Jagunal, ER re-organisation during oogenesis
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G51510 |
| fragaria_vesca | FvH4_4g13180 FvH4_4g13180 FvH4_4g13180 |
| malus_domestica | MD07G1255100.v1.1 |
| prunus_persica | Prupe.2G278900_v2.0.a1 Prupe.2G279400_v2.0.a1 |
| pyrus_communis | pycom01g19500 pycom07g22830 |
| rosa_chinensis | RchiOBHm_Chr4g0409771 RchiOBHm_Chr4g0413311 |
| rosa_laevigata | RLG00000008225 |
| rosa_multiflora | Rmu_sc0009573.1_g000005 Rmu_sc0009860.1_g000004 |
| rosa_roxburghii | Rroxscaffold_5G00357240 |
| rosa_rugosa | Rorug04G0119500 Rorug04G0119600 Rorug04G0119700 Rorug04G0119800 Rorug04G0119900 |
| rosa_samantha | Rh2BG188800 Rh4AG179300 Rh4BG178400 Rh4CG189900 Rh4DG174400 Rh5AG393900 Rh6DG341500 Rh7BG185600 |
| rosa_wichuraiana | Rw4G014900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 303 |
| AciI | CCGC | 2 cut(s) | 14, 145 |
| AcuI | CTGAAG | 1 cut(s) | 23 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 124 |
| AgsI | TTSAA | 1 cut(s) | 294 |
| AhlI | ACTAGT | 1 cut(s) | 212 |
| AoxI | GGCC | 1 cut(s) | 387 |
| AspS9I | GGNCC | 1 cut(s) | 387 |
| AsuHPI | GGTGA | 1 cut(s) | 322 |
| BccI | CCATC | 3 cut(s) | 44, 118, 267 |
| BcuI | ACTAGT | 1 cut(s) | 212 |
| BfaI | CTAG | 1 cut(s) | 213 |
| BmgT120I | GGNCC | 1 cut(s) | 387 |
| BmiI | GGNNCC | 2 cut(s) | 87, 388 |
| BmsI | GCATC | 1 cut(s) | 371 |
| BpmI | CTGGAG | 1 cut(s) | 218 |
| BsaJI | CCNNGG | 1 cut(s) | 80 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 191, 221 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 124 |
| Bse1I | ACTGG | 1 cut(s) | 408 |
| BseDI | CCNNGG | 1 cut(s) | 80 |
| BseGI | GGATG | 1 cut(s) | 362 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 124 |
| BseMII | CTCAG | 2 cut(s) | 23, 126 |
| BseNI | ACTGG | 1 cut(s) | 408 |
| BseRI | GAGGAG | 1 cut(s) | 215 |
| BshFI | GGCC | 1 cut(s) | 389 |
| BslFI | GGGAC | 1 cut(s) | 145 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 124 |
| BsmFI | GGGAC | 1 cut(s) | 145 |
| BsmI | GAATGC | 1 cut(s) | 252 |
| BsnI | GGCC | 1 cut(s) | 389 |
| Bsp143I | GATC | 1 cut(s) | 91 |
| BspACI | CCGC | 2 cut(s) | 14, 145 |
| BspANI | GGCC | 1 cut(s) | 389 |
| BspCNI | CTCAG | 2 cut(s) | 24, 127 |
| BspLI | GGNNCC | 2 cut(s) | 87, 388 |
| BsrI | ACTGG | 1 cut(s) | 408 |
| BssECI | CCNNGG | 1 cut(s) | 80 |
| BssMI | GATC | 1 cut(s) | 91 |
| BssNAI | GTATAC | 1 cut(s) | 304 |
| BssT1I | CCWWGG | 1 cut(s) | 80 |
| Bst1107I | GTATAC | 1 cut(s) | 304 |
| BstC8I | GCNNGC | 1 cut(s) | 421 |
| BstDEI | CTNAG | 2 cut(s) | 32, 135 |
| BstF5I | GGATG | 1 cut(s) | 362 |
| BstKTI | GATC | 1 cut(s) | 94 |
| BstMBI | GATC | 1 cut(s) | 91 |
| BstNSI | RCATGY | 1 cut(s) | 423 |
| BstZ17I | GTATAC | 1 cut(s) | 304 |
| BsuRI | GGCC | 1 cut(s) | 389 |
| BtsCI | GGATG | 1 cut(s) | 362 |
| Cac8I | GCNNGC | 1 cut(s) | 421 |
