Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0005333

Physical Location & Seq

Genomic Coordinates Forward (+)

27910351 .. 27912256

Gene Structure 1906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G278900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGCAGCAGAGAAGATCAGCGTCAGGGAGGCCTACTGGAACGGATGGCTCAGATTTCAACTACCGCATGGTCGTTGACTCTCGTTACCAGAAGGTAGCTAAAGGAAAATCTCGTCTCTCCGCGCTTATTCTCACTCAGGCTGTCATTCAATTGATAGGAGTCCTCGCATTTCTATTTACATCAAATGGGGAAGGTCCCAATGTGATTGCTATTTCATCTTTTGCTATTGGTTCTATTTCTTTGATCATTGGGGAGTTAGGTCGAAGGCGCAGCCGAGTGAGTTTGTTGAAAGTTTACATTGTTGCATCATCTATTGGAATACTTCTCTCCATTGCTTGTGTTGCTACAGGAAATTTAACATTAGAGGTTTTCCAAAATCCAAGTAACTGGGAAACAAAGAAGTTTGAACTTCTCGAGGCCACCCGCACTGCAATTGCGTTCCTGGTACAAATATTTACCGTCAGCACAACTGCTTCTCTCATCAGTAACATGTCTCCTCCAAAAAGGGCCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Jagunal

Protein Analysis

172

Amino Acids

18.46

Weight (kDa)

10.51

Isoelectric Point (pI)

