FvH4_4g13180

Jagunal, ER re-organisation during oogenesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0005333
Physical Location & Seq
Reverse (-)
16788677 .. 16792931
4255 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g13180.t2

Sequence Viewer

Length: 516 bp
ATGCAGCAGAGAAGATCAGCAGGGAGGCCTACTGGTACAGATGGCTCAGATTTCAACTACCGCATGGTTGTTGACTCTCGGTATCAAAAAGTAGCTGATGGGAAATCTCGTCTCTACGCTCATATTCTCACTCAGGCTGTCTTGCAGCTGATAGGAATCCTATATACATGTCTTTCCACTTCCAAAGGGGAAGTTCCCAATGTGATTGCTATCAGTTCTATAGCTATCAGTTTAATTTCATTGATACTTGGGGACTTAGGTCGAAGGCGTAGTCAAGCGACTTTGTTGAAAGTTTACATGGTTGCATCATCCATTGGAGTGGTTCTTTCCATTGCTTGTGTCGCTAAGGGGAATGTGTCATTACAGGTTCTCCAAACTCCCAGTAGATGGGAAATACACAAGTTTGAACTTCTTGAGGCAGCTCGCACTGCAGTTGGATTCCTGGTACAAATATTTACAGTCAGCACAATTACTTCTTTAATCAGTAACATGTCTCCACCGAAAAGAACCTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jagunal

Protein Analysis

172

Amino Acids

18.6

Weight (kDa)

10.14

Isoelectric Point (pI)

