Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0005333

Physical Location & Seq

Genomic Coordinates Forward (+)

18131884 .. 18133722

Gene Structure 1839 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g19500.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGCAGCAAAGAAGACCGGCATCAGGGAGGCCTACTGGAACGGACGGCTCAGAGTTCAACTATCGCATGGTTGTTGACTCTCGGTATCAGAAGCTAGCTAAAGGGAAATCTCGTCTCTACGCTCTTATTCTCACTCAGGCCATCCTTCAATTGGTAGGAGTCCTACACACTTTTCTATTGACATCAGATGAGGACGGTCCAGATGTGATTGCTGTCTCATCTGTTGCTATTGGTTCTGTTTCTTTGATAATCGGGGAGTTGGGTCGAAAGCGCAGCCGAGTGTCTTTGTTGAAAGTGTACATGGTTGCATCATCTGTTGGAATACTTCTCTCCATTGCTTGTGTTCTGCTTCCTAAAGCTACAATCATTCCAGTGATCTACAAGAATTTTTATTGTTCGTTTCTTTCAGGGTTCAAATTTTGTAATTCGAGGAAATTATGTAGAAACAAAAACAGTGATCGTAGGGAATGTTATTTGATCCATCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Jagunal

Protein Analysis

163

Amino Acids

18.02

Weight (kDa)

9.89

Isoelectric Point (pI)

