Rh4BG178400

Jagunal, ER re-organisation during oogenesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0005333
Physical Location & Seq
Reverse (-)
31637047 .. 31647690
10644 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG178400.1

Sequence Viewer

Length: 750 bp
ATGTCGCCTCTTACGTCAGATATTCATCTCTTCATCTTTTCTATTCACAACAGAAGAGTCTCTGGGATGAAAAGCCTCACAATAGTTGGTGCATCTTTCGATAACTTTGATTCCAGGAGGATACGGACCCACAACTCTACCAAGCAAGGGCAGGACAGCGCAGCCCCAACTCCAGCGATTCCCAGCAGCAACCGTTGCTTACTCAGGAACCCAGACAAGAAGAAGAAGATGCAGCAGAGAAGATTAGCATCATCAGGGAGGCCTACTGGAACAGATGGCTCAGATTTCAACTACCGCATGGTTGTTGACTCTCGGTATCAAAAAGTAGCTGATGGAAAATCTCGTCTCTACGCGCTTATTCTCACTCAGGCTGTCTTTCAGCTGATAGGAGTCCTATATACATTTCTTTTTACTTCCAAAGGGGAAGGTCCCGATGTGATTGCTATCTCTTCTATAGCTATTGGTTCAATTTCTTTGATACTTGGGGACTTGGGTCGAAGGCGTAGTCGAGTAACTTTGTTGAAAGTTTACATGGTTGCATCATCTGTTGGAGTGCTTCTTTCCATTGCTTGTGTTGCCAAGGGGAATGTAACATTAGAGGTTTTCCAAACTCCCACTAGATGGGAAACACACAAGTTTGAACTTCTTGAGGCTGCTCGCACTGCAATTGGATTCCTGGTGCAAATAGTTACAGTGAGCACAATTACTTCTCTAATCAGTAACATGTCTCCACCGAAAAGAACCTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jagunal

Protein Analysis

249

Amino Acids

27.35

Weight (kDa)

10.48

Isoelectric Point (pI)

