MD07G1255100.v1.1

Jagunal, ER re-organisation during oogenesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0005333
Physical Location & Seq
Forward (+)
32230924 .. 32233117
2194 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1255100.v1.1.491

Sequence Viewer

Length: 519 bp
ATGCAGCAAAGAAGACCAGCGTCAGGAAGGCCTACTGGAACAGATGGCTCAGATTTCAACTACCGCATGGTGGTTGACTCTCGGTATCAGAAGGTAGCTAAAGGGAAGTCTCGTCTGTACTCTCTTATTCTAACTCAGGCCGTCATTCAATTGACAGGAGTCCTTTATGCTTTTCTGTTTACATCGGATGGGGAAGGTCCAAATGTGATTGCTATCTCATCTGTTGCTATTGGTTCTATTTCTTTGATAATCGGGGAGTTGGGTCGAAGGCGCAGCCGAGTGTCTTTGTTGAAAGTGTACATGGTTGCATCATCTATTGGAATACTTCTCTCCATTGCTTGTGTTGCTAAGGGAAGTTTAACACTAGCGGTTTTGCAAAATTCAAGTAACTGGGAAACAAAGAAATTTGAACTTGTCGAGGCCACTCGCACTGTAATTGCATTCCTGGTTCAAATATTTGCAATCAGCACAACCACTTCTCTCATCGGTAACATGTCTCCTCCGAAAAGAGCCTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jagunal

Protein Analysis

173

Amino Acids

18.58

Weight (kDa)

10.32

Isoelectric Point (pI)