46.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51510
fragaria_vesca	FvH4_4g13180 FvH4_4g13180 FvH4_4g13180
malus_domestica	MD07G1255100.v1.1
prunus_persica	Prupe.2G278900_v2.0.a1 Prupe.2G279400_v2.0.a1
pyrus_communis	pycom01g19500 pycom07g22830
rosa_chinensis	RchiOBHm_Chr4g0409771 RchiOBHm_Chr4g0413311
rosa_laevigata	RLG00000008225
rosa_multiflora	Rmu_sc0009573.1_g000005 Rmu_sc0009860.1_g000004
rosa_roxburghii	Rroxscaffold_5G00357240
rosa_rugosa	Rorug04G0119500 Rorug04G0119600 Rorug04G0119700 Rorug04G0119800 Rorug04G0119900
rosa_samantha	Rh2BG188800 Rh4AG179300 Rh4BG178400 Rh4CG189900 Rh4DG174400 Rh5AG393900 Rh6DG341500 Rh7BG185600
rosa_wichuraiana	Rw4G014900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	472
AcsI	RAATTY	2 cut(s)	385, 416
AfaI	GTAC	1 cut(s)	299
AfiI	CCNNNNNNNGG	2 cut(s)	23, 151
AgsI	TTSAA	4 cut(s)	58, 149, 292, 415
AluBI	AGCT	3 cut(s)	94, 98, 359
AluI	AGCT	3 cut(s)	94, 98, 359
Alw26I	GTCTC	2 cut(s)	119, 220
AlwI	GGATC	1 cut(s)	472
AoxI	GGCC	2 cut(s)	29, 138
ApeKI	GCWGC	2 cut(s)	4, 273
ApoI	RAATTY	2 cut(s)	385, 416
AspLEI	GCGC	1 cut(s)	273
AspS9I	GGNCC	1 cut(s)	197
AsuNHI	GCTAGC	1 cut(s)	94
AvaII	GGWCC	1 cut(s)	197
BbsI	GAAGAC	1 cut(s)	19
BbvI	GCAGC	2 cut(s)	16, 285
BccI	CCATC	1 cut(s)	149
BceAI	ACGGC	1 cut(s)	61
BcoDI	GTCTC	2 cut(s)	119, 220
BfaI	CTAG	1 cut(s)	95
BisI	GCNGC	2 cut(s)	5, 274
BlsI	GCNGC	2 cut(s)	6, 275
Bme18I	GGWCC	1 cut(s)	197
BmgT120I	GGNCC	1 cut(s)	197
BmsI	GCATC	2 cut(s)	29, 317
BmtI	GCTAGC	1 cut(s)	98
BpiI	GAAGAC	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	2 cut(s)	23, 151
Bse118I	RCCGGY	1 cut(s)	16
Bse1I	ACTGG	2 cut(s)	40, 371
Bse3DI	GCAATG	1 cut(s)	333
BseGI	GGATG	1 cut(s)	141
BseLI	CCNNNNNNNGG	2 cut(s)	23, 151
BseMI	GCAATG	1 cut(s)	333
BseMII	CTCAG	2 cut(s)	63, 149
BseNI	ACTGG	2 cut(s)	40, 371
BseXI	GCAGC	2 cut(s)	16, 285
BshFI	GGCC	2 cut(s)	31, 140
BsiSI	CCGG	1 cut(s)	17
BslI	CCNNNNNNNGG	2 cut(s)	23, 151
BsmAI	GTCTC	2 cut(s)	119, 220
BsmBI	CGTCTC	1 cut(s)	119
BsnI	GGCC	2 cut(s)	31, 140
Bsp1407I	TGTACA	1 cut(s)	297
Bsp143I	GATC	3 cut(s)	375, 457, 477
BspANI	GGCC	2 cut(s)	31, 140
BspCNI	CTCAG	2 cut(s)	62, 148
BspOI	GCTAGC	1 cut(s)	98
BspPI	GGATC	1 cut(s)	472
BsrDI	GCAATG	1 cut(s)	333
BsrFI	RCCGGY	1 cut(s)	16
BsrGI	TGTACA	1 cut(s)	297
BsrI	ACTGG	2 cut(s)	40, 371
BssAI	RCCGGY	1 cut(s)	16
BssMI	GATC	3 cut(s)	375, 457, 477
Bst4CI	ACNGT	2 cut(s)	197, 455
BstAUI	TGTACA	1 cut(s)	297
BstC8I	GCNNGC	1 cut(s)	96
BstDEI	CTNAG	2 cut(s)	49, 135
BstF5I	GGATG	1 cut(s)	141
BstHHI	GCGC	1 cut(s)	273
BstKTI	GATC	3 cut(s)	378, 460, 480
BstMAI	GTCTC	2 cut(s)	119, 220
BstMBI	GATC	3 cut(s)	375, 457, 477
BstV1I	GCAGC	2 cut(s)	16, 285
BstV2I	GAAGAC	1 cut(s)	19
BsuRI	GGCC	2 cut(s)	31, 140
BtsCI	GGATG	1 cut(s)	141
BtsIMutI	CAGTG	2 cut(s)	378, 460
Cac8I	GCNNGC	1 cut(s)	96
CfoI	GCGC	1 cut(s)	273
