AT5G51510

Jagunal, ER re-organisation during oogenesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0005333
Physical Location & Seq
Forward (+)
20921377 .. 20922998
1622 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G51510.1

Sequence Viewer

Length: 513 bp
ATGCAGCAGAGGAAGCCGACGGCGGGTAGACCCAGTGGTACCGATGGATCCGATTTCTCATACCGCATGGTCGTTGACTCTCGTTACACGAAGGTCACTAAAGAAAAAGCTCGTCTCCGTCCTTTGATCTTTGTTCAGGCTGCGATTTATGTAATCGGATTATCGTGTGCGTTTCTAACAACAACTAAAAAGGATGAGAAGAACACCCTTGCTATTGCAGCTGCTGTTGCTGGCTTAGTGTGTTCATTGATAGGAGAATTAGGTTGCAGACGTAGCAGAGTAAACCTTTTGAGGCTCTACACGGCTGCATCAACCATTGTTATGGTTCTTTCTGTGTTTTGTGCTGTTAGGAGCAGATTAACCATGGAGGAACGCAATAGCTCTGGAACAACCGCGAAGCTTGAGCTCGCAGGTTTCATTTGTGCTCAATTAGGAGCGGTGGTGCAGATATTAGCGATCATCGTTACAGGGTCCCTTGTCAATAATATGTCTCCACCTACGAAAGCAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jagunal

Protein Analysis

170

Amino Acids

18.23

Weight (kDa)

9.98

Isoelectric Point (pI)