35.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51510
fragaria_vesca	FvH4_4g13180 FvH4_4g13180 FvH4_4g13180
malus_domestica	MD07G1255100.v1.1
prunus_persica	Prupe.2G278900_v2.0.a1 Prupe.2G279400_v2.0.a1
pyrus_communis	pycom01g19500 pycom07g22830
rosa_chinensis	RchiOBHm_Chr4g0409771 RchiOBHm_Chr4g0413311
rosa_laevigata	RLG00000008225
rosa_multiflora	Rmu_sc0009573.1_g000005 Rmu_sc0009860.1_g000004
rosa_roxburghii	Rroxscaffold_5G00357240
rosa_rugosa	Rorug04G0119500 Rorug04G0119600 Rorug04G0119700 Rorug04G0119800 Rorug04G0119900
rosa_samantha	Rh2BG188800 Rh4AG179300 Rh4BG178400 Rh4CG189900 Rh4DG174400 Rh5AG393900 Rh6DG341500 Rh7BG185600
rosa_wichuraiana	Rw4G014900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	122
AciI	CCGC	3 cut(s)	64, 120, 424
AcsI	RAATTY	1 cut(s)	352
AfaI	GTAC	1 cut(s)	447
AflIII	ACRYGT	1 cut(s)	489
AgsI	TTSAA	4 cut(s)	58, 149, 289, 407
AjnI	CCWGG	1 cut(s)	441
AluBI	AGCT	1 cut(s)	98
AluI	AGCT	1 cut(s)	98
Alw26I	GTCTC	2 cut(s)	119, 498
Ama87I	CYCGRG	1 cut(s)	413
AoxI	GGCC	3 cut(s)	29, 417, 507
ApeKI	GCWGC	2 cut(s)	4, 270
ApoI	RAATTY	1 cut(s)	352
AspLEI	GCGC	2 cut(s)	124, 270
AspS9I	GGNCC	2 cut(s)	194, 507
AvaI	CYCGRG	1 cut(s)	413
AvaII	GGWCC	1 cut(s)	194
BbvI	GCAGC	2 cut(s)	16, 282
BccI	CCATC	1 cut(s)	38
BciT130I	CCWGG	1 cut(s)	443
BclI	TGATCA	1 cut(s)	243
BcoDI	GTCTC	2 cut(s)	119, 498
BfmI	CTRYAG	1 cut(s)	345
BisI	GCNGC	2 cut(s)	5, 271
BlsI	GCNGC	2 cut(s)	6, 272
Bme1390I	CCNGG	1 cut(s)	443
Bme18I	GGWCC	1 cut(s)	194
BmeT110I	CYCGRG	1 cut(s)	413
BmgT120I	GGNCC	2 cut(s)	194, 507
BmiI	GGNNCC	1 cut(s)	196
BmrFI	CCNGG	1 cut(s)	443
BmrI	ACTGGG	1 cut(s)	397
BmsI	GCATC	1 cut(s)	314
BmuI	ACTGGG	1 cut(s)	397
Bse1I	ACTGG	2 cut(s)	40, 392
Bse3DI	GCAATG	1 cut(s)	330
BseBI	CCWGG	1 cut(s)	443
BseGI	GGATG	1 cut(s)	49
BseMI	GCAATG	1 cut(s)	330
BseMII	CTCAG	2 cut(s)	63, 149
BseNI	ACTGG	2 cut(s)	40, 392
BseRI	GAGGAG	1 cut(s)	486
BseXI	GCAGC	2 cut(s)	16, 282
Bsh1236I	CGCG	1 cut(s)	122
BshFI	GGCC	3 cut(s)	31, 419, 509
BsiHKCI	CYCGRG	1 cut(s)	413
BslFI	GGGAC	1 cut(s)	180
BsmAI	GTCTC	2 cut(s)	119, 498
BsmBI	CGTCTC	1 cut(s)	119
BsmFI	GGGAC	1 cut(s)	180
BsnI	GGCC	3 cut(s)	31, 419, 509
BsoBI	CYCGRG	1 cut(s)	413
Bsp143I	GATC	2 cut(s)	14, 243
BspACI	CCGC	3 cut(s)	64, 120, 424
BspANI	GGCC	3 cut(s)	31, 419, 509
BspCNI	CTCAG	2 cut(s)	62, 148
BspFNI	CGCG	1 cut(s)	122
BspLI	GGNNCC	1 cut(s)	196
BsrDI	GCAATG	1 cut(s)	330
BsrI	ACTGG	2 cut(s)	40, 392
BssMI	GATC	2 cut(s)	14, 243
Bst2UI	CCWGG	1 cut(s)	443
Bst4CI	ACNGT	1 cut(s)	460
BstDEI	CTNAG	3 cut(s)	49, 135, 513
BstF5I	GGATG	1 cut(s)	49
BstFNI	CGCG	1 cut(s)	122
BstHHI	GCGC	2 cut(s)	124, 270
BstKTI	GATC	2 cut(s)	17, 246
BstMAI	GTCTC	2 cut(s)	119, 498
BstMBI	GATC	2 cut(s)	14, 243
BstMWI	GCNNNNNNNGC	1 cut(s)	341
BstNI	CCWGG	1 cut(s)	443
BstNSI	RCATGY	1 cut(s)	493
BstSCI	CCNGG	1 cut(s)	441
BstSFI	CTRYAG	1 cut(s)	345
BstUI	CGCG	1 cut(s)	122
BstV1I	GCAGC	2 cut(s)	16, 282
BstXI	CCANNNNNNTGG	1 cut(s)	387
BsuRI	GGCC	3 cut(s)	31, 419, 509
BtsCI	GGATG	1 cut(s)	49
BtsI	GCAGTG	1 cut(s)	426
BtsIMutI	CAGTG	1 cut(s)	426
CfoI	GCGC	2 cut(s)	124, 270
Cfr13I	GGNCC	2 cut(s)	194, 507
CseI	GACGC	1 cut(s)	9
Csp6I	GTAC	1 cut(s)	446
CviAII	CATG	2 cut(s)	67, 490
CviJI	RGCY	7 cut(s)	31, 48, 98, 140, 273, 419, 509
CviKI_1	RGCY	7 cut(s)	31, 48, 98, 140, 273, 419, 509
CviQI	GTAC	1 cut(s)	446
