RchiOBHm_Chr4g0409771

Jagunal, ER re-organisation during oogenesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0005333
Physical Location & Seq
Reverse (-)
33407054 .. 33408976
1923 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38075

Sequence Viewer

Length: 375 bp
ATGAAGGTCCCGAAGTCGCAACTAAAGGCTGTCTTTCAGCTGATAGGAGTCCTATATACATTTCTTTTTACTTCCAAAGGGGAAGATCCTGATGTGATTGCTATCGCTTCTATAGCTATTGGTTCAATTTCTTTGATACTTGGGGACTTAGGTCGAAGGCGTAGTCGAGTAACTTTGTTGAAAGTTTACATGGTTGCATCATCTGTTGGAGTGCTTCTTTCCATTGCTTGTGTTGCCAATGGGAATGTAACATTAGAGGTTTTCCAAACTCCCAATAGATGGGAAACCCACAAGTTTGAACTTCTTGAGGCCGCTCGCACTGCAATTGGATTCCTGGTACAAATATTCATGTGTTTATTTGTGGAATGCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jagunal

Protein Analysis

124

Amino Acids

13.62

Weight (kDa)

8.93

Isoelectric Point (pI)

42.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 279
AccBSI CCGCTC 1 cut(s) 314
AciI CCGC 1 cut(s) 312
AclWI GGATC 1 cut(s) 80
AfaI GTAC 1 cut(s) 339
AfiI CCNNNNNNNGG 1 cut(s) 279
AgsI TTSAA 3 cut(s) 126, 181, 299
AjnI CCWGG 1 cut(s) 333
AluBI AGCT 2 cut(s) 40, 116
AluI AGCT 2 cut(s) 40, 116
AlwI GGATC 1 cut(s) 80
AoxI GGCC 1 cut(s) 309
ArsI GACNNNNNNTTYG 2 cut(s) 148, 180
AspS9I GGNCC 1 cut(s) 7
AvaII GGWCC 1 cut(s) 7
BccI CCATC 1 cut(s) 273
BciT130I CCWGG 1 cut(s) 335
BfmI CTRYAG 1 cut(s) 111
BisI GCNGC 1 cut(s) 312
BlsI GCNGC 1 cut(s) 313
Bme1390I CCNGG 1 cut(s) 335
Bme18I GGWCC 1 cut(s) 7
BmgT120I GGNCC 1 cut(s) 7
BmiI GGNNCC 1 cut(s) 9
BmrFI CCNGG 1 cut(s) 335
BmsI GCATC 1 cut(s) 206
BoxI GACNNNNGTC 1 cut(s) 150
BpuEI CTTGAG 1 cut(s) 326
BsaBI GATNNNNATC 1 cut(s) 101
Bsc4I CCNNNNNNNGG 1 cut(s) 279
Bse3DI GCAATG 1 cut(s) 222
Bse8I GATNNNNATC 1 cut(s) 101
BseBI CCWGG 1 cut(s) 335
BseJI GATNNNNATC 1 cut(s) 101
BseLI CCNNNNNNNGG 1 cut(s) 279
BseMI GCAATG 1 cut(s) 222
BshFI GGCC 1 cut(s) 311
BslFI GGGAC 1 cut(s) 158
BslI CCNNNNNNNGG 1 cut(s) 279
BsmFI GGGAC 1 cut(s) 158
BsmI GAATGC 1 cut(s) 371
BsnI GGCC 1 cut(s) 311
Bsp143I GATC 1 cut(s) 85
BspACI CCGC 1 cut(s) 312
BspANI GGCC 1 cut(s) 311
BspLI GGNNCC 1 cut(s) 9
BspPI GGATC 1 cut(s) 80
BsrBI CCGCTC 1 cut(s) 314
BsrDI GCAATG 1 cut(s) 222
BssMI GATC 1 cut(s) 85
Bst2UI CCWGG 1 cut(s) 335
BstC8I GCNNGC 1 cut(s) 316
BstDEI CTNAG 1 cut(s) 148
BstKTI GATC 1 cut(s) 88
BstMBI GATC 1 cut(s) 85
BstMWI GCNNNNNNNGC 3 cut(s) 113, 233, 320
BstNI CCWGG 1 cut(s) 335
BstPAI GACNNNNGTC 1 cut(s) 150
BstSCI CCNGG 1 cut(s) 333
BstSFI CTRYAG 1 cut(s) 111
BstX2I RGATCY 1 cut(s) 85
BstYI RGATCY 1 cut(s) 85
BsuRI GGCC 1 cut(s) 311
BtsI GCAGTG 1 cut(s) 318
BtsIMutI CAGTG 1 cut(s) 318
Cac8I GCNNGC 1 cut(s) 316
Cfr13I GGNCC 1 cut(s) 7