32.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jagunal PF07086 10 - 154 1.8e-09 Jagunal, ER re-organisation during oogenesis
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 401
Acc65I GGTACC 1 cut(s) 38
AccB1I GGYRCC 1 cut(s) 38
AccBSI CCGCTC 1 cut(s) 437
AccI GTMKAC 1 cut(s) 28
AccII CGCG 1 cut(s) 395
AciI CCGC 4 cut(s) 23, 64, 393, 437
AclWI GGATC 2 cut(s) 42, 55
AfaI GTAC 1 cut(s) 40
AfiI CCNNNNNNNGG 1 cut(s) 23
AluBI AGCT 5 cut(s) 110, 221, 381, 400, 406
AluI AGCT 5 cut(s) 110, 221, 381, 400, 406
Alw21I GWGCWC 2 cut(s) 408, 427
Alw26I GTCTC 2 cut(s) 119, 495
AlwI GGATC 2 cut(s) 42, 55
AlwNI CAGNNNCTG 1 cut(s) 224
ApeKI GCWGC 6 cut(s) 4, 140, 218, 221, 305, 506
Asp718I GGTACC 1 cut(s) 38
AspS9I GGNCC 1 cut(s) 471
AvaII GGWCC 1 cut(s) 471
BamHI GGATCC 1 cut(s) 47
BanI GGYRCC 1 cut(s) 38
BanII GRGCYC 1 cut(s) 408
Bbv12I GWGCWC 2 cut(s) 408, 427
BbvI GCAGC 5 cut(s) 16, 127, 208, 230, 292
BccI CCATC 1 cut(s) 38
BceAI ACGGC 2 cut(s) 36, 318
BcoDI GTCTC 2 cut(s) 119, 495
BfuAI ACCTGC 1 cut(s) 401
BisI GCNGC 6 cut(s) 5, 141, 219, 222, 306, 507
BlsI GCNGC 6 cut(s) 6, 142, 220, 223, 307, 508
Bme18I GGWCC 1 cut(s) 471
BmgT120I GGNCC 1 cut(s) 471
BmiI GGNNCC 4 cut(s) 40, 49, 472, 473
BmrI ACTGGG 1 cut(s) 27
BmsI GCATC 1 cut(s) 317
BmuI ACTGGG 1 cut(s) 27
BpuEI CTTGAG 1 cut(s) 422
BsaJI CCNNGG 1 cut(s) 363
BsaXI ACNNNNNCTCC 2 cut(s) 426, 456
Bsc4I CCNNNNNNNGG 1 cut(s) 23
Bse1I ACTGG 1 cut(s) 33
BseDI CCNNGG 1 cut(s) 363
BseGI GGATG 1 cut(s) 199
BseLI CCNNNNNNNGG 1 cut(s) 23
BseNI ACTGG 1 cut(s) 33
BseXI GCAGC 5 cut(s) 16, 127, 208, 230, 292
BsgI GTGCAG 1 cut(s) 464
Bsh1236I CGCG 1 cut(s) 395
BshNI GGYRCC 1 cut(s) 38
BsiHKAI GWGCWC 2 cut(s) 408, 427
BslFI GGGAC 1 cut(s) 457
BslI CCNNNNNNNGG 1 cut(s) 23
BsmAI GTCTC 2 cut(s) 119, 495
BsmBI CGTCTC 1 cut(s) 119
BsmFI GGGAC 1 cut(s) 457
Bsp1286I GDGCHC 2 cut(s) 408, 427
Bsp143I GATC 3 cut(s) 47, 126, 456
Bsp19I CCATGG 1 cut(s) 363
BspACI CCGC 4 cut(s) 23, 64, 393, 437
BspFNI CGCG 1 cut(s) 395
BspLI GGNNCC 4 cut(s) 40, 49, 472, 473
BspMI ACCTGC 1 cut(s) 401
BspPI GGATC 2 cut(s) 42, 55
BspT107I GGYRCC 1 cut(s) 38
BsrBI CCGCTC 1 cut(s) 437
BsrI ACTGG 1 cut(s) 33
BssECI CCNNGG 1 cut(s) 363
BssMI GATC 3 cut(s) 47, 126, 456
BssT1I CCWWGG 1 cut(s) 363
BstC8I GCNNGC 2 cut(s) 232, 408
BstDEI CTNAG 1 cut(s) 235
BstDSI CCRYGG 1 cut(s) 363
BstF5I GGATG 1 cut(s) 199
BstFNI CGCG 1 cut(s) 395
BstKTI GATC 3 cut(s) 50, 129, 459
BstMAI GTCTC 2 cut(s) 119, 495
BstMBI GATC 3 cut(s) 47, 126, 456
BstMWI GCNNNNNNNGC 4 cut(s) 13, 218, 227, 273
BstUI CGCG 1 cut(s) 395
BstV1I GCAGC 5 cut(s) 16, 127, 208, 230, 292
BstX2I RGATCY 1 cut(s) 47
BstXI CCANNNNNNTGG 1 cut(s) 322
BstYI RGATCY 1 cut(s) 47
BtgI CCRYGG 1 cut(s) 363
BtsCI GGATG 1 cut(s) 199
BtsIMutI CAGTG 1 cut(s) 40
BveI ACCTGC 1 cut(s) 401
Cac8I GCNNGC 2 cut(s) 232, 408
CaiI CAGNNNCTG 1 cut(s) 224
Cfr13I GGNCC 1 cut(s) 471
Csp6I GTAC 1 cut(s) 39
CviAII CATG 2 cut(s) 67, 364
CviQI GTAC 1 cut(s) 39
DdeI CTNAG 1 cut(s) 235
DpnI GATC 3 cut(s) 49, 128, 458
DpnII GATC 3 cut(s) 47, 126, 456
Ecl136II GAGCTC 1 cut(s) 406
Eco130I CCWWGG 1 cut(s) 363
Eco24I GRGCYC 1 cut(s) 408
Eco47I GGWCC 1 cut(s) 471
Eco53kI GAGCTC 1 cut(s) 406
