Jagunal, ER re-organisation during oogenesis
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G51510 |
| fragaria_vesca | FvH4_4g13180 FvH4_4g13180 FvH4_4g13180 |
| malus_domestica | MD07G1255100.v1.1 |
| prunus_persica | Prupe.2G278900_v2.0.a1 Prupe.2G279400_v2.0.a1 |
| pyrus_communis | pycom01g19500 pycom07g22830 |
| rosa_chinensis | RchiOBHm_Chr4g0409771 RchiOBHm_Chr4g0413311 |
| rosa_laevigata | RLG00000008225 |
| rosa_multiflora | Rmu_sc0009573.1_g000005 Rmu_sc0009860.1_g000004 |
| rosa_roxburghii | Rroxscaffold_5G00357240 |
| rosa_rugosa | Rorug04G0119500 Rorug04G0119600 Rorug04G0119700 Rorug04G0119800 Rorug04G0119900 |
| rosa_samantha | Rh2BG188800 Rh4AG179300 Rh4BG178400 Rh4CG189900 Rh4DG174400 Rh5AG393900 Rh6DG341500 Rh7BG185600 |
| rosa_wichuraiana | Rw4G014900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 284, 302 |
| AcsI | RAATTY | 1 cut(s) | 217 |
| AgsI | TTSAA | 2 cut(s) | 11, 154 |
| ApeKI | GCWGC | 1 cut(s) | 135 |
| ApoI | RAATTY | 1 cut(s) | 217 |
| AspS9I | GGNCC | 1 cut(s) | 59 |
| AvaII | GGWCC | 1 cut(s) | 59 |
| BbsI | GAAGAC | 1 cut(s) | 136 |
| BbvI | GCAGC | 1 cut(s) | 147 |
| BclI | TGATCA | 1 cut(s) | 108 |
| BfmI | CTRYAG | 1 cut(s) | 210 |
| BisI | GCNGC | 1 cut(s) | 136 |
| BlsI | GCNGC | 1 cut(s) | 137 |
| Bme18I | GGWCC | 1 cut(s) | 59 |
| BmgT120I | GGNCC | 1 cut(s) | 59 |
| BmiI | GGNNCC | 1 cut(s) | 61 |
| BmrI | ACTGGG | 2 cut(s) | 123, 262 |
| BmsI | GCATC | 1 cut(s) | 179 |
| BmuI | ACTGGG | 2 cut(s) | 123, 262 |
| BpiI | GAAGAC | 1 cut(s) | 136 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 12, 44 |
| Bse1I | ACTGG | 2 cut(s) | 118, 257 |
| Bse3DI | GCAATG | 1 cut(s) | 195 |
| BseMI | GCAATG | 1 cut(s) | 195 |
| BseNI | ACTGG | 2 cut(s) | 118, 257 |
| BseXI | GCAGC | 1 cut(s) | 147 |
| BslFI | GGGAC | 1 cut(s) | 45 |
| BsmFI | GGGAC | 1 cut(s) | 45 |
| Bsp143I | GATC | 1 cut(s) | 108 |
| BspLI | GGNNCC | 1 cut(s) | 61 |
| BsrDI | GCAATG | 1 cut(s) | 195 |
| BsrI | ACTGG | 2 cut(s) | 118, 257 |
| BssMI | GATC | 1 cut(s) | 108 |
| BstKTI | GATC | 1 cut(s) | 111 |
| BstMBI | GATC | 1 cut(s) | 108 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 206 |
| BstSFI | CTRYAG | 1 cut(s) | 210 |
| BstV1I | GCAGC | 1 cut(s) | 147 |
| BstV2I | GAAGAC | 1 cut(s) | 136 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 252 |
| BtsIMutI | CAGTG | 1 cut(s) | 111 |
| Cfr13I | GGNCC | 1 cut(s) | 59 |
| CseI | GACGC | 1 cut(s) | 141 |
| CviJI | RGCY | 1 cut(s) | 138 |
| CviKI_1 | RGCY | 1 cut(s) | 138 |
| DpnI | GATC | 1 cut(s) | 110 |