59.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jagunal PF07086 5 - 130 2.2e-08 Jagunal, ER re-organisation during oogenesis
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 387
AciI CCGC 1 cut(s) 61
AfaI GTAC 2 cut(s) 37, 447
AfiI CCNNNNNNNGG 1 cut(s) 387
AflIII ACRYGT 2 cut(s) 167, 489
AgsI TTSAA 3 cut(s) 55, 289, 407
AjnI CCWGG 1 cut(s) 441
AluBI AGCT 4 cut(s) 95, 148, 224, 422
AluI AGCT 4 cut(s) 95, 148, 224, 422
Alw26I GTCTC 2 cut(s) 116, 498
AoxI GGCC 1 cut(s) 26
ApeKI GCWGC 3 cut(s) 4, 145, 419
ArsI GACNNNNNNTTYG 2 cut(s) 256, 288
BbvI GCAGC 3 cut(s) 16, 157, 431
BccI CCATC 3 cut(s) 35, 92, 381
BciT130I CCWGG 1 cut(s) 443
BcoDI GTCTC 2 cut(s) 116, 498
BfmI CTRYAG 2 cut(s) 219, 429
BisI GCNGC 3 cut(s) 5, 146, 420
BlsI GCNGC 3 cut(s) 6, 147, 421
Bme1390I CCNGG 1 cut(s) 443
BmrFI CCNGG 1 cut(s) 443
BmrI ACTGGG 1 cut(s) 375
BmsI GCATC 1 cut(s) 314
BmuI ACTGGG 1 cut(s) 375
BoxI GACNNNNGTC 1 cut(s) 258
Bpu10I CCTNAGC 1 cut(s) 345
BpuEI CTTGAG 1 cut(s) 434
BsaBI GATNNNNATC 2 cut(s) 155, 209
BsaXI ACNNNNNCTCC 2 cut(s) 354, 384
Bsc4I CCNNNNNNNGG 1 cut(s) 387
Bse1I ACTGG 2 cut(s) 37, 381
Bse3DI GCAATG 1 cut(s) 330
Bse8I GATNNNNATC 2 cut(s) 155, 209
BseBI CCWGG 1 cut(s) 443
BseGI GGATG 1 cut(s) 308
BseJI GATNNNNATC 2 cut(s) 155, 209
BseLI CCNNNNNNNGG 1 cut(s) 387
BseMI GCAATG 1 cut(s) 330
BseMII CTCAG 2 cut(s) 60, 146
BseNI ACTGG 2 cut(s) 37, 381
BseXI GCAGC 3 cut(s) 16, 157, 431
BshFI GGCC 1 cut(s) 28
BslFI GGGAC 1 cut(s) 266
BslI CCNNNNNNNGG 1 cut(s) 387
BsmAI GTCTC 2 cut(s) 116, 498
BsmBI CGTCTC 1 cut(s) 116
BsmFI GGGAC 1 cut(s) 266
BsnI GGCC 1 cut(s) 28
Bsp143I GATC 1 cut(s) 14
BspACI CCGC 1 cut(s) 61
BspANI GGCC 1 cut(s) 28
BspCNI CTCAG 2 cut(s) 59, 145
BspMAI CTGCAG 1 cut(s) 433
BsrDI GCAATG 1 cut(s) 330
BsrI ACTGG 2 cut(s) 37, 381
BssMI GATC 1 cut(s) 14
Bst2UI CCWGG 1 cut(s) 443
Bst4CI ACNGT 1 cut(s) 460
BstC8I GCNNGC 1 cut(s) 424
BstDEI CTNAG 5 cut(s) 46, 132, 256, 345, 513
BstF5I GGATG 1 cut(s) 308
BstKTI GATC 1 cut(s) 17
BstMAI GTCTC 2 cut(s) 116, 498
BstMBI GATC 1 cut(s) 14
BstMWI GCNNNNNNNGC 2 cut(s) 341, 428
BstNI CCWGG 1 cut(s) 443
BstNSI RCATGY 2 cut(s) 171, 493
BstPAI GACNNNNGTC 1 cut(s) 258
BstSCI CCNGG 1 cut(s) 441
BstSFI CTRYAG 2 cut(s) 219, 429
BstV1I GCAGC 3 cut(s) 16, 157, 431
BstXI CCANNNNNNTGG 1 cut(s) 319
BsuRI GGCC 1 cut(s) 28
BtsCI GGATG 1 cut(s) 308
BtsI GCAGTG 1 cut(s) 426
BtsIMutI CAGTG 1 cut(s) 426
Cac8I GCNNGC 1 cut(s) 424
Csp6I GTAC 2 cut(s) 36, 446
CviAII CATG 4 cut(s) 64, 168, 298, 490
CviJI RGCY 7 cut(s) 28, 45, 95, 137, 148, 224, 422
CviKI_1 RGCY 7 cut(s) 28, 45, 95, 137, 148, 224, 422
CviQI GTAC 2 cut(s) 36, 446
DdeI CTNAG 5 cut(s) 46, 132, 256, 345, 513
DpnI GATC 1 cut(s) 16
DpnII GATC 1 cut(s) 14
Eco147I AGGCCT 1 cut(s) 28