51.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jagunal PF07086 87 - 129 2.9e-06 Jagunal, ER re-organisation during oogenesis
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 621
AccII CGCG 1 cut(s) 353
AciI CCGC 1 cut(s) 295
AfiI CCNNNNNNNGG 2 cut(s) 147, 621
AflIII ACRYGT 1 cut(s) 723
AgsI TTSAA 4 cut(s) 289, 468, 523, 641
AjnI CCWGG 2 cut(s) 113, 675
AluBI AGCT 3 cut(s) 329, 382, 458
AluI AGCT 3 cut(s) 329, 382, 458
Alw21I GWGCWC 1 cut(s) 701
Alw26I GTCTC 3 cut(s) 64, 350, 732
AoxI GGCC 1 cut(s) 260
ApeKI GCWGC 4 cut(s) 161, 186, 232, 653
ArsI GACNNNNNNTTYG 2 cut(s) 490, 522
AspLEI GCGC 2 cut(s) 161, 355
AspS9I GGNCC 2 cut(s) 126, 428
AvaII GGWCC 2 cut(s) 126, 428
Bbv12I GWGCWC 1 cut(s) 701
BbvI GCAGC 4 cut(s) 173, 198, 244, 640
BccI CCATC 3 cut(s) 269, 326, 615
BcgI CGANNNNNNTGC 2 cut(s) 422, 456
BciT130I CCWGG 2 cut(s) 115, 677
BciVI GTATCC 1 cut(s) 114
BcoDI GTCTC 3 cut(s) 64, 350, 732
BfaI CTAG 1 cut(s) 618
BfmI CTRYAG 1 cut(s) 453
BfuI GTATCC 1 cut(s) 114
BisI GCNGC 4 cut(s) 162, 187, 233, 654
BlsI GCNGC 4 cut(s) 163, 188, 234, 655
Bme1390I CCNGG 2 cut(s) 115, 677
Bme18I GGWCC 2 cut(s) 126, 428
BmgT120I GGNCC 2 cut(s) 126, 428
BmiI GGNNCC 3 cut(s) 128, 209, 430
BmrFI CCNGG 2 cut(s) 115, 677
BmsI GCATC 4 cut(s) 101, 219, 257, 548
BoxI GACNNNNGTC 1 cut(s) 492
BpmI CTGGAG 1 cut(s) 156
BpuEI CTTGAG 1 cut(s) 668
BsaBI GATNNNNATC 3 cut(s) 24, 247, 443
BsaJI CCNNGG 1 cut(s) 579
Bsc4I CCNNNNNNNGG 2 cut(s) 147, 621
Bse1I ACTGG 1 cut(s) 271
Bse3DI GCAATG 1 cut(s) 564
Bse8I GATNNNNATC 3 cut(s) 24, 247, 443
BseBI CCWGG 2 cut(s) 115, 677
BseDI CCNNGG 1 cut(s) 579
BseGI GGATG 1 cut(s) 72
BseJI GATNNNNATC 3 cut(s) 24, 247, 443
BseLI CCNNNNNNNGG 2 cut(s) 147, 621
BseMI GCAATG 1 cut(s) 564
BseMII CTCAG 3 cut(s) 217, 294, 380
BseNI ACTGG 1 cut(s) 271
BseXI GCAGC 4 cut(s) 173, 198, 244, 640
BseYI CCCAGC 1 cut(s) 182
Bsh1236I CGCG 1 cut(s) 353
BshFI GGCC 1 cut(s) 262
BsiHKAI GWGCWC 1 cut(s) 701
BslFI GGGAC 2 cut(s) 414, 500
BslI CCNNNNNNNGG 2 cut(s) 147, 621
BsmAI GTCTC 3 cut(s) 64, 350, 732
BsmBI CGTCTC 1 cut(s) 350
BsmFI GGGAC 2 cut(s) 414, 500
BsnI GGCC 1 cut(s) 262
Bsp1286I GDGCHC 1 cut(s) 701
BspACI CCGC 1 cut(s) 295
BspANI GGCC 1 cut(s) 262
BspCNI CTCAG 3 cut(s) 216, 293, 379
BspFNI CGCG 1 cut(s) 353
BspLI GGNNCC 3 cut(s) 128, 209, 430
BsrDI GCAATG 1 cut(s) 564
BsrI ACTGG 1 cut(s) 271
BssECI CCNNGG 1 cut(s) 579
