Rorug04G0119600

Jagunal, ER re-organisation during oogenesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0005333
Physical Location & Seq
Forward (+)
18951054 .. 18952193
1140 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0119600.1

Sequence Viewer

Length: 990 bp
ATGGTCAAGGCAGTGAGGATTATTGTTGGGTCGGTGGAGAAGTTGAAGCAGGTGAACTGTACGTATGTCACTCTTGTGCCTAAAGTTAAAACTCCCCAGCATATGAATCAACTACGTCTAATCAGTCTGTGTAATGACATTTACAAAATCGGATCAAAGGTTCTAGCGAACAGGTTGAAGCCTCTGCTGGATTCTTTTATCTCGCCGTTTCAGAGTGCGTTCGTCCGAGGCAGATTGATTTCGGATAATTCATTAGTGGCTTTTGAAGTCTCTCATTGTCTTAAAAGGAGAAGAAGTGGGAAGAAGAGATATTGCTCTTTGAAGCTGGATATGAGCAAGGCGTATGTCCGGATAGAATGGATTTTCTTGGAGGGGGTGATGAGGAGATTGGGTTTTGAGGTATTATCTAAACTTATTATACATGCTGAGAGAATTGACGCATTACATGGAGTAGAAATTTGCAGGGGGCTCCTAGTGTCAGCCATATATTTTTTCGCCGATGACTCCTTTATCTTCTTTAAGGCAGAAGTGGAGGTTGTTCAAGCGGTCAAGAGTCTTCTTCTGGACTATGAACTTGCCTCAGGTCAACAGGTGAACTATCAGAAAAGCTGCAACTCTTTTAGTAAAAATGTGGACTTACCTTCTCAGGAGGATTTGCCTGCTCTACTTGGGGTCAATAGGGTGGAAAAACATGACAAGTATCTTGGGTTGCCCACTGAGATAAGCTACTCCAAGGAGGAAGATTTTTCATTTTTGATTGATAGAGTGCGTAATAGAATGCAAGGGTGGAGGGAGAAAACTTTATCCGTGGATAGTAAGGAAGTGCTAACTAAAGCGGTGGCCCAAGCAATACCTTCGTATGTGATGAGTTGTTTCGAACTTCCTAAACATATGTGTGATGAGATGCACAGGTTGATGGCACGATTTTGGTGGGGAAGCTCGAATGAGGTGAGGAAGATACACTGGCTTTCTAGGGACAAATTGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jagunal

Protein Analysis

329

Amino Acids

37.94

Weight (kDa)

9.35

Isoelectric Point (pI)

