Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0005333

Physical Location & Seq

Genomic Coordinates Forward (+)

16946247 .. 16948175

Gene Structure 1929 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG188800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGAGAAGACTAAATCCAGGGTCCAATTCAGAGAGCAAACCACCAATTTTCTCTCCAAATTCAACATCCCATGAATTCTACAAGCACCCAAGTAGGCTTATACAAGGGGAAGGTCCTGATGTGATTGCTATCTCTTCTATAGCTATTGGTTCAATTTCTTTGATACTTGGGGACATAGGTCGAAGGCGTAGTCGAGTAACTTTGTTGAAAGTTTACATGGTTGCATCATCTGTTGGAGTGCTTCTTTCCATTGCTTGTGTTGCCAATGGGAATGTAACATTAGAGGTTTTCCAAACTCCCAATAGATGGGAAACCCACAAGTTTGAACTTCTTGAGGCCGCTCGCACTGCAATTGGATTCCTGAGCTTTGCTCTTGCTATGCTGGAGAAGGTGTCATTTGTTGTACTTTCCAGTATTATAGAAGGAATGAAATGGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Jagunal

Protein Analysis

146

Amino Acids

15.99

Weight (kDa)

9.57

Isoelectric Point (pI)

49.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51510
fragaria_vesca	FvH4_4g13180 FvH4_4g13180 FvH4_4g13180
malus_domestica	MD07G1255100.v1.1
prunus_persica	Prupe.2G278900_v2.0.a1 Prupe.2G279400_v2.0.a1
pyrus_communis	pycom01g19500 pycom07g22830
rosa_chinensis	RchiOBHm_Chr4g0409771 RchiOBHm_Chr4g0413311
rosa_laevigata	RLG00000008225
rosa_multiflora	Rmu_sc0009573.1_g000005 Rmu_sc0009860.1_g000004
rosa_roxburghii	Rroxscaffold_5G00357240
rosa_rugosa	Rorug04G0119500 Rorug04G0119600 Rorug04G0119700 Rorug04G0119800 Rorug04G0119900
rosa_samantha	Rh2BG188800 Rh4AG179300 Rh4BG178400 Rh4CG189900 Rh4DG174400 Rh5AG393900 Rh6DG341500 Rh7BG185600
rosa_wichuraiana	Rw4G014900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	306
AccBSI	CCGCTC	1 cut(s)	341
AciI	CCGC	1 cut(s)	339
AcsI	RAATTY	2 cut(s)	58, 74
AfaI	GTAC	1 cut(s)	405
AfiI	CCNNNNNNNGG	1 cut(s)	306
AgsI	TTSAA	4 cut(s)	63, 153, 208, 326
AjnI	CCWGG	1 cut(s)	16
AluBI	AGCT	2 cut(s)	143, 366
AluI	AGCT	2 cut(s)	143, 366
AoxI	GGCC	1 cut(s)	336
ApoI	RAATTY	2 cut(s)	58, 74
ArsI	GACNNNNNNTTYG	2 cut(s)	175, 207
AspS9I	GGNCC	2 cut(s)	21, 113
AvaII	GGWCC	2 cut(s)	21, 113
BbsI	GAAGAC	1 cut(s)	13
BccI	CCATC	1 cut(s)	300