42.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jagunal PF07086 10 - 52 1e-06 Jagunal, ER re-organisation during oogenesis
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 64, 368
AcsI RAATTY 2 cut(s) 379, 404
AfaI GTAC 2 cut(s) 119, 299
AfiI CCNNNNNNNGG 2 cut(s) 23, 70
AflIII ACRYGT 1 cut(s) 492
AgsI TTSAA 6 cut(s) 58, 149, 292, 384, 410, 452
AjnI CCWGG 1 cut(s) 444
AluBI AGCT 1 cut(s) 98
AluI AGCT 1 cut(s) 98
Alw26I GTCTC 2 cut(s) 114, 501
AoxI GGCC 3 cut(s) 29, 138, 420
ApeKI GCWGC 2 cut(s) 4, 273
ApoI RAATTY 2 cut(s) 379, 404
AspLEI GCGC 1 cut(s) 273
AspS9I GGNCC 1 cut(s) 197
AvaII GGWCC 1 cut(s) 197
BbsI GAAGAC 1 cut(s) 19
BbvI GCAGC 2 cut(s) 16, 285
BccI CCATC 2 cut(s) 38, 182
BceAI ACGGC 1 cut(s) 125
BciT130I CCWGG 1 cut(s) 446
BcoDI GTCTC 2 cut(s) 114, 501
BfaI CTAG 1 cut(s) 365
BisI GCNGC 2 cut(s) 5, 274
BlsI GCNGC 2 cut(s) 6, 275
Bme1390I CCNGG 1 cut(s) 446
Bme18I GGWCC 1 cut(s) 197
BmgT120I GGNCC 1 cut(s) 197
BmrFI CCNGG 1 cut(s) 446
BmrI ACTGGG 1 cut(s) 400
BmsI GCATC 1 cut(s) 317
BmuI ACTGGG 1 cut(s) 400
BoxI GACNNNNGTC 2 cut(s) 19, 158
BpiI GAAGAC 1 cut(s) 19
Bpu10I CCTNAGC 1 cut(s) 348
BsaBI GATNNNNATC 1 cut(s) 212
Bsc4I CCNNNNNNNGG 2 cut(s) 23, 70
Bse1I ACTGG 2 cut(s) 40, 395
Bse3DI GCAATG 1 cut(s) 333
Bse8I GATNNNNATC 1 cut(s) 212
BseBI CCWGG 1 cut(s) 446
BseGI GGATG 1 cut(s) 193
BseJI GATNNNNATC 1 cut(s) 212
BseLI CCNNNNNNNGG 2 cut(s) 23, 70
BseMI GCAATG 1 cut(s) 333
BseMII CTCAG 2 cut(s) 63, 149
BseNI ACTGG 2 cut(s) 40, 395
BseRI GAGGAG 1 cut(s) 489
BseXI GCAGC 2 cut(s) 16, 285
BshFI GGCC 3 cut(s) 31, 140, 422
BslI CCNNNNNNNGG 2 cut(s) 23, 70
BsmAI GTCTC 2 cut(s) 114, 501
BsmI GAATGC 1 cut(s) 440
BsnI GGCC 3 cut(s) 31, 140, 422
Bsp1407I TGTACA 1 cut(s) 297
BspACI CCGC 2 cut(s) 64, 368
BspANI GGCC 3 cut(s) 31, 140, 422
BspCNI CTCAG 2 cut(s) 62, 148
BsrDI GCAATG 1 cut(s) 333
BsrGI TGTACA 1 cut(s) 297
BsrI ACTGG 2 cut(s) 40, 395
Bst2UI CCWGG 1 cut(s) 446
Bst4CI ACNGT 1 cut(s) 433
BstAUI TGTACA 1 cut(s) 297
BstDEI CTNAG 3 cut(s) 49, 135, 348
BstF5I GGATG 1 cut(s) 193
BstHHI GCGC 1 cut(s) 273
BstMAI GTCTC 2 cut(s) 114, 501
BstMWI GCNNNNNNNGC 1 cut(s) 344
BstNI CCWGG 1 cut(s) 446
BstNSI RCATGY 1 cut(s) 496
BstPAI GACNNNNGTC 2 cut(s) 19, 158
BstSCI CCNGG 1 cut(s) 444
BstV1I GCAGC 2 cut(s) 16, 285
BstV2I GAAGAC 1 cut(s) 19
BsuRI GGCC 3 cut(s) 31, 140, 422
BtsCI GGATG 1 cut(s) 193
BtsIMutI CAGTG 1 cut(s) 429
CfoI GCGC 1 cut(s) 273
Cfr13I GGNCC 1 cut(s) 197
CseI GACGC 1 cut(s) 9
Csp6I GTAC 2 cut(s) 118, 298
CviAII CATG 3 cut(s) 67, 301, 493
CviJI RGCY 7 cut(s) 31, 48, 98, 140, 276, 422, 512
CviKI_1 RGCY 7 cut(s) 31, 48, 98, 140, 276, 422, 512
CviQI GTAC 2 cut(s) 118, 298
DdeI CTNAG 3 cut(s) 49, 135, 348