EcoRII CCWGG 1 cut(s) 441
Esp3I CGTCTC 1 cut(s) 116
FaeI CATG 4 cut(s) 67, 171, 301, 493
FaiI YATR 8 cut(s) 65, 123, 163, 165, 169, 221, 299, 491
FalI AAGNNNNNCTT 1 cut(s) 496
FaqI GGGAC 1 cut(s) 266
FatI CATG 4 cut(s) 63, 167, 297, 489
Fnu4HI GCNGC 3 cut(s) 5, 146, 420
FokI GGATG 1 cut(s) 295
Fsp4HI GCNGC 3 cut(s) 5, 146, 420
GluI GCNGC 3 cut(s) 5, 146, 420
HaeIII GGCC 1 cut(s) 28
Hin1II CATG 4 cut(s) 67, 171, 301, 493
HincII GTYRAC 1 cut(s) 73
HindII GTYRAC 1 cut(s) 73
HinfI GANTC 3 cut(s) 74, 156, 438
Hpy166II GTNNAC 2 cut(s) 73, 295
Hpy188I TCNGA 1 cut(s) 49
Hpy188III TCNNGA 1 cut(s) 413
Hpy8I GTNNAC 2 cut(s) 73, 295
HpyAV CCTTC 1 cut(s) 258
HpyCH4III ACNGT 1 cut(s) 460
HpyCH4V TGCA 4 cut(s) 4, 145, 305, 431
HpyF10VI GCNNNNNNNGC 2 cut(s) 341, 428
HpyF3I CTNAG 5 cut(s) 46, 132, 256, 345, 513
Hsp92II CATG 4 cut(s) 67, 171, 301, 493
Kzo9I GATC 1 cut(s) 14
LpnPI CCDG 7 cut(s) 6, 18, 119, 350, 394, 428, 455
Lsp1109I GCAGC 3 cut(s) 16, 157, 431
LweI GCATC 1 cut(s) 314
MaeIII GTNAC 1 cut(s) 485
MalI GATC 1 cut(s) 16
MboI GATC 1 cut(s) 14
MboII GAAGA 1 cut(s) 24
MluCI AATT 2 cut(s) 234, 468
MlyI GAGTC 1 cut(s) 68
MmeI TCCRAC 1 cut(s) 415
MnlI CCTC 2 cut(s) 18, 409
MseI TTAA 2 cut(s) 233, 479
MslI CAYNNNNRTG 1 cut(s) 317
MspA1I CMGCKG 1 cut(s) 148
MspR9I CCNGG 1 cut(s) 443
MvaI CCWGG 1 cut(s) 443
MwoI GCNNNNNNNGC 2 cut(s) 341, 428
NdeII GATC 1 cut(s) 14
NlaIII CATG 4 cut(s) 67, 171, 301, 493
NspI RCATGY 2 cut(s) 171, 493
PceI AGGCCT 1 cut(s) 28
PciI ACATGT 2 cut(s) 167, 489
PfeI GAWTC 2 cut(s) 156, 438
PflMI CCANNNNNTGG 1 cut(s) 387
PkrI GCNGC 3 cut(s) 6, 147, 421
PleI GAGTC 1 cut(s) 68
PpsI GAGTC 1 cut(s) 68
PscI ACATGT 2 cut(s) 167, 489
PshAI GACNNNNGTC 1 cut(s) 258
Psp6I CCWGG 1 cut(s) 441
PspGI CCWGG 1 cut(s) 441
PstI CTGCAG 1 cut(s) 433
PvuII CAGCTG 1 cut(s) 148
RsaI GTAC 2 cut(s) 37, 447
RsaNI GTAC 2 cut(s) 36, 446
RseI CAYNNNNRTG 1 cut(s) 317
SaqAI TTAA 2 cut(s) 233, 479
SatI GCNGC 3 cut(s) 5, 146, 420
Sau3AI GATC 1 cut(s) 14
SchI GAGTC 1 cut(s) 68
ScrFI CCNGG 1 cut(s) 443
SetI ASST 7 cut(s) 97, 150, 226, 262, 369, 424, 512
SfaNI GCATC 1 cut(s) 314
SfcI CTRYAG 2 cut(s) 219, 429
SmiMI CAYNNNNRTG 1 cut(s) 317
SmlI CTYRAG 1 cut(s) 413
SmoI CTYRAG 1 cut(s) 413
Sse9I AATT 2 cut(s) 234, 468
SseBI AGGCCT 1 cut(s) 28
SsiI CCGC 1 cut(s) 61
SspI AATATT 1 cut(s) 453
StuI AGGCCT 1 cut(s) 28
StyD4I CCNGG 1 cut(s) 441
TaaI ACNGT 1 cut(s) 460
TaqI TCGA 1 cut(s) 262
TasI AATT 2 cut(s) 234, 468
TfiI GAWTC 2 cut(s) 156, 438
Tru1I TTAA 2 cut(s) 233, 479
Tru9I TTAA 2 cut(s) 233, 479
TscAI CASTG 1 cut(s) 433
TseI GCWGC 3 cut(s) 4, 145, 419
TspDTI ATGAA 1 cut(s) 228
TspRI CASTG 1 cut(s) 433
Van91I CCANNNNNTGG 1 cut(s) 387
XceI RCATGY 2 cut(s) 171, 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.