| Cfr13I | GGNCC | 1 cut(s) | 387 |
| CviAII | CATG | 2 cut(s) | 326, 420 |
| CviJI | RGCY | 6 cut(s) | 37, 184, 236, 263, 321, 389 |
| CviKI_1 | RGCY | 6 cut(s) | 37, 184, 236, 263, 321, 389 |
| DdeI | CTNAG | 2 cut(s) | 32, 135 |
| DpnI | GATC | 1 cut(s) | 93 |
| DpnII | GATC | 1 cut(s) | 91 |
| Eco130I | CCWWGG | 1 cut(s) | 80 |
| Eco57I | CTGAAG | 1 cut(s) | 23 |
| EcoO109I | RGGNCCY | 1 cut(s) | 387 |
| EcoT14I | CCWWGG | 1 cut(s) | 80 |
| ErhI | CCWWGG | 1 cut(s) | 80 |
| FaeI | CATG | 2 cut(s) | 329, 423 |
| FaiI | YATR | 6 cut(s) | 70, 181, 304, 327, 401, 421 |
| FaqI | GGGAC | 1 cut(s) | 145 |
| FatI | CATG | 2 cut(s) | 325, 419 |
| FauI | CCCGC | 1 cut(s) | 138 |
| FblI | GTMKAC | 1 cut(s) | 303 |
| FokI | GGATG | 1 cut(s) | 349 |
| FspBI | CTAG | 1 cut(s) | 213 |
| GsuI | CTGGAG | 1 cut(s) | 218 |
| HaeIII | GGCC | 1 cut(s) | 389 |
| Hin1II | CATG | 2 cut(s) | 329, 423 |
| HinfI | GANTC | 1 cut(s) | 290 |
| HphI | GGTGA | 1 cut(s) | 322 |
| Hpy166II | GTNNAC | 2 cut(s) | 210, 304 |
| Hpy188I | TCNGA | 1 cut(s) | 33 |
| Hpy188III | TCNNGA | 2 cut(s) | 89, 197 |
| Hpy8I | GTNNAC | 2 cut(s) | 210, 304 |
| HpyAV | CCTTC | 1 cut(s) | 122 |
| HpyCH4V | TGCA | 2 cut(s) | 152, 362 |
| HpyF3I | CTNAG | 2 cut(s) | 32, 135 |
| Hsp92II | CATG | 2 cut(s) | 329, 423 |
| Kzo9I | GATC | 1 cut(s) | 91 |
| LpnPI | CCDG | 7 cut(s) | 26, 102, 132, 182, 368, 389, 401 |
| LweI | GCATC | 1 cut(s) | 371 |
| MaeI | CTAG | 1 cut(s) | 213 |
| MaeIII | GTNAC | 2 cut(s) | 18, 335 |
| MalI | GATC | 1 cut(s) | 93 |
| MboI | GATC | 1 cut(s) | 91 |
| MboII | GAAGA | 1 cut(s) | 358 |
| MmeI | TCCRAC | 1 cut(s) | 205 |
| MnlI | CCTC | 7 cut(s) | 27, 193, 214, 247, 251, 376, 388 |
| MseI | TTAA | 2 cut(s) | 248, 442 |
| MslI | CAYNNNNRTG | 1 cut(s) | 424 |
| Mva1269I | GAATGC | 1 cut(s) | 252 |
| NdeII | GATC | 1 cut(s) | 91 |
| NlaIII | CATG | 2 cut(s) | 329, 423 |
| NlaIV | GGNNCC | 2 cut(s) | 87, 388 |
| NspI | RCATGY | 1 cut(s) | 423 |
| PaeI | GCATGC | 1 cut(s) | 423 |
| PctI | GAATGC | 1 cut(s) | 252 |
| PfeI | GAWTC | 1 cut(s) | 290 |
| PspN4I | GGNNCC | 2 cut(s) | 87, 388 |
| PspPI | GGNCC | 1 cut(s) | 387 |
| RseI | CAYNNNNRTG | 1 cut(s) | 424 |
| SaqAI | TTAA | 2 cut(s) | 248, 442 |
| Sau3AI | GATC | 1 cut(s) | 91 |
| Sau96I | GGNCC | 1 cut(s) | 387 |
| SetI | ASST | 5 cut(s) | 31, 45, 112, 225, 312 |
| SfaNI | GCATC | 1 cut(s) | 371 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 424 |
| SpeI | ACTAGT | 1 cut(s) | 212 |
| SphI | GCATGC | 1 cut(s) | 423 |
| SsiI | CCGC | 2 cut(s) | 14, 145 |
| SspMI | CTAG | 1 cut(s) | 213 |
| StyI | CCWWGG | 1 cut(s) | 80 |
| TaqI | TCGA | 2 cut(s) | 106, 256 |
| TfiI | GAWTC | 1 cut(s) | 290 |
| Tru1I | TTAA | 2 cut(s) | 248, 442 |
| Tru9I | TTAA | 2 cut(s) | 248, 442 |
| XceI | RCATGY | 1 cut(s) | 423 |
| XmiI | GTMKAC | 1 cut(s) | 303 |
| XspI | CTAG | 1 cut(s) | 213 |