38.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 30 - 139 1.4e-10 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 40
Acc36I ACCTGC 1 cut(s) 40
AccIII TCCGGA 1 cut(s) 348
AciI CCGC 2 cut(s) 545, 836
AclWI GGATC 1 cut(s) 160
AcsI RAATTY 1 cut(s) 456
AfaI GTAC 1 cut(s) 61
AgsI TTSAA 5 cut(s) 46, 178, 266, 322, 542
AleI CACNNNNGTG 1 cut(s) 74
AloI GAACNNNNNNTCC 2 cut(s) 144, 176
AluBI AGCT 4 cut(s) 325, 609, 726, 939
AluI AGCT 4 cut(s) 325, 609, 726, 939
Alw26I GTCTC 1 cut(s) 274
AlwI GGATC 1 cut(s) 160
Aor13HI TCCGGA 1 cut(s) 348
AoxI GGCC 1 cut(s) 840
ApeKI GCWGC 1 cut(s) 609
ApoI RAATTY 1 cut(s) 456
AspS9I GGNCC 1 cut(s) 841
AsuHPI GGTGA 4 cut(s) 64, 388, 604, 961
AsuII TTCGAA 1 cut(s) 876
AxyI CCTNAGG 1 cut(s) 580
BanII GRGCYC 1 cut(s) 471
BbsI GAAGAC 1 cut(s) 548
BbvI GCAGC 1 cut(s) 596
BccI CCATC 1 cut(s) 910
BceAI ACGGC 1 cut(s) 190
BcgI CGANNNNNNTGC 2 cut(s) 837, 871
BcoDI GTCTC 1 cut(s) 274
BfaI CTAG 3 cut(s) 164, 473, 972
BfuAI ACCTGC 1 cut(s) 40
BisI GCNGC 1 cut(s) 610
BlsI GCNGC 1 cut(s) 611
BmgT120I GGNCC 1 cut(s) 841
BmiI GGNNCC 1 cut(s) 470
BmsI GCATC 1 cut(s) 894
BpiI GAAGAC 1 cut(s) 548
Bpu14I TTCGAA 1 cut(s) 876
BsaAI YACGTR 1 cut(s) 63
BsaJI CCNNGG 3 cut(s) 226, 732, 807
BsaWI WCCGGW 1 cut(s) 348
BsaXI ACNNNNNCTCC 4 cut(s) 280, 310, 376, 406
Bse1I ACTGG 1 cut(s) 968
Bse21I CCTNAGG 1 cut(s) 580
BseAI TCCGGA 1 cut(s) 348
BseDI CCNNGG 3 cut(s) 226, 732, 807
BseMII CTCAG 4 cut(s) 417, 594, 659, 708
BseNI ACTGG 1 cut(s) 968
BseRI GAGGAG 1 cut(s) 397
BseXI GCAGC 1 cut(s) 596
BseYI CCCAGC 1 cut(s) 96
BshFI GGCC 1 cut(s) 842
BsiSI CCGG 1 cut(s) 349
BsmAI GTCTC 1 cut(s) 274
BsmI GAATGC 1 cut(s) 783
BsnI GGCC 1 cut(s) 842
Bsp119I TTCGAA 1 cut(s) 876
Bsp1286I GDGCHC 1 cut(s) 471
Bsp13I TCCGGA 1 cut(s) 348
Bsp143I GATC 1 cut(s) 152
BspACI CCGC 2 cut(s) 545, 836
BspANI GGCC 1 cut(s) 842
BspCNI CTCAG 4 cut(s) 418, 593, 658, 709
BspEI TCCGGA 1 cut(s) 348
BspLI GGNNCC 1 cut(s) 470
BspMI ACCTGC 1 cut(s) 40
BspPI GGATC 1 cut(s) 160
BspT104I TTCGAA 1 cut(s) 876
BsrI ACTGG 1 cut(s) 968
BssECI CCNNGG 3 cut(s) 226, 732, 807
BssMI GATC 1 cut(s) 152
BssT1I CCWWGG 1 cut(s) 732
Bst4CI ACNGT 1 cut(s) 59
Bst6I CTCTTC 1 cut(s) 299
BstBAI YACGTR 1 cut(s) 63
BstBI TTCGAA 1 cut(s) 876
BstC8I GCNNGC 1 cut(s) 660
BstDEI CTNAG 4 cut(s) 426, 580, 645, 717
BstDSI CCRYGG 1 cut(s) 807
BstKTI GATC 1 cut(s) 155
BstMAI GTCTC 1 cut(s) 274
BstMBI GATC 1 cut(s) 152
BstNSI RCATGY 1 cut(s) 425
BstSNI TACGTA 1 cut(s) 63
BstV1I GCAGC 1 cut(s) 596
BstV2I GAAGAC 1 cut(s) 548
Bsu36I CCTNAGG 1 cut(s) 580
BsuRI GGCC 1 cut(s) 842
BtgI CCRYGG 1 cut(s) 807
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 3 cut(s) 18, 714, 961
BveI ACCTGC 1 cut(s) 40
Cac8I GCNNGC 1 cut(s) 660
Cfr13I GGNCC 1 cut(s) 841
CseI GACGC 1 cut(s) 446
Csp6I GTAC 1 cut(s) 60
CviAII CATG 3 cut(s) 422, 446, 692
CviQI GTAC 1 cut(s) 60
DdeI CTNAG 4 cut(s) 426, 580, 645, 717
DpnI GATC 1 cut(s) 154
DpnII GATC 1 cut(s) 152
Eam1104I CTCTTC 1 cut(s) 299
EarI CTCTTC 1 cut(s) 299
Eco105I TACGTA 1 cut(s) 63
Eco130I CCWWGG 1 cut(s) 732
Eco24I GRGCYC 1 cut(s) 471
Eco81I CCTNAGG 1 cut(s) 580
EcoT14I CCWWGG 1 cut(s) 732
