Rorug04G0119800

Jagunal, ER re-organisation during oogenesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0005333
Physical Location & Seq
Forward (+)
18956868 .. 18957203
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0119800.1

Sequence Viewer

Length: 336 bp
ATGCTCAGGGATGCTTCTGGACATTTGTTAACTGGAATCGGTAGACCACTTGTTGGTTTGTTGTCAGTAGAGCATGCTGAGCTGCTTGCTTGTAAATGTGCAGTGGAGTTTATCATGGAGCAAGTTGTTCACCCTGGGATTTTGGAAATGGATTTATTGGTTGATCAACAACAATTGACCACTAAAGGGGACTCCAACTCTTCTTTGTCGGGATGTGTTTATGAGGATTTAATGGTGCAATTGGCTGACTTGCCAACTATACGCATTACTCATGTCAATAGAAAAGGCAACATGGCAGCACATTTGGTGGCTGCTCAAGCTAGTATTTTAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jagunal

Protein Analysis

111

Amino Acids

11.97

Weight (kDa)

5.62

Isoelectric Point (pI)

21.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 2 - 106 2.2e-12 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 53
AccI GTMKAC 1 cut(s) 43
AfiI CCNNNNNNNGG 2 cut(s) 53, 186
AjnI CCWGG 1 cut(s) 133
AluBI AGCT 2 cut(s) 82, 320
AluI AGCT 2 cut(s) 82, 320
ApeKI GCWGC 3 cut(s) 82, 296, 311
AsuHPI GGTGA 1 cut(s) 122
BbvI GCAGC 3 cut(s) 69, 298, 308
BciT130I CCWGG 1 cut(s) 135
BclI TGATCA 1 cut(s) 163
BfaI CTAG 1 cut(s) 321
BisI GCNGC 3 cut(s) 83, 297, 312
BlpI GCTNAGC 1 cut(s) 78
BlsI GCNGC 3 cut(s) 84, 298, 313
Bme1390I CCNGG 1 cut(s) 135
BmrFI CCNGG 1 cut(s) 135
Bpu10I CCTNAGC 1 cut(s) 5
Bpu1102I GCTNAGC 1 cut(s) 78
BpuEI CTTGAG 1 cut(s) 300
BsaJI CCNNGG 2 cut(s) 133, 134
Bsc4I CCNNNNNNNGG 2 cut(s) 53, 186
Bse1I ACTGG 1 cut(s) 37
BseBI CCWGG 1 cut(s) 135
BseDI CCNNGG 2 cut(s) 133, 134
BseGI GGATG 2 cut(s) 16, 218
BseLI CCNNNNNNNGG 2 cut(s) 53, 186
BseMII CTCAG 2 cut(s) 19, 69
BseNI ACTGG 1 cut(s) 37
BseXI GCAGC 3 cut(s) 69, 298, 308
BsgI GTGCAG 1 cut(s) 120
BslFI GGGAC 1 cut(s) 203
BslI CCNNNNNNNGG 2 cut(s) 53, 186
BsmFI GGGAC 1 cut(s) 203
Bsp143I GATC 1 cut(s) 163
Bsp1720I GCTNAGC 1 cut(s) 78
BspCNI CTCAG 2 cut(s) 18, 70
BsrI ACTGG 1 cut(s) 37
BssECI CCNNGG 2 cut(s) 133, 134
BssMI GATC 1 cut(s) 163
Bst2UI CCWGG 1 cut(s) 135
Bst6I CTCTTC 1 cut(s) 205
BstC8I GCNNGC 2 cut(s) 75, 87
BstDEI CTNAG 2 cut(s) 5, 78
BstF5I GGATG 2 cut(s) 16, 218
BstKTI GATC 1 cut(s) 166
BstMBI GATC 1 cut(s) 163
BstMWI GCNNNNNNNGC 2 cut(s) 79, 317
BstNI CCWGG 1 cut(s) 135
BstNSI RCATGY 1 cut(s) 77
BstSCI CCNGG 1 cut(s) 133
BstV1I GCAGC 3 cut(s) 69, 298, 308
BtsCI GGATG 2 cut(s) 16, 218
BtsI GCAGTG 1 cut(s) 108
BtsIMutI CAGTG 1 cut(s) 108
Cac8I GCNNGC 2 cut(s) 75, 87
CviAII CATG 4 cut(s) 74, 115, 272, 292
CviJI RGCY 4 cut(s) 82, 245, 311, 320