| DpnII | GATC | 1 cut(s) | 108 |
| Eco47I | GGWCC | 1 cut(s) | 59 |
| EcoO109I | RGGNCCY | 1 cut(s) | 59 |
| FaiI | YATR | 3 cut(s) | 284, 302, 309 |
| FaqI | GGGAC | 1 cut(s) | 45 |
| FbaI | TGATCA | 1 cut(s) | 108 |
| Fnu4HI | GCNGC | 1 cut(s) | 136 |
| Fsp4HI | GCNGC | 1 cut(s) | 136 |
| GluI | GCNGC | 1 cut(s) | 136 |
| HgaI | GACGC | 1 cut(s) | 141 |
| HinfI | GANTC | 1 cut(s) | 21 |
| Hpy166II | GTNNAC | 2 cut(s) | 160, 270 |
| Hpy8I | GTNNAC | 2 cut(s) | 160, 270 |
| HpyAV | CCTTC | 1 cut(s) | 50 |
| HpyCH4V | TGCA | 1 cut(s) | 170 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 206 |
| Ksp22I | TGATCA | 1 cut(s) | 108 |
| Kzo9I | GATC | 1 cut(s) | 108 |
| LpnPI | CCDG | 3 cut(s) | 99, 198, 238 |
| Lsp1109I | GCAGC | 1 cut(s) | 147 |
| LweI | GCATC | 1 cut(s) | 179 |
| MaeIII | GTNAC | 1 cut(s) | 248 |
| MalI | GATC | 1 cut(s) | 110 |
| MboI | GATC | 1 cut(s) | 108 |
| MboII | GAAGA | 1 cut(s) | 141 |
| MfeI | CAATTG | 1 cut(s) | 11 |
| MluCI | AATT | 6 cut(s) | 11, 217, 279, 290, 303, 316 |
| MlyI | GAGTC | 1 cut(s) | 30 |
| MnlI | CCTC | 1 cut(s) | 223 |
| MseI | TTAA | 3 cut(s) | 221, 315, 319 |
| MunI | CAATTG | 1 cut(s) | 11 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 206 |
| NdeII | GATC | 1 cut(s) | 108 |
| NlaIV | GGNNCC | 1 cut(s) | 61 |
| NmeAIII | GCCGAG | 1 cut(s) | 164 |
| PacI | TTAATTAA | 1 cut(s) | 319 |
| PkrI | GCNGC | 1 cut(s) | 137 |
| PleI | GAGTC | 1 cut(s) | 29 |
| PpsI | GAGTC | 1 cut(s) | 29 |
| PpuMI | RGGWCCY | 1 cut(s) | 59 |
| PsiI | TTATAA | 2 cut(s) | 284, 302 |
| Psp5II | RGGWCCY | 1 cut(s) | 59 |
| PspN4I | GGNNCC | 1 cut(s) | 61 |
| PspPI | GGNCC | 1 cut(s) | 59 |
| PspPPI | RGGWCCY | 1 cut(s) | 59 |
| SaqAI | TTAA | 3 cut(s) | 221, 315, 319 |
| SatI | GCNGC | 1 cut(s) | 136 |
| Sau3AI | GATC | 1 cut(s) | 108 |
| Sau96I | GGNCC | 1 cut(s) | 59 |
| SchI | GAGTC | 1 cut(s) | 30 |
| SetI | ASST | 3 cut(s) | 61, 127, 234 |
| SfaNI | GCATC | 1 cut(s) | 179 |
| SfcI | CTRYAG | 1 cut(s) | 210 |
| SgeI | CNNG | 7 cut(s) | 41, 126, 152, 213, 225, 258, 265 |
| SinI | GGWCC | 1 cut(s) | 59 |
| Sse9I | AATT | 6 cut(s) | 11, 217, 279, 290, 303, 316 |
| TaqI | TCGA | 1 cut(s) | 127 |
| TasI | AATT | 6 cut(s) | 11, 217, 279, 290, 303, 316 |
| Tru1I | TTAA | 3 cut(s) | 221, 315, 319 |
| Tru9I | TTAA | 3 cut(s) | 221, 315, 319 |
| TscAI | CASTG | 1 cut(s) | 118 |
| TseI | GCWGC | 1 cut(s) | 135 |
| TspDTI | ATGAA | 1 cut(s) | 69 |
| TspRI | CASTG | 1 cut(s) | 118 |
| VpaK11BI | GGWCC | 1 cut(s) | 59 |
| XapI | RAATTY | 1 cut(s) | 217 |