EcoT38I GRGCYC 1 cut(s) 471
ErhI CCWWGG 1 cut(s) 732
FaeI CATG 3 cut(s) 425, 449, 695
FatI CATG 3 cut(s) 421, 445, 691
FauNDI CATATG 2 cut(s) 102, 891
Fnu4HI GCNGC 1 cut(s) 610
FriOI GRGCYC 1 cut(s) 471
Fsp4HI GCNGC 1 cut(s) 610
FspBI CTAG 3 cut(s) 164, 473, 972
GluI GCNGC 1 cut(s) 610
GsaI CCCAGC 1 cut(s) 100
HaeIII GGCC 1 cut(s) 842
HapII CCGG 1 cut(s) 349
HgaI GACGC 1 cut(s) 446
Hin1II CATG 3 cut(s) 425, 449, 695
HincII GTYRAC 1 cut(s) 587
HindII GTYRAC 1 cut(s) 587
HinfI GANTC 4 cut(s) 106, 191, 503, 553
HpaII CCGG 1 cut(s) 349
HphI GGTGA 4 cut(s) 64, 388, 604, 961
Hpy166II GTNNAC 4 cut(s) 55, 587, 595, 634
Hpy188I TCNGA 5 cut(s) 152, 213, 227, 244, 603
Hpy188III TCNNGA 4 cut(s) 349, 550, 563, 647
Hpy8I GTNNAC 4 cut(s) 55, 587, 595, 634
HpyAV CCTTC 2 cut(s) 651, 864
HpyCH4III ACNGT 1 cut(s) 59
HpyCH4IV ACGT 2 cut(s) 62, 115
HpyCH4V TGCA 4 cut(s) 462, 612, 781, 907
HpyF3I CTNAG 4 cut(s) 426, 580, 645, 717
HpySE526I ACGT 2 cut(s) 62, 115
Hsp92II CATG 3 cut(s) 425, 449, 695
Kpn2I TCCGGA 1 cut(s) 348
Kzo9I GATC 1 cut(s) 152
LmnI GCTCC 1 cut(s) 474
Lsp1109I GCAGC 1 cut(s) 596
LweI GCATC 1 cut(s) 894
MaeI CTAG 3 cut(s) 164, 473, 972
MaeII ACGT 2 cut(s) 62, 115
MaeIII GTNAC 1 cut(s) 67
MalI GATC 1 cut(s) 154
MboI GATC 1 cut(s) 152
MboII GAAGA 8 cut(s) 303, 313, 316, 505, 548, 551, 752, 967
MhlI GDGCHC 1 cut(s) 471
MluCI AATT 4 cut(s) 247, 432, 456, 980
MlyI GAGTC 2 cut(s) 497, 562
MroI TCCGGA 1 cut(s) 348
MseI TTAA 3 cut(s) 87, 282, 519
MslI CAYNNNNRTG 2 cut(s) 74, 894
MspI CCGG 1 cut(s) 349
Mva1269I GAATGC 1 cut(s) 783
NdeI CATATG 2 cut(s) 102, 891
NdeII GATC 1 cut(s) 152
NlaIII CATG 3 cut(s) 425, 449, 695
NlaIV GGNNCC 1 cut(s) 470
NmuCI GTSAC 1 cut(s) 67
NspI RCATGY 1 cut(s) 425
NspV TTCGAA 1 cut(s) 876
OliI CACNNNNGTG 1 cut(s) 74
PaqCI CACCTGC 1 cut(s) 40
PctI GAATGC 1 cut(s) 783
PfeI GAWTC 2 cut(s) 106, 191
PkrI GCNGC 1 cut(s) 611
PleI GAGTC 2 cut(s) 497, 561
PpsI GAGTC 2 cut(s) 497, 561
Ppu21I YACGTR 1 cut(s) 63
PspFI CCCAGC 1 cut(s) 96
PspN4I GGNNCC 1 cut(s) 470
PspPI GGNCC 1 cut(s) 841
RsaI GTAC 1 cut(s) 61
RsaNI GTAC 1 cut(s) 60
RseI CAYNNNNRTG 2 cut(s) 74, 894
SaqAI TTAA 3 cut(s) 87, 282, 519
SatI GCNGC 1 cut(s) 610
Sau3AI GATC 1 cut(s) 152
Sau96I GGNCC 1 cut(s) 841
SchI GAGTC 2 cut(s) 497, 562
SduI GDGCHC 1 cut(s) 471
SfaNI GCATC 1 cut(s) 894
SfuI TTCGAA 1 cut(s) 876
SmiMI CAYNNNNRTG 2 cut(s) 74, 894
SnaBI TACGTA 1 cut(s) 63
Sse9I AATT 4 cut(s) 247, 432, 456, 980
SsiI CCGC 2 cut(s) 545, 836
SspMI CTAG 3 cut(s) 164, 473, 972
StyI CCWWGG 1 cut(s) 732
TaaI ACNGT 1 cut(s) 59
TaiI ACGT 2 cut(s) 65, 118
TaqI TCGA 2 cut(s) 876, 941
TasI AATT 4 cut(s) 247, 432, 456, 980
TfiI GAWTC 2 cut(s) 106, 191
Tru1I TTAA 3 cut(s) 87, 282, 519
Tru9I TTAA 3 cut(s) 87, 282, 519
TscAI CASTG 3 cut(s) 18, 721, 968
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 1 cut(s) 609
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 4 cut(s) 119, 240, 585, 738
TspGWI ACGGA 1 cut(s) 796
TspRI CASTG 3 cut(s) 18, 721, 968
XapI RAATTY 1 cut(s) 456
XceI RCATGY 1 cut(s) 425
XspI CTAG 3 cut(s) 164, 473, 972
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.