DdeI	CTNAG	3 cut(s)	49, 135, 513
DpnI	GATC	2 cut(s)	16, 245
DpnII	GATC	2 cut(s)	14, 243
Eco147I	AGGCCT	1 cut(s)	31
Eco47I	GGWCC	1 cut(s)	194
Eco88I	CYCGRG	1 cut(s)	413
EcoO109I	RGGNCCY	2 cut(s)	194, 507
EcoRII	CCWGG	1 cut(s)	441
Esp3I	CGTCTC	1 cut(s)	119
FaeI	CATG	2 cut(s)	70, 493
FaiI	YATR	2 cut(s)	68, 491
FalI	AAGNNNNNCTT	1 cut(s)	496
FaqI	GGGAC	1 cut(s)	180
FatI	CATG	2 cut(s)	66, 489
FauI	CCCGC	1 cut(s)	431
FbaI	TGATCA	1 cut(s)	243
Fnu4HI	GCNGC	2 cut(s)	5, 271
FokI	GGATG	1 cut(s)	56
Fsp4HI	GCNGC	2 cut(s)	5, 271
GlaI	GCGC	2 cut(s)	123, 269
GluI	GCNGC	2 cut(s)	5, 271
HaeIII	GGCC	3 cut(s)	31, 419, 509
HgaI	GACGC	1 cut(s)	9
HhaI	GCGC	2 cut(s)	124, 270
Hin1II	CATG	2 cut(s)	70, 493
Hin6I	GCGC	2 cut(s)	122, 268
HinP1I	GCGC	2 cut(s)	122, 268
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HinfI	GANTC	2 cut(s)	77, 159
Hpy166II	GTNNAC	2 cut(s)	76, 295
Hpy188I	TCNGA	1 cut(s)	52
Hpy188III	TCNNGA	1 cut(s)	413
Hpy8I	GTNNAC	2 cut(s)	76, 295
HpyAV	CCTTC	3 cut(s)	85, 185, 258
HpyCH4III	ACNGT	1 cut(s)	460
HpyCH4V	TGCA	3 cut(s)	4, 305, 431
HpyF10VI	GCNNNNNNNGC	1 cut(s)	341
HpyF3I	CTNAG	3 cut(s)	49, 135, 513
Hsp92II	CATG	2 cut(s)	70, 493
HspAI	GCGC	2 cut(s)	122, 268
Ksp22I	TGATCA	1 cut(s)	243
Kzo9I	GATC	2 cut(s)	14, 243
LpnPI	CCDG	8 cut(s)	9, 21, 101, 122, 333, 373, 428, 455
Lsp1109I	GCAGC	2 cut(s)	16, 282
LweI	GCATC	1 cut(s)	314
MaeIII	GTNAC	3 cut(s)	83, 383, 485
MalI	GATC	2 cut(s)	16, 245
MboI	GATC	2 cut(s)	14, 243
MboII	GAAGA	1 cut(s)	24
MfeI	CAATTG	2 cut(s)	149, 432
MluCI	AATT	3 cut(s)	149, 352, 432
MlyI	GAGTC	2 cut(s)	71, 168
MnlI	CCTC	5 cut(s)	21, 173, 358, 409, 507
MseI	TTAA	1 cut(s)	356
MspR9I	CCNGG	1 cut(s)	443
MunI	CAATTG	2 cut(s)	149, 432
MvaI	CCWGG	1 cut(s)	443
MvnI	CGCG	1 cut(s)	122
MwoI	GCNNNNNNNGC	1 cut(s)	341
NdeII	GATC	2 cut(s)	14, 243
NlaIII	CATG	2 cut(s)	70, 493
NlaIV	GGNNCC	1 cut(s)	196
NmeAIII	GCCGAG	1 cut(s)	299
NspI	RCATGY	1 cut(s)	493
PaeR7I	CTCGAG	1 cut(s)	413
PceI	AGGCCT	1 cut(s)	31
PciI	ACATGT	1 cut(s)	489
PkrI	GCNGC	2 cut(s)	6, 272
PleI	GAGTC	2 cut(s)	71, 167
PpsI	GAGTC	2 cut(s)	71, 167
PpuMI	RGGWCCY	1 cut(s)	194
PscI	ACATGT	1 cut(s)	489
Psp5II	RGGWCCY	1 cut(s)	194
Psp6I	CCWGG	1 cut(s)	441
PspGI	CCWGG	1 cut(s)	441
PspN4I	GGNNCC	1 cut(s)	196
PspPI	GGNCC	2 cut(s)	194, 507
PspPPI	RGGWCCY	1 cut(s)	194
RsaI	GTAC	1 cut(s)	447
RsaNI	GTAC	1 cut(s)	446
SaqAI	TTAA	1 cut(s)	356
SatI	GCNGC	2 cut(s)	5, 271
Sau3AI	GATC	2 cut(s)	14, 243
Sau96I	GGNCC	2 cut(s)	194, 507
SchI	GAGTC	2 cut(s)	71, 168
ScrFI	CCNGG	1 cut(s)	443
SetI	ASST	5 cut(s)	96, 100, 196, 262, 369
SfaNI	GCATC	1 cut(s)	314
SfcI	CTRYAG	1 cut(s)	345
Sfr274I	CTCGAG	1 cut(s)	413
SinI	GGWCC	1 cut(s)	194
SlaI	CTCGAG	1 cut(s)	413
SmlI	CTYRAG	1 cut(s)	413
SmoI	CTYRAG	1 cut(s)	413
Sse9I	AATT	3 cut(s)	149, 352, 432
SseBI	AGGCCT	1 cut(s)	31
SsiI	CCGC	3 cut(s)	64, 120, 424
SspI	AATATT	1 cut(s)	453
StuI	AGGCCT	1 cut(s)	31
StyD4I	CCNGG	1 cut(s)	441
TaaI	ACNGT	1 cut(s)	460
TaqI	TCGA	2 cut(s)	262, 414
TasI	AATT	3 cut(s)	149, 352, 432
Tru1I	TTAA	1 cut(s)	356
Tru9I	TTAA	1 cut(s)	356
TscAI	CASTG	1 cut(s)	433
TseI	GCWGC	2 cut(s)	4, 270
TspDTI	ATGAA	1 cut(s)	204
TspGWI	ACGGA	1 cut(s)	56
TspRI	CASTG	1 cut(s)	433
VpaK11BI	GGWCC	1 cut(s)	194
XapI	RAATTY	1 cut(s)	352
XceI	RCATGY	1 cut(s)	493
XhoI	CTCGAG	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.