EcoICRI GAGCTC 1 cut(s) 406
EcoO109I RGGNCCY 1 cut(s) 471
EcoT14I CCWWGG 1 cut(s) 363
EcoT38I GRGCYC 1 cut(s) 408
ErhI CCWWGG 1 cut(s) 363
Esp3I CGTCTC 1 cut(s) 119
FaeI CATG 2 cut(s) 70, 367
FaiI YATR 7 cut(s) 61, 68, 150, 323, 365, 488, 511
FaqI GGGAC 1 cut(s) 457
FatI CATG 2 cut(s) 66, 363
FauI CCCGC 1 cut(s) 16
FblI GTMKAC 1 cut(s) 28
Fnu4HI GCNGC 6 cut(s) 5, 141, 219, 222, 306, 507
FokI GGATG 1 cut(s) 206
FriOI GRGCYC 1 cut(s) 408
Fsp4HI GCNGC 6 cut(s) 5, 141, 219, 222, 306, 507
GluI GCNGC 6 cut(s) 5, 141, 219, 222, 306, 507
Hin1II CATG 2 cut(s) 70, 367
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HindIII AAGCTT 1 cut(s) 398
HinfI GANTC 1 cut(s) 77
Hpy166II GTNNAC 3 cut(s) 29, 76, 283
Hpy188I TCNGA 2 cut(s) 52, 158
Hpy188III TCNNGA 1 cut(s) 384
Hpy8I GTNNAC 3 cut(s) 29, 76, 283
Hpy99I CGWCG 1 cut(s) 22
HpyAV CCTTC 1 cut(s) 85
HpyCH4IV ACGT 1 cut(s) 271
HpyCH4V TGCA 5 cut(s) 4, 218, 267, 308, 445
HpyF10VI GCNNNNNNNGC 4 cut(s) 13, 218, 227, 273
HpyF3I CTNAG 1 cut(s) 235
HpySE526I ACGT 1 cut(s) 271
Hsp92II CATG 2 cut(s) 70, 367
KflI GGGWCCC 1 cut(s) 471
KpnI GGTACC 1 cut(s) 42
Kzo9I GATC 3 cut(s) 47, 126, 456
LmnI GCTCC 2 cut(s) 351, 434
LpnPI CCDG 6 cut(s) 46, 122, 216, 369, 396, 453
Lsp1109I GCAGC 5 cut(s) 16, 127, 208, 230, 292
LweI GCATC 1 cut(s) 317
MaeII ACGT 1 cut(s) 271
MaeIII GTNAC 3 cut(s) 83, 94, 463
MalI GATC 3 cut(s) 49, 128, 458
MbiI CCGCTC 1 cut(s) 437
MboI GATC 3 cut(s) 47, 126, 456
MboII GAAGA 1 cut(s) 211
MflI RGATCY 1 cut(s) 47
MhlI GDGCHC 2 cut(s) 408, 427
MluCI AATT 2 cut(s) 257, 428
MlyI GAGTC 1 cut(s) 71
MnlI CCTC 3 cut(s) 3, 285, 361
MseI TTAA 1 cut(s) 359
MslI CAYNNNNRTG 1 cut(s) 320
MspA1I CMGCKG 1 cut(s) 221
MvnI CGCG 1 cut(s) 395
MwoI GCNNNNNNNGC 4 cut(s) 13, 218, 227, 273
NcoI CCATGG 1 cut(s) 363
NdeII GATC 3 cut(s) 47, 126, 456
NlaIII CATG 2 cut(s) 70, 367
NlaIV GGNNCC 4 cut(s) 40, 49, 472, 473
NmuCI GTSAC 1 cut(s) 94
PkrI GCNGC 6 cut(s) 6, 142, 220, 223, 307, 508
PleI GAGTC 1 cut(s) 71
PpsI GAGTC 1 cut(s) 71
PpuMI RGGWCCY 1 cut(s) 471
Psp124BI GAGCTC 1 cut(s) 408
Psp5II RGGWCCY 1 cut(s) 471
PspN4I GGNNCC 4 cut(s) 40, 49, 472, 473
PspPI GGNCC 1 cut(s) 471
PspPPI RGGWCCY 1 cut(s) 471
PstNI CAGNNNCTG 1 cut(s) 224
PsuI RGATCY 1 cut(s) 47
PvuII CAGCTG 1 cut(s) 221
RsaI GTAC 1 cut(s) 40
RsaNI GTAC 1 cut(s) 39
RseI CAYNNNNRTG 1 cut(s) 320
SacI GAGCTC 1 cut(s) 408
SaqAI TTAA 1 cut(s) 359
SatI GCNGC 6 cut(s) 5, 141, 219, 222, 306, 507
Sau3AI GATC 3 cut(s) 47, 126, 456
Sau96I GGNCC 1 cut(s) 471
SchI GAGTC 1 cut(s) 71
SduI GDGCHC 2 cut(s) 408, 427
SfaNI GCATC 1 cut(s) 317
SinI GGWCC 1 cut(s) 471
SmiMI CAYNNNNRTG 1 cut(s) 320
SmlI CTYRAG 1 cut(s) 401
SmoI CTYRAG 1 cut(s) 401
Sse9I AATT 2 cut(s) 257, 428
SsiI CCGC 4 cut(s) 23, 64, 393, 437
SstI GAGCTC 1 cut(s) 408
StyI CCWWGG 1 cut(s) 363
TaiI ACGT 1 cut(s) 274
TasI AATT 2 cut(s) 257, 428
Tru1I TTAA 1 cut(s) 359
Tru9I TTAA 1 cut(s) 359
TscAI CASTG 1 cut(s) 40
TseFI GTSAC 1 cut(s) 94
TseI GCWGC 6 cut(s) 4, 140, 218, 221, 305, 506
Tsp45I GTSAC 1 cut(s) 94
TspDTI ATGAA 2 cut(s) 234, 406
TspGWI ACGGA 1 cut(s) 107
TspRI CASTG 1 cut(s) 40
VpaK11BI GGWCC 1 cut(s) 471
XmiI GTMKAC 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.