Cfr10I	RCCGGY	1 cut(s)	16
Cfr13I	GGNCC	1 cut(s)	197
Csp6I	GTAC	1 cut(s)	298
CviAII	CATG	2 cut(s)	67, 301
CviJI	RGCY	7 cut(s)	31, 48, 94, 98, 140, 276, 359
CviKI_1	RGCY	7 cut(s)	31, 48, 94, 98, 140, 276, 359
CviQI	GTAC	1 cut(s)	298
DdeI	CTNAG	2 cut(s)	49, 135
DpnI	GATC	3 cut(s)	377, 459, 479
DpnII	GATC	3 cut(s)	375, 457, 477
Eco147I	AGGCCT	1 cut(s)	31
Eco47I	GGWCC	1 cut(s)	197
Esp3I	CGTCTC	1 cut(s)	119
FaeI	CATG	2 cut(s)	70, 304
FaiI	YATR	3 cut(s)	68, 302, 439
FatI	CATG	2 cut(s)	66, 300
Fnu4HI	GCNGC	2 cut(s)	5, 274
FokI	GGATG	1 cut(s)	128
Fsp4HI	GCNGC	2 cut(s)	5, 274
FspBI	CTAG	1 cut(s)	95
GlaI	GCGC	1 cut(s)	272
GluI	GCNGC	2 cut(s)	5, 274
HaeIII	GGCC	2 cut(s)	31, 140
HapII	CCGG	1 cut(s)	17
HhaI	GCGC	1 cut(s)	273
Hin1II	CATG	2 cut(s)	70, 304
Hin6I	GCGC	1 cut(s)	271
HinP1I	GCGC	1 cut(s)	271
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HinfI	GANTC	2 cut(s)	77, 159
HpaII	CCGG	1 cut(s)	17
Hpy166II	GTNNAC	2 cut(s)	76, 298
Hpy188I	TCNGA	3 cut(s)	52, 90, 187
Hpy188III	TCNNGA	1 cut(s)	200
Hpy8I	GTNNAC	2 cut(s)	76, 298
HpyAV	CCTTC	1 cut(s)	155
HpyCH4III	ACNGT	2 cut(s)	197, 455
HpyCH4V	TGCA	2 cut(s)	4, 308
HpyF3I	CTNAG	2 cut(s)	49, 135
Hsp92II	CATG	2 cut(s)	70, 304
HspAI	GCGC	1 cut(s)	271
Kzo9I	GATC	3 cut(s)	375, 457, 477
LpnPI	CCDG	7 cut(s)	9, 21, 30, 122, 213, 384, 393
Lsp1109I	GCAGC	2 cut(s)	16, 285
LweI	GCATC	2 cut(s)	29, 317
MaeI	CTAG	1 cut(s)	95
MalI	GATC	3 cut(s)	377, 459, 479
MboI	GATC	3 cut(s)	375, 457, 477
MboII	GAAGA	1 cut(s)	24
MfeI	CAATTG	1 cut(s)	149
MluCI	AATT	5 cut(s)	149, 385, 416, 424, 434
MlyI	GAGTC	2 cut(s)	71, 168
MmeI	TCCRAC	1 cut(s)	298
MnlI	CCTC	3 cut(s)	21, 184, 423
MslI	CAYNNNNRTG	1 cut(s)	371
MspI	CCGG	1 cut(s)	17
MunI	CAATTG	1 cut(s)	149
NdeII	GATC	3 cut(s)	375, 457, 477
NheI	GCTAGC	1 cut(s)	94
NlaIII	CATG	2 cut(s)	70, 304
NmeAIII	GCCGAG	1 cut(s)	302
PceI	AGGCCT	1 cut(s)	31
PkrI	GCNGC	2 cut(s)	6, 275
PleI	GAGTC	2 cut(s)	71, 167
PpsI	GAGTC	2 cut(s)	71, 167
PspPI	GGNCC	1 cut(s)	197
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
RseI	CAYNNNNRTG	1 cut(s)	371
SatI	GCNGC	2 cut(s)	5, 274
Sau3AI	GATC	3 cut(s)	375, 457, 477
Sau96I	GGNCC	1 cut(s)	197
SchI	GAGTC	2 cut(s)	71, 168
SetI	ASST	3 cut(s)	96, 100, 361
SfaNI	GCATC	2 cut(s)	29, 317
SinI	GGWCC	1 cut(s)	197
SmiMI	CAYNNNNRTG	1 cut(s)	371
Sse9I	AATT	5 cut(s)	149, 385, 416, 424, 434
SseBI	AGGCCT	1 cut(s)	31
SspMI	CTAG	1 cut(s)	95
StuI	AGGCCT	1 cut(s)	31
TaaI	ACNGT	2 cut(s)	197, 455
TaqI	TCGA	2 cut(s)	265, 428
TasI	AATT	5 cut(s)	149, 385, 416, 424, 434
TatI	WGTACW	1 cut(s)	297
TscAI	CASTG	2 cut(s)	378, 460
TseI	GCWGC	2 cut(s)	4, 273
TspGWI	ACGGA	1 cut(s)	56
TspRI	CASTG	2 cut(s)	378, 460
VpaK11BI	GGWCC	1 cut(s)	197
XapI	RAATTY	2 cut(s)	385, 416
XcmI	CCANNNNNNNNNTGG	1 cut(s)	148
XspI	CTAG	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.