Eco147I AGGCCT 1 cut(s) 31
Eco47I GGWCC 1 cut(s) 197
EcoRII CCWGG 1 cut(s) 444
FaeI CATG 3 cut(s) 70, 304, 496
FaiI YATR 5 cut(s) 68, 168, 302, 494, 517
FatI CATG 3 cut(s) 66, 300, 492
Fnu4HI GCNGC 2 cut(s) 5, 274
FokI GGATG 1 cut(s) 200
Fsp4HI GCNGC 2 cut(s) 5, 274
FspBI CTAG 1 cut(s) 365
GlaI GCGC 1 cut(s) 272
GluI GCNGC 2 cut(s) 5, 274
HaeIII GGCC 3 cut(s) 31, 140, 422
HgaI GACGC 1 cut(s) 9
HhaI GCGC 1 cut(s) 273
Hin1II CATG 3 cut(s) 70, 304, 496
Hin6I GCGC 1 cut(s) 271
HinP1I GCGC 1 cut(s) 271
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HinfI GANTC 2 cut(s) 77, 159
Hpy166II GTNNAC 3 cut(s) 76, 180, 298
Hpy188I TCNGA 4 cut(s) 52, 90, 187, 504
Hpy188III TCNNGA 1 cut(s) 24
Hpy8I GTNNAC 3 cut(s) 76, 180, 298
HpyAV CCTTC 4 cut(s) 21, 85, 188, 261
HpyCH4III ACNGT 1 cut(s) 433
HpyCH4V TGCA 5 cut(s) 4, 308, 376, 440, 461
HpyF10VI GCNNNNNNNGC 1 cut(s) 344
HpyF3I CTNAG 3 cut(s) 49, 135, 348
Hsp92II CATG 3 cut(s) 70, 304, 496
HspAI GCGC 1 cut(s) 271
LpnPI CCDG 8 cut(s) 9, 21, 30, 122, 141, 376, 431, 458
Lsp1109I GCAGC 2 cut(s) 16, 285
LweI GCATC 1 cut(s) 317
MaeI CTAG 1 cut(s) 365
MaeIII GTNAC 2 cut(s) 386, 488
MboII GAAGA 1 cut(s) 24
MfeI CAATTG 1 cut(s) 149
MluCI AATT 4 cut(s) 149, 379, 404, 435
MlyI GAGTC 2 cut(s) 71, 168
MnlI CCTC 2 cut(s) 412, 510
MseI TTAA 1 cut(s) 359
MspR9I CCNGG 1 cut(s) 446
MunI CAATTG 1 cut(s) 149
Mva1269I GAATGC 1 cut(s) 440
MvaI CCWGG 1 cut(s) 446
MwoI GCNNNNNNNGC 1 cut(s) 344
NlaIII CATG 3 cut(s) 70, 304, 496
NmeAIII GCCGAG 1 cut(s) 302
NspI RCATGY 1 cut(s) 496
PceI AGGCCT 1 cut(s) 31
PciI ACATGT 1 cut(s) 492
PctI GAATGC 1 cut(s) 440
PkrI GCNGC 2 cut(s) 6, 275
PleI GAGTC 2 cut(s) 71, 167
PpsI GAGTC 2 cut(s) 71, 167
PscI ACATGT 1 cut(s) 492
PshAI GACNNNNGTC 2 cut(s) 19, 158
Psp6I CCWGG 1 cut(s) 444
PspGI CCWGG 1 cut(s) 444
PspPI GGNCC 1 cut(s) 197
RsaI GTAC 2 cut(s) 119, 299
RsaNI GTAC 2 cut(s) 118, 298
SaqAI TTAA 1 cut(s) 359
SatI GCNGC 2 cut(s) 5, 274
Sau96I GGNCC 1 cut(s) 197
SchI GAGTC 2 cut(s) 71, 168
ScrFI CCNGG 1 cut(s) 446
SetI ASST 3 cut(s) 96, 100, 199
SfaNI GCATC 1 cut(s) 317
SinI GGWCC 1 cut(s) 197
Sse9I AATT 4 cut(s) 149, 379, 404, 435
SseBI AGGCCT 1 cut(s) 31
SsiI CCGC 2 cut(s) 64, 368
SspI AATATT 1 cut(s) 456
SspMI CTAG 1 cut(s) 365
StuI AGGCCT 1 cut(s) 31
StyD4I CCNGG 1 cut(s) 444
TaaI ACNGT 1 cut(s) 433
TaqI TCGA 2 cut(s) 265, 417
TasI AATT 4 cut(s) 149, 379, 404, 435
TatI WGTACW 2 cut(s) 117, 297
Tru1I TTAA 1 cut(s) 359
Tru9I TTAA 1 cut(s) 359
TscAI CASTG 1 cut(s) 436
TseI GCWGC 2 cut(s) 4, 273
TspRI CASTG 1 cut(s) 436
VpaK11BI GGWCC 1 cut(s) 197
XapI RAATTY 2 cut(s) 379, 404
XceI RCATGY 1 cut(s) 496
XspI CTAG 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.