BciT130I	CCWGG	1 cut(s)	18
BfmI	CTRYAG	1 cut(s)	138
BisI	GCNGC	1 cut(s)	339
BlsI	GCNGC	1 cut(s)	340
Bme1390I	CCNGG	1 cut(s)	18
Bme18I	GGWCC	2 cut(s)	21, 113
BmgT120I	GGNCC	2 cut(s)	21, 113
BmiI	GGNNCC	1 cut(s)	22
BmrFI	CCNGG	1 cut(s)	18
BmsI	GCATC	1 cut(s)	233
BoxI	GACNNNNGTC	1 cut(s)	177
BpiI	GAAGAC	1 cut(s)	13
BplI	GAGNNNNNCTC	2 cut(s)	355, 387
BpmI	CTGGAG	1 cut(s)	404
Bpu10I	CCTNAGC	1 cut(s)	362
BpuEI	CTTGAG	1 cut(s)	353
BsaBI	GATNNNNATC	1 cut(s)	128
BsaJI	CCNNGG	1 cut(s)	17
BsaXI	ACNNNNNCTCC	2 cut(s)	377, 407
Bsc4I	CCNNNNNNNGG	1 cut(s)	306
Bse1I	ACTGG	1 cut(s)	411
Bse3DI	GCAATG	1 cut(s)	249
Bse8I	GATNNNNATC	1 cut(s)	128
BseBI	CCWGG	1 cut(s)	18
BseDI	CCNNGG	1 cut(s)	17
BseGI	GGATG	1 cut(s)	65
BseJI	GATNNNNATC	1 cut(s)	128
BseLI	CCNNNNNNNGG	1 cut(s)	306
BseMI	GCAATG	1 cut(s)	249
BseMII	CTCAG	1 cut(s)	353
BseNI	ACTGG	1 cut(s)	411
BshFI	GGCC	1 cut(s)	338
BslFI	GGGAC	1 cut(s)	185
BslI	CCNNNNNNNGG	1 cut(s)	306
BsmFI	GGGAC	1 cut(s)	185
BsnI	GGCC	1 cut(s)	338
BspACI	CCGC	1 cut(s)	339
BspANI	GGCC	1 cut(s)	338
BspCNI	CTCAG	1 cut(s)	354
BspLI	GGNNCC	1 cut(s)	22
BsrBI	CCGCTC	1 cut(s)	341
BsrDI	GCAATG	1 cut(s)	249
BsrI	ACTGG	1 cut(s)	411
BssECI	CCNNGG	1 cut(s)	17
Bst2UI	CCWGG	1 cut(s)	18
Bst6I	CTCTTC	1 cut(s)	139
BstC8I	GCNNGC	1 cut(s)	343
BstDEI	CTNAG	1 cut(s)	362
BstF5I	GGATG	1 cut(s)	65
BstMWI	GCNNNNNNNGC	2 cut(s)	260, 347
BstNI	CCWGG	1 cut(s)	18
BstPAI	GACNNNNGTC	1 cut(s)	177
BstSCI	CCNGG	1 cut(s)	16
BstSFI	CTRYAG	1 cut(s)	138
BstV2I	GAAGAC	1 cut(s)	13
BsuRI	GGCC	1 cut(s)	338
BtsCI	GGATG	1 cut(s)	65
BtsI	GCAGTG	1 cut(s)	345
BtsIMutI	CAGTG	1 cut(s)	345
Cac8I	GCNNGC	1 cut(s)	343
Cfr13I	GGNCC	2 cut(s)	21, 113
Csp6I	GTAC	1 cut(s)	404
CviAII	CATG	2 cut(s)	71, 217
CviJI	RGCY	5 cut(s)	97, 143, 338, 366, 436
CviKI_1	RGCY	5 cut(s)	97, 143, 338, 366, 436
CviQI	GTAC	1 cut(s)	404
DdeI	CTNAG	1 cut(s)	362
Eam1104I	CTCTTC	1 cut(s)	139
EarI	CTCTTC	1 cut(s)	139
Eco47I	GGWCC	2 cut(s)	21, 113
EcoO109I	RGGNCCY	1 cut(s)	113
EcoRI	GAATTC	1 cut(s)	74
EcoRII	CCWGG	1 cut(s)	16
FaeI	CATG	2 cut(s)	74, 220
FaiI	YATR	7 cut(s)	72, 101, 140, 176, 218, 380, 419