BssT1I CCWWGG 1 cut(s) 579
Bst2UI CCWGG 2 cut(s) 115, 677
Bst4CI ACNGT 2 cut(s) 194, 694
Bst6I CTCTTC 3 cut(s) 35, 49, 454
BstAPI GCANNNNNTGC 1 cut(s) 195
BstC8I GCNNGC 1 cut(s) 658
BstDEI CTNAG 4 cut(s) 203, 280, 366, 747
BstF5I GGATG 1 cut(s) 72
BstFNI CGCG 1 cut(s) 353
BstHHI GCGC 2 cut(s) 161, 355
BstMAI GTCTC 3 cut(s) 64, 350, 732
BstMWI GCNNNNNNNGC 3 cut(s) 195, 575, 662
BstNI CCWGG 2 cut(s) 115, 677
BstNSI RCATGY 1 cut(s) 727
BstPAI GACNNNNGTC 1 cut(s) 492
BstSCI CCNGG 2 cut(s) 113, 675
BstSFI CTRYAG 1 cut(s) 453
BstUI CGCG 1 cut(s) 353
BstV1I GCAGC 4 cut(s) 173, 198, 244, 640
BsuI GTATCC 1 cut(s) 114
BsuRI GGCC 1 cut(s) 262
BtsCI GGATG 1 cut(s) 72
BtsI GCAGTG 1 cut(s) 660
BtsIMutI CAGTG 2 cut(s) 660, 699
Cac8I GCNNGC 1 cut(s) 658
CfoI GCGC 2 cut(s) 161, 355
Cfr13I GGNCC 2 cut(s) 126, 428
CviAII CATG 3 cut(s) 298, 532, 724
CviJI RGCY 9 cut(s) 75, 164, 262, 279, 329, 371, 382, 458, 653
CviKI_1 RGCY 9 cut(s) 75, 164, 262, 279, 329, 371, 382, 458, 653
DdeI CTNAG 4 cut(s) 203, 280, 366, 747
Eam1104I CTCTTC 3 cut(s) 35, 49, 454
EarI CTCTTC 3 cut(s) 35, 49, 454
Eco130I CCWWGG 1 cut(s) 579
Eco147I AGGCCT 1 cut(s) 262
Eco47I GGWCC 2 cut(s) 126, 428
EcoO109I RGGNCCY 1 cut(s) 428
EcoRII CCWGG 2 cut(s) 113, 675
EcoT14I CCWWGG 1 cut(s) 579
ErhI CCWWGG 1 cut(s) 579
Esp3I CGTCTC 1 cut(s) 350
FaeI CATG 3 cut(s) 301, 535, 727
FaiI YATR 6 cut(s) 299, 397, 399, 455, 533, 725
FalI AAGNNNNNCTT 1 cut(s) 730
FaqI GGGAC 2 cut(s) 414, 500
FatI CATG 3 cut(s) 297, 531, 723
Fnu4HI GCNGC 4 cut(s) 162, 187, 233, 654
FokI GGATG 1 cut(s) 79
Fsp4HI GCNGC 4 cut(s) 162, 187, 233, 654
FspBI CTAG 1 cut(s) 618
GlaI GCGC 2 cut(s) 160, 354
GluI GCNGC 4 cut(s) 162, 187, 233, 654
GsaI CCCAGC 1 cut(s) 186
GsuI CTGGAG 1 cut(s) 156
HaeIII GGCC 1 cut(s) 262
HhaI GCGC 2 cut(s) 161, 355
Hin1II CATG 3 cut(s) 301, 535, 727
Hin6I GCGC 2 cut(s) 159, 353
HinP1I GCGC 2 cut(s) 159, 353
HincII GTYRAC 1 cut(s) 307
HindII GTYRAC 1 cut(s) 307
HinfI GANTC 6 cut(s) 57, 110, 178, 308, 390, 672
Hpy166II GTNNAC 2 cut(s) 307, 529
Hpy188I TCNGA 2 cut(s) 19, 283
Hpy188III TCNNGA 3 cut(s) 205, 431, 647
Hpy8I GTNNAC 2 cut(s) 307, 529
HpyAV CCTTC 2 cut(s) 419, 492
HpyCH4III ACNGT 2 cut(s) 194, 694
HpyCH4IV ACGT 1 cut(s) 14
HpyCH4V TGCA 5 cut(s) 92, 232, 539, 665, 682
HpyF10VI GCNNNNNNNGC 3 cut(s) 195, 575, 662
HpyF3I CTNAG 4 cut(s) 203, 280, 366, 747
HpySE526I ACGT 1 cut(s) 14
