 12
BspPI GGATC 1 cut(s) 229
BspT107I GGYRCC 1 cut(s) 728
BsrDI GCAATG 1 cut(s) 429
BsrI ACTGG 4 cut(s) 197, 276, 411, 673
BssECI CCNNGG 1 cut(s) 417
BssMI GATC 2 cut(s) 234, 523
Bst6I CTCTTC 2 cut(s) 468, 765
BstBAI YACGTR 1 cut(s) 614
BstC8I GCNNGC 1 cut(s) 92
BstDEI CTNAG 1 cut(s) 219
BstKTI GATC 2 cut(s) 237, 526
BstMBI GATC 2 cut(s) 234, 523
BstNSI RCATGY 1 cut(s) 73
BstSFI CTRYAG 1 cut(s) 8
BstV1I GCAGC 1 cut(s) 754
BstX2I RGATCY 1 cut(s) 234
BstYI RGATCY 1 cut(s) 234
BsuRI GGCC 2 cut(s) 94, 338
BtgZI GCGATG 1 cut(s) 98
BtsIMutI CAGTG 2 cut(s) 283, 418
Cac8I GCNNGC 1 cut(s) 92
CaiI CAGNNNCTG 1 cut(s) 218
CciI TCATGA 2 cut(s) 445, 520
Cfr13I GGNCC 5 cut(s) 23, 93, 150, 188, 336
CviAII CATG 7 cut(s) 70, 110, 147, 371, 446, 521, 725
CviJI RGCY 9 cut(s) 5, 94, 274, 295, 338, 381, 410, 598, 719
CviKI_1 RGCY 9 cut(s) 5, 94, 274, 295, 338, 381, 410, 598, 719
DdeI CTNAG 1 cut(s) 219
DpnI GATC 2 cut(s) 236, 525
DpnII GATC 2 cut(s) 234, 523
DraI TTTAAA 1 cut(s) 714
Eam1104I CTCTTC 2 cut(s) 468, 765
EarI CTCTTC 2 cut(s) 468, 765
Eco47I GGWCC 3 cut(s) 23, 150, 188
Eco57I CTGAAG 1 cut(s) 308
EcoO109I RGGNCCY 1 cut(s) 23
FaeI CATG 7 cut(s) 73, 113, 150, 374, 449, 524, 728
FatI CATG 7 cut(s) 69, 109, 146, 370, 445, 520, 724
FbaI TGATCA 1 cut(s) 523
Fnu4HI GCNGC 1 cut(s) 743
Fsp4HI GCNGC 1 cut(s) 743
FspBI CTAG 1 cut(s) 123
GluI GCNGC 1 cut(s) 743
HaeIII GGCC 2 cut(s) 94, 338
Hin1II CATG 7 cut(s) 73, 113, 150, 374, 449, 524, 728
HindIII AAGCTT 1 cut(s) 596
HinfI GANTC 3 cut(s) 15, 255, 497
Hpy166II GTNNAC 1 cut(s) 489
Hpy188I TCNGA 4 cut(s) 20, 288, 496, 582
Hpy188III TCNNGA 3 cut(s) 398, 446, 521
Hpy8I GTNNAC 1 cut(s) 489
HpyAV CCTTC 3 cut(s) 36, 245, 317
HpyCH4IV ACGT 3 cut(s) 517, 613, 782
HpyCH4V TGCA 5 cut(s) 10, 73, 228, 560, 777
HpyF3I CTNAG 1 cut(s) 219
HpySE526I ACGT 3 cut(s) 517, 613, 782
Hsp92II CATG 7 cut(s) 73, 113, 150, 374, 449, 524, 728
Ksp22I TGATCA 1 cut(s) 523
Kzo9I GATC 2 cut(s) 234, 523
Lsp1109I GCAGC 1 cut(s) 754
MaeI CTAG 1 cut(s) 123
MaeII ACGT 3 cut(s) 517, 613, 782
MalI GATC 2 cut(s) 236, 525
MboI GATC 2 cut(s) 234, 523
MboII GAAGA 5 cut(s) 167, 178, 301, 485, 782
MflI RGATCY 1 cut(s) 234
MluCI AATT 4 cut(s) 169, 501, 555, 761
MlyI GAGTC 1 cut(s) 264
MmeI TCCRAC 1 cut(s) 381
MnlI CCTC 5 cut(s) 14, 144, 248, 412, 628
MseI TTAA 5 cut(s) 65, 344, 383, 636, 713
MslI CAYNNNNRTG 1 cut(s) 726
MspA1I CMGCKG 1 cut(s) 745
NdeII GATC 2 cut(s) 234, 523
NlaIII CATG 7 cut(s) 73, 113, 150, 374, 449, 524, 728
NlaIV GGNNCC 1 cut(s) 730
NmeAIII GCCGAG 1 cut(s) 442
NspI RCATGY 1 cut(s) 73
PagI TCATGA 2 cut(s) 445, 520
PfeI GAWTC 2 cut(s) 15, 497
PkrI GCNGC 1 cut(s) 744
PleI GAGTC 1 cut(s) 263
PpsI GAGTC 1 cut(s) 263
Ppu21I YACGTR 1 cut(s) 614
PpuMI RGGWCCY 1 cut(s) 23
Psp5II RGGWCCY 1 cut(s) 23
PspN4I GGNNCC 1 cut(s) 730
PspPI GGNCC 5 cut(s) 23, 93, 150, 188, 336
PspPPI RGGWCCY 1 cut(s) 23
PstI CTGCAG 1 cut(s) 12
PstNI CAGNNNCTG 1 cut(s) 218
PsuI RGATCY 1 cut(s) 234
RseI CAYNNNNRTG 1 cut(s) 726
SaqAI TTAA 5 cut(s) 65, 344, 383, 636, 713
SatI GCNGC 1 cut(s) 743
Sau3AI GATC 2 cut(s) 234, 523
Sau96I GGNCC 5 cut(s) 23, 93, 150, 188, 336
SchI GAGTC 1 cut(s) 264
SfcI CTRYAG 1 cut(s) 8
SinI GGWCC 3 cut(s) 23, 150, 188
SmiMI CAYNNNNRTG 1 cut(s) 726
SmlI CTYRAG 1 cut(s) 599
SmoI CTYRAG 1 cut(s) 599
Sse9I AATT 4 cut(s) 169, 501, 555, 761
SsiI CCGC 1 cut(s) 745
SspMI CTAG 1 cut(s) 123
TaiI ACGT 3 cut(s) 520, 616, 785
TaqI TCGA 1 cut(s) 269
TasI AATT 4 cut(s) 169, 501, 555, 761
TfiI GAWTC 2 cut(s) 15, 497
Tru1I TTAA 5 cut(s) 65, 344, 383, 636, 713
Tru9I TTAA 5 cut(s) 65, 344, 383, 636, 713
TscAI CASTG 2 cut(s) 283, 418
TseI GCWGC 1 cut(s) 742
TspDTI ATGAA 5 cut(s) 359, 486, 499, 537, 770
TspGWI ACGGA 1 cut(s) 465
TspRI CASTG 2 cut(s) 283, 418
VpaK11BI GGWCC 3 cut(s) 23, 150, 188
XapI RAATTY 1 cut(s) 169
XceI RCATGY 1 cut(s) 73
XcmI CCANNNNNNNNNTGG 1 cut(s) 368
XspI CTAG 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.