FaqI	GGGAC	1 cut(s)	185
FatI	CATG	2 cut(s)	70, 216
Fnu4HI	GCNGC	1 cut(s)	339
FokI	GGATG	1 cut(s)	52
Fsp4HI	GCNGC	1 cut(s)	339
GluI	GCNGC	1 cut(s)	339
GsuI	CTGGAG	1 cut(s)	404
HaeIII	GGCC	1 cut(s)	338
Hin1II	CATG	2 cut(s)	74, 220
HinfI	GANTC	1 cut(s)	357
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	1 cut(s)	31
Hpy188III	TCNNGA	3 cut(s)	116, 332, 361
Hpy8I	GTNNAC	1 cut(s)	214
HpyAV	CCTTC	4 cut(s)	104, 177, 382, 416
HpyCH4V	TGCA	2 cut(s)	224, 350
HpyF10VI	GCNNNNNNNGC	2 cut(s)	260, 347
HpyF3I	CTNAG	1 cut(s)	362
Hsp92II	CATG	2 cut(s)	74, 220
LpnPI	CCDG	6 cut(s)	3, 30, 129, 368, 374, 424
LweI	GCATC	1 cut(s)	233
MaeIII	GTNAC	2 cut(s)	196, 274
MbiI	CCGCTC	1 cut(s)	341
MboII	GAAGA	2 cut(s)	18, 126
MfeI	CAATTG	1 cut(s)	351
MluCI	AATT	6 cut(s)	25, 45, 58, 74, 153, 351
MmeI	TCCRAC	1 cut(s)	214
MnlI	CCTC	2 cut(s)	277, 328
MspR9I	CCNGG	1 cut(s)	18
MunI	CAATTG	1 cut(s)	351
MvaI	CCWGG	1 cut(s)	18
MwoI	GCNNNNNNNGC	2 cut(s)	260, 347
NlaIII	CATG	2 cut(s)	74, 220
NlaIV	GGNNCC	1 cut(s)	22
PfeI	GAWTC	1 cut(s)	357
PflMI	CCANNNNNTGG	1 cut(s)	306
PkrI	GCNGC	1 cut(s)	340
PpuMI	RGGWCCY	1 cut(s)	113
PshAI	GACNNNNGTC	1 cut(s)	177
Psp5II	RGGWCCY	1 cut(s)	113
Psp6I	CCWGG	1 cut(s)	16
PspGI	CCWGG	1 cut(s)	16
PspN4I	GGNNCC	1 cut(s)	22
PspPI	GGNCC	2 cut(s)	21, 113
PspPPI	RGGWCCY	1 cut(s)	113
RsaI	GTAC	1 cut(s)	405
RsaNI	GTAC	1 cut(s)	404
SatI	GCNGC	1 cut(s)	339
Sau96I	GGNCC	2 cut(s)	21, 113
ScrFI	CCNGG	1 cut(s)	18
SetI	ASST	6 cut(s)	115, 145, 181, 288, 368, 393
SfaNI	GCATC	1 cut(s)	233
SfcI	CTRYAG	1 cut(s)	138
SinI	GGWCC	2 cut(s)	21, 113
SmlI	CTYRAG	1 cut(s)	332
SmoI	CTYRAG	1 cut(s)	332
Sse9I	AATT	6 cut(s)	25, 45, 58, 74, 153, 351
SsiI	CCGC	1 cut(s)	339
StyD4I	CCNGG	1 cut(s)	16
TaqI	TCGA	2 cut(s)	181, 193
TasI	AATT	6 cut(s)	25, 45, 58, 74, 153, 351
TatI	WGTACW	1 cut(s)	403
TauI	GCSGC	1 cut(s)	341
TfiI	GAWTC	1 cut(s)	357
TscAI	CASTG	1 cut(s)	352
TspDTI	ATGAA	1 cut(s)	87
TspRI	CASTG	1 cut(s)	352
Van91I	CCANNNNNTGG	1 cut(s)	306
VpaK11BI	GGWCC	2 cut(s)	21, 113
XapI	RAATTY	2 cut(s)	58, 74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.