Rh6DG341500

Jagunal, ER re-organisation during oogenesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0005333
Physical Location & Seq
Forward (+)
54436799 .. 54438756
1958 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG341500.1

Sequence Viewer

Length: 342 bp
ATGACGCGGTCAACGGAGCTCATCACCGGGGTGAAGACCCCGATGAAGGTCCCGAAGTCGCAACTAAAGGTTGTCTTTCAGCTGATAGGAGTCCTATATACATTTCTTTTTACTTCCAAAGGGGAAGGTCCTGATGTGATTGCTATCTCTTCTATAGCTATTGGTTCAATTTCTTTGATACTTGGGGACTTAGGTCGAAGGCGTAGTCGAGTAACTTTGTTGAAAGTTTACATGGTTGCATCATCTATTGGAGTGCTTCTTTCCATTGCTTGTGTTGCCAAGGCGAATGTAACATTAGAGGTTTTCCAAACTCCCAATAGATGGGAAACCCACAAGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jagunal

Protein Analysis

113

Amino Acids

12.35

Weight (kDa)

10.17

Isoelectric Point (pI)

44.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 321
AccII CGCG 1 cut(s) 7
AciI CCGC 1 cut(s) 7
AfiI CCNNNNNNNGG 2 cut(s) 46, 321
AgsI TTSAA 2 cut(s) 168, 223
AleI CACNNNNGTG 1 cut(s) 29
AluBI AGCT 3 cut(s) 19, 82, 158
AluI AGCT 3 cut(s) 19, 82, 158
Alw21I GWGCWC 1 cut(s) 21
ArsI GACNNNNNNTTYG 2 cut(s) 190, 222
AspS9I GGNCC 2 cut(s) 49, 128
AsuC2I CCSGG 1 cut(s) 28
AsuHPI GGTGA 2 cut(s) 16, 43
AvaII GGWCC 2 cut(s) 49, 128
BanII GRGCYC 1 cut(s) 21
BbsI GAAGAC 1 cut(s) 41
Bbv12I GWGCWC 1 cut(s) 21
BccI CCATC 1 cut(s) 315
BcnI CCSGG 1 cut(s) 28
BfmI CTRYAG 1 cut(s) 153
Bme1390I CCNGG 1 cut(s) 28
Bme18I GGWCC 2 cut(s) 49, 128
BmgT120I GGNCC 2 cut(s) 49, 128
BmiI GGNNCC 1 cut(s) 51
BmrFI CCNGG 1 cut(s) 28
BmsI GCATC 1 cut(s) 248
BoxI GACNNNNGTC 1 cut(s) 192
BpiI GAAGAC 1 cut(s) 41
BpuMI CCSGG 1 cut(s) 28
BsaBI GATNNNNATC 1 cut(s) 143
BsaJI CCNNGG 2 cut(s) 27, 279
Bsc4I CCNNNNNNNGG 2 cut(s) 46, 321
Bse3DI GCAATG 1 cut(s) 264
Bse8I GATNNNNATC 1 cut(s) 143
BseDI CCNNGG 2 cut(s) 27, 279
BseJI GATNNNNATC 1 cut(s) 143
BseLI CCNNNNNNNGG 2 cut(s) 46, 321
BseMI GCAATG 1 cut(s) 264
Bsh1236I CGCG 1 cut(s) 7
BsiHKAI GWGCWC 1 cut(s) 21
BsiSI CCGG 1 cut(s) 27
BslFI GGGAC 2 cut(s) 35, 200
BslI CCNNNNNNNGG 2 cut(s) 46, 321
BsmFI GGGAC 2 cut(s) 35, 200
Bsp1286I GDGCHC 1 cut(s) 21
BspACI CCGC 1 cut(s) 7
BspFNI CGCG 1 cut(s) 7
BspLI GGNNCC 1 cut(s) 51
BsrDI GCAATG 1 cut(s) 264
BssECI CCNNGG 2 cut(s) 27, 279
BssT1I CCWWGG 1 cut(s) 279
Bst6I CTCTTC 1 cut(s) 154
BstDEI CTNAG 1 cut(s) 190
BstFNI CGCG 1 cut(s) 7
BstMWI GCNNNNNNNGC 1 cut(s) 275
BstPAI GACNNNNGTC 1 cut(s) 192
BstSCI CCNGG 1 cut(s) 26
BstSFI CTRYAG 1 cut(s) 153
BstUI CGCG 1 cut(s) 7
BstV2I GAAGAC 1 cut(s) 41
Cfr13I GGNCC 2 cut(s) 49, 128
CseI GACGC 1 cut(s) 13
CviAII CATG 1 cut(s) 232
CviJI RGCY 3 cut(s) 19, 82, 158
CviKI_1 RGCY 3 cut(s) 19, 82, 158