Csp6I GTAC 1 cut(s) 338
CviAII CATG 2 cut(s) 190, 349
CviJI RGCY 4 cut(s) 29, 40, 116, 311
CviKI_1 RGCY 4 cut(s) 29, 40, 116, 311
CviQI GTAC 1 cut(s) 338
DdeI CTNAG 1 cut(s) 148
DpnI GATC 1 cut(s) 87
DpnII GATC 1 cut(s) 85
Eco47I GGWCC 1 cut(s) 7
EcoO109I RGGNCCY 1 cut(s) 7
EcoRII CCWGG 1 cut(s) 333
FaeI CATG 2 cut(s) 193, 352
FaiI YATR 5 cut(s) 55, 57, 113, 191, 350
FalI AAGNNNNNCTT 2 cut(s) 17, 49
FaqI GGGAC 1 cut(s) 158
FatI CATG 2 cut(s) 189, 348
Fnu4HI GCNGC 1 cut(s) 312
Fsp4HI GCNGC 1 cut(s) 312
GluI GCNGC 1 cut(s) 312
HaeIII GGCC 1 cut(s) 311
Hin1II CATG 2 cut(s) 193, 352
HinfI GANTC 2 cut(s) 48, 330
Hpy166II GTNNAC 1 cut(s) 187
Hpy188III TCNNGA 3 cut(s) 10, 89, 305
Hpy8I GTNNAC 1 cut(s) 187
HpyAV CCTTC 1 cut(s) 150
HpyCH4V TGCA 2 cut(s) 197, 323
HpyF10VI GCNNNNNNNGC 3 cut(s) 113, 233, 320
HpyF3I CTNAG 1 cut(s) 148
Hsp92II CATG 2 cut(s) 193, 352
Kzo9I GATC 1 cut(s) 85
LpnPI CCDG 3 cut(s) 102, 320, 347
LweI GCATC 1 cut(s) 206
MaeIII GTNAC 2 cut(s) 169, 247
MalI GATC 1 cut(s) 87
MbiI CCGCTC 1 cut(s) 314
MboI GATC 1 cut(s) 85
MboII GAAGA 1 cut(s) 95
MfeI CAATTG 1 cut(s) 324
MflI RGATCY 1 cut(s) 85
MluCI AATT 2 cut(s) 126, 324
MlyI GAGTC 1 cut(s) 57
MmeI TCCRAC 1 cut(s) 187
MnlI CCTC 2 cut(s) 250, 301
MspA1I CMGCKG 1 cut(s) 40
MspR9I CCNGG 1 cut(s) 335
MunI CAATTG 1 cut(s) 324
Mva1269I GAATGC 1 cut(s) 371
MvaI CCWGG 1 cut(s) 335
MwoI GCNNNNNNNGC 3 cut(s) 113, 233, 320
NdeII GATC 1 cut(s) 85
NlaIII CATG 2 cut(s) 193, 352
NlaIV GGNNCC 1 cut(s) 9
PctI GAATGC 1 cut(s) 371
PfeI GAWTC 1 cut(s) 330
PflMI CCANNNNNTGG 1 cut(s) 279
PkrI GCNGC 1 cut(s) 313
PleI GAGTC 1 cut(s) 56
PpsI GAGTC 1 cut(s) 56
PpuMI RGGWCCY 1 cut(s) 7
PshAI GACNNNNGTC 1 cut(s) 150
Psp5II RGGWCCY 1 cut(s) 7
Psp6I CCWGG 1 cut(s) 333
PspGI CCWGG 1 cut(s) 333
PspN4I GGNNCC 1 cut(s) 9
PspPI GGNCC 1 cut(s) 7
PspPPI RGGWCCY 1 cut(s) 7
PsuI RGATCY 1 cut(s) 85
PvuII CAGCTG 1 cut(s) 40
RsaI GTAC 1 cut(s) 339
RsaNI GTAC 1 cut(s) 338
SatI GCNGC 1 cut(s) 312
Sau3AI GATC 1 cut(s) 85
Sau96I GGNCC 1 cut(s) 7
SchI GAGTC 1 cut(s) 57
ScrFI CCNGG 1 cut(s) 335
SetI ASST 5 cut(s) 9, 42, 118, 154, 261
SfaNI GCATC 1 cut(s) 206
SfcI CTRYAG 1 cut(s) 111
SinI GGWCC 1 cut(s) 7
SmlI CTYRAG 1 cut(s) 305
SmoI CTYRAG 1 cut(s) 305
Sse9I AATT 2 cut(s) 126, 324
SsiI CCGC 1 cut(s) 312
SspI AATATT 1 cut(s) 345
StyD4I CCNGG 1 cut(s) 333
TaqI TCGA 2 cut(s) 154, 166
TasI AATT 2 cut(s) 126, 324
TauI GCSGC 1 cut(s) 314
TfiI GAWTC 1 cut(s) 330
TscAI CASTG 1 cut(s) 325
TspDTI ATGAA 2 cut(s) 17, 337
TspRI CASTG 1 cut(s) 325
Van91I CCANNNNNTGG 1 cut(s) 279
VpaK11BI GGWCC 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.