Hsp92II CATG 3 cut(s) 301, 535, 727
HspAI GCGC 2 cut(s) 159, 353
Lsp1109I GCAGC 4 cut(s) 173, 198, 244, 640
LweI GCATC 4 cut(s) 101, 219, 257, 548
MaeI CTAG 1 cut(s) 618
MaeII ACGT 1 cut(s) 14
MaeIII GTNAC 4 cut(s) 511, 589, 688, 719
MboII GAAGA 7 cut(s) 22, 66, 232, 235, 238, 252, 441
MfeI CAATTG 1 cut(s) 666
MhlI GDGCHC 1 cut(s) 701
MluCI AATT 3 cut(s) 468, 666, 702
MlyI GAGTC 3 cut(s) 66, 302, 399
MmeI TCCRAC 1 cut(s) 529
MnlI CCTC 6 cut(s) 18, 86, 111, 252, 592, 643
MspA1I CMGCKG 1 cut(s) 382
MspR9I CCNGG 2 cut(s) 115, 677
MunI CAATTG 1 cut(s) 666
MvaI CCWGG 2 cut(s) 115, 677
MvnI CGCG 1 cut(s) 353
MwoI GCNNNNNNNGC 3 cut(s) 195, 575, 662
NlaIII CATG 3 cut(s) 301, 535, 727
NlaIV GGNNCC 3 cut(s) 128, 209, 430
NspI RCATGY 1 cut(s) 727
PceI AGGCCT 1 cut(s) 262
PciI ACATGT 1 cut(s) 723
PcsI WCGNNNNNNNCGW 1 cut(s) 11
PfeI GAWTC 3 cut(s) 110, 178, 672
PflMI CCANNNNNTGG 1 cut(s) 621
PfoI TCCNGGA 1 cut(s) 113
PkrI GCNGC 4 cut(s) 163, 188, 234, 655
PleI GAGTC 3 cut(s) 65, 302, 398
PpsI GAGTC 3 cut(s) 65, 302, 398
PpuMI RGGWCCY 1 cut(s) 428
PscI ACATGT 1 cut(s) 723
PshAI GACNNNNGTC 1 cut(s) 492
Psp5II RGGWCCY 1 cut(s) 428
Psp6I CCWGG 2 cut(s) 113, 675
PspFI CCCAGC 1 cut(s) 182
PspGI CCWGG 2 cut(s) 113, 675
PspN4I GGNNCC 3 cut(s) 128, 209, 430
PspPI GGNCC 2 cut(s) 126, 428
PspPPI RGGWCCY 1 cut(s) 428
PvuII CAGCTG 1 cut(s) 382
SatI GCNGC 4 cut(s) 162, 187, 233, 654
Sau96I GGNCC 2 cut(s) 126, 428
SchI GAGTC 3 cut(s) 66, 302, 399
ScrFI CCNGG 2 cut(s) 115, 677
SduI GDGCHC 1 cut(s) 701
SetI ASST 7 cut(s) 17, 331, 384, 430, 460, 603, 746
SfaNI GCATC 4 cut(s) 101, 219, 257, 548
SfcI CTRYAG 1 cut(s) 453
SinI GGWCC 2 cut(s) 126, 428
SmlI CTYRAG 1 cut(s) 647
SmoI CTYRAG 1 cut(s) 647
Sse9I AATT 3 cut(s) 468, 666, 702
SseBI AGGCCT 1 cut(s) 262
SsiI CCGC 1 cut(s) 295
SspMI CTAG 1 cut(s) 618
StuI AGGCCT 1 cut(s) 262
StyD4I CCNGG 2 cut(s) 113, 675
StyI CCWWGG 1 cut(s) 579
TaaI ACNGT 2 cut(s) 194, 694
TaiI ACGT 1 cut(s) 17
TaqI TCGA 3 cut(s) 99, 496, 508
TasI AATT 3 cut(s) 468, 666, 702
TfiI GAWTC 3 cut(s) 110, 178, 672
TscAI CASTG 2 cut(s) 667, 699
TseI GCWGC 4 cut(s) 161, 186, 232, 653
TspDTI ATGAA 3 cut(s) 14, 22, 83
TspGWI ACGGA 1 cut(s) 139
TspRI CASTG 2 cut(s) 667, 699
Van91I CCANNNNNTGG 1 cut(s) 621
VpaK11BI GGWCC 2 cut(s) 126, 428
XceI RCATGY 1 cut(s) 727
XspI CTAG 1 cut(s) 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.