Rh4DG174400

Jagunal, ER re-organisation during oogenesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0005333
Physical Location & Seq
Reverse (-)
34706172 .. 34708410
2239 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG174400.1

Sequence Viewer

Length: 660 bp
ATGCAAATCCGCAGCATCGCGCGGGGGCAATTCCTAACCCACAACTCTACCAAGCAAGGGCAGGACAGCGCAGCCCCAACTCCAGCGATTCCCAGCAGCATCCGTTGCTTACTCAGGAACCCAGACAAGAAGAAGAAGATGCAGCAGAGAAGATTAGCATCATCAGGGAGGCCTACTGGAACAGATGGCTCAGATTTCAACTACCGCATGGTTGTTGACTCTCGGTATCAAAAAGTAGCTGATGGAAAGTCTCGTCTCTACGCGCTTATTCTCACTCAGGCTGTCTTTCAGCTGATAGGAGTCCTATATACATTTCTTTTTACTTCCAAAGGGGAAGGTCCCGATGTGATTGCTATCTCTTCTATAGCTATTGGTTCAATTTCTTTGATACTTGGGGACTTGGGTCGAAGGCGTAGTCGAGTAACTTTGTTGAAAGTTTACATGGTTGCATCATCTATTGGAGTGCTTCTTTCCATTGCTTGTGTTGCCAAGGGGAATGTAACATTAGAGGTTTTCCAAACTCCCACTAGATGGGAAACACACAAGTTTGAACTTCTTGAGGCTGCTCGCACTGCAATTGGATTCTTGGTACAAATATTTACAGTGAGCACAATTACTTCTCTAATCAGTAACATGTCTCCACCGAAAAGAACCTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jagunal

Protein Analysis

219

Amino Acids

24.01

Weight (kDa)

10.46

Isoelectric Point (pI)

47.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jagunal PF07086 57 - 99 2.4e-06 Jagunal, ER re-organisation during oogenesis
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 531
AccII CGCG 3 cut(s) 20, 22, 263
AciI CCGC 3 cut(s) 10, 22, 205
AfaI GTAC 1 cut(s) 591
AfiI CCNNNNNNNGG 2 cut(s) 57, 531
AflIII ACRYGT 1 cut(s) 633
AgsI TTSAA 4 cut(s) 199, 378, 433, 551
AluBI AGCT 3 cut(s) 239, 292, 368
AluI AGCT 3 cut(s) 239, 292, 368
Alw21I GWGCWC 1 cut(s) 611
Alw26I GTCTC 3 cut(s) 255, 260, 642
AoxI GGCC 1 cut(s) 170
ApeKI GCWGC 5 cut(s) 12, 71, 96, 142, 563
ArsI GACNNNNNNTTYG 2 cut(s) 400, 432
AspLEI GCGC 3 cut(s) 22, 71, 265
AspS9I GGNCC 1 cut(s) 338
AvaII GGWCC 1 cut(s) 338
Bbv12I GWGCWC 1 cut(s) 611
BbvI GCAGC 5 cut(s) 24, 83, 108, 154, 550
BccI CCATC 3 cut(s) 179, 236, 525
BcgI CGANNNNNNTGC 2 cut(s) 332, 366
BcoDI GTCTC 3 cut(s) 255, 260, 642
BfaI CTAG 1 cut(s) 528
BfmI CTRYAG 1 cut(s) 363
BisI GCNGC 5 cut(s) 13, 72, 97, 143, 564
BlsI GCNGC 5 cut(s) 14, 73, 98, 144, 565
Bme18I GGWCC 1 cut(s) 338
BmgT120I GGNCC 1 cut(s) 338
BmiI GGNNCC 2 cut(s) 119, 340
BmsI GCATC 5 cut(s) 24, 108, 129, 167, 458
BoxI GACNNNNGTC 1 cut(s) 402
BpmI CTGGAG 1 cut(s) 66
BpuEI CTTGAG 1 cut(s) 578
BsaBI GATNNNNATC 2 cut(s) 157, 353
BsaJI CCNNGG 1 cut(s) 489
Bsc4I CCNNNNNNNGG 2 cut(s) 57, 531
Bse1I ACTGG 1 cut(s) 181
Bse3DI GCAATG 1 cut(s) 474
Bse8I GATNNNNATC 2 cut(s) 157, 353
BseDI CCNNGG 1 cut(s) 489
BseGI GGATG 1 cut(s) 99
BseJI GATNNNNATC 2 cut(s) 157, 353
BseLI CCNNNNNNNGG 2 cut(s) 57, 531
BseMI GCAATG 1 cut(s) 474
BseMII CTCAG 3 cut(s) 127, 204, 290
BseNI ACTGG 1 cut(s) 181
BseXI GCAGC 5 cut(s) 24, 83, 108, 154, 550
BseYI CCCAGC 1 cut(s) 92