DdeI CTNAG 1 cut(s) 190
Eam1104I CTCTTC 1 cut(s) 154
EarI CTCTTC 1 cut(s) 154
Ecl136II GAGCTC 1 cut(s) 19
Eco130I CCWWGG 1 cut(s) 279
Eco24I GRGCYC 1 cut(s) 21
Eco47I GGWCC 2 cut(s) 49, 128
Eco53kI GAGCTC 1 cut(s) 19
EcoICRI GAGCTC 1 cut(s) 19
EcoO109I RGGNCCY 2 cut(s) 49, 128
EcoT14I CCWWGG 1 cut(s) 279
EcoT38I GRGCYC 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 279
FaeI CATG 1 cut(s) 235
FaiI YATR 4 cut(s) 97, 99, 155, 233
FalI AAGNNNNNCTT 2 cut(s) 59, 91
FaqI GGGAC 2 cut(s) 35, 200
FatI CATG 1 cut(s) 231
FriOI GRGCYC 1 cut(s) 21
HapII CCGG 1 cut(s) 27
HgaI GACGC 1 cut(s) 13
Hin1II CATG 1 cut(s) 235
HincII GTYRAC 1 cut(s) 12
HindII GTYRAC 1 cut(s) 12
HinfI GANTC 1 cut(s) 90
HpaII CCGG 1 cut(s) 27
HphI GGTGA 2 cut(s) 16, 43
Hpy166II GTNNAC 2 cut(s) 12, 229
Hpy188III TCNNGA 2 cut(s) 52, 131
Hpy8I GTNNAC 2 cut(s) 12, 229
HpyAV CCTTC 3 cut(s) 40, 119, 192
HpyCH4V TGCA 1 cut(s) 239
HpyF10VI GCNNNNNNNGC 1 cut(s) 275
HpyF3I CTNAG 1 cut(s) 190
Hsp92II CATG 1 cut(s) 235
LmnI GCTCC 1 cut(s) 16
LpnPI CCDG 2 cut(s) 40, 144
LweI GCATC 1 cut(s) 248
MaeIII GTNAC 2 cut(s) 211, 289
MboII GAAGA 2 cut(s) 46, 141
MhlI GDGCHC 1 cut(s) 21
MluCI AATT 1 cut(s) 168
MlyI GAGTC 1 cut(s) 99
MnlI CCTC 1 cut(s) 292
MseI TTAA 1 cut(s) 340
MslI CAYNNNNRTG 1 cut(s) 29
MspA1I CMGCKG 1 cut(s) 82
MspI CCGG 1 cut(s) 27
MspR9I CCNGG 1 cut(s) 28
MvnI CGCG 1 cut(s) 7
MwoI GCNNNNNNNGC 1 cut(s) 275
NciI CCSGG 1 cut(s) 28
NlaIII CATG 1 cut(s) 235
NlaIV GGNNCC 1 cut(s) 51
OliI CACNNNNGTG 1 cut(s) 29
PflFI GACNNNGTC 1 cut(s) 7
PflMI CCANNNNNTGG 1 cut(s) 321
PleI GAGTC 1 cut(s) 98
PpsI GAGTC 1 cut(s) 98
PpuMI RGGWCCY 2 cut(s) 49, 128
PshAI GACNNNNGTC 1 cut(s) 192
Psp124BI GAGCTC 1 cut(s) 21
Psp5II RGGWCCY 2 cut(s) 49, 128
PspN4I GGNNCC 1 cut(s) 51
PspPI GGNCC 2 cut(s) 49, 128
PspPPI RGGWCCY 2 cut(s) 49, 128
PsyI GACNNNGTC 1 cut(s) 7
PvuII CAGCTG 1 cut(s) 82
RseI CAYNNNNRTG 1 cut(s) 29
SacI GAGCTC 1 cut(s) 21
SaqAI TTAA 1 cut(s) 340
Sau96I GGNCC 2 cut(s) 49, 128
SchI GAGTC 1 cut(s) 99
ScrFI CCNGG 1 cut(s) 28
SduI GDGCHC 1 cut(s) 21
SetI ASST 8 cut(s) 21, 51, 72, 84, 130, 160, 196, 303
SfaNI GCATC 1 cut(s) 248
SfcI CTRYAG 1 cut(s) 153
SinI GGWCC 2 cut(s) 49, 128
SmiMI CAYNNNNRTG 1 cut(s) 29
Sse9I AATT 1 cut(s) 168
SsiI CCGC 1 cut(s) 7
SstI GAGCTC 1 cut(s) 21
StyD4I CCNGG 1 cut(s) 26
StyI CCWWGG 1 cut(s) 279
TaqI TCGA 2 cut(s) 196, 208
TasI AATT 1 cut(s) 168
Tru1I TTAA 1 cut(s) 340
Tru9I TTAA 1 cut(s) 340
TspDTI ATGAA 1 cut(s) 59
TspGWI ACGGA 1 cut(s) 29
Tth111I GACNNNGTC 1 cut(s) 7
Van91I CCANNNNNTGG 1 cut(s) 321
VpaK11BI GGWCC 2 cut(s) 49, 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.