CviKI_1 RGCY 4 cut(s) 82, 245, 311, 320
DdeI CTNAG 2 cut(s) 5, 78
DpnI GATC 1 cut(s) 165
DpnII GATC 1 cut(s) 163
DraI TTTAAA 1 cut(s) 330
Eam1104I CTCTTC 1 cut(s) 205
EarI CTCTTC 1 cut(s) 205
EcoRII CCWGG 1 cut(s) 133
FaeI CATG 4 cut(s) 77, 118, 275, 295
FaiI YATR 6 cut(s) 75, 116, 222, 260, 273, 293
FaqI GGGAC 1 cut(s) 203
FatI CATG 4 cut(s) 73, 114, 271, 291
FbaI TGATCA 1 cut(s) 163
FblI GTMKAC 1 cut(s) 43
Fnu4HI GCNGC 3 cut(s) 83, 297, 312
FokI GGATG 2 cut(s) 23, 225
Fsp4HI GCNGC 3 cut(s) 83, 297, 312
FspBI CTAG 1 cut(s) 321
GluI GCNGC 3 cut(s) 83, 297, 312
Hin1II CATG 4 cut(s) 77, 118, 275, 295
HincII GTYRAC 1 cut(s) 30
HindII GTYRAC 1 cut(s) 30
HinfI GANTC 2 cut(s) 36, 191
HpaI GTTAAC 1 cut(s) 30
HphI GGTGA 1 cut(s) 122
Hpy166II GTNNAC 3 cut(s) 30, 44, 130
Hpy188III TCNNGA 2 cut(s) 18, 210
Hpy8I GTNNAC 3 cut(s) 30, 44, 130
HpyCH4V TGCA 2 cut(s) 101, 238
HpyF10VI GCNNNNNNNGC 2 cut(s) 79, 317
HpyF3I CTNAG 2 cut(s) 5, 78
Hsp92II CATG 4 cut(s) 77, 118, 275, 295
Ksp22I TGATCA 1 cut(s) 163
KspAI GTTAAC 1 cut(s) 30
Kzo9I GATC 1 cut(s) 163
LmnI GCTCC 1 cut(s) 118
LpnPI CCDG 4 cut(s) 3, 18, 120, 147
Lsp1109I GCAGC 3 cut(s) 69, 298, 308
MaeI CTAG 1 cut(s) 321
MalI GATC 1 cut(s) 165
MboI GATC 1 cut(s) 163
MboII GAAGA 1 cut(s) 192
MfeI CAATTG 2 cut(s) 173, 239
MluCI AATT 2 cut(s) 173, 239
MlyI GAGTC 1 cut(s) 185
MmeI TCCRAC 1 cut(s) 219
MnlI CCTC 1 cut(s) 217
MseI TTAA 3 cut(s) 29, 230, 329
MspR9I CCNGG 1 cut(s) 135
MunI CAATTG 2 cut(s) 173, 239
MvaI CCWGG 1 cut(s) 135
MwoI GCNNNNNNNGC 2 cut(s) 79, 317
NdeII GATC 1 cut(s) 163
NlaIII CATG 4 cut(s) 77, 118, 275, 295
NspI RCATGY 1 cut(s) 77
PaeI GCATGC 1 cut(s) 77
PasI CCCWGGG 1 cut(s) 134
PfeI GAWTC 1 cut(s) 36
PflMI CCANNNNNTGG 1 cut(s) 53
PkrI GCNGC 3 cut(s) 84, 298, 313
PleI GAGTC 1 cut(s) 185
PpsI GAGTC 1 cut(s) 185
Psp6I CCWGG 1 cut(s) 133
PspGI CCWGG 1 cut(s) 133
SaqAI TTAA 3 cut(s) 29, 230, 329
SatI GCNGC 3 cut(s) 83, 297, 312
Sau3AI GATC 1 cut(s) 163
SchI GAGTC 1 cut(s) 185
ScrFI CCNGG 1 cut(s) 135
SetI ASST 2 cut(s) 84, 322
SmlI CTYRAG 1 cut(s) 315
SmoI CTYRAG 1 cut(s) 315
SphI GCATGC 1 cut(s) 77
Sse9I AATT 2 cut(s) 173, 239
SspMI CTAG 1 cut(s) 321
StyD4I CCNGG 1 cut(s) 133
TasI AATT 2 cut(s) 173, 239
TfiI GAWTC 1 cut(s) 36
Tru1I TTAA 3 cut(s) 29, 230, 329
Tru9I TTAA 3 cut(s) 29, 230, 329
TscAI CASTG 1 cut(s) 108
TseI GCWGC 3 cut(s) 82, 296, 311
TspRI CASTG 1 cut(s) 108
Van91I CCANNNNNTGG 1 cut(s) 53
XceI RCATGY 1 cut(s) 77
XmiI GTMKAC 1 cut(s) 43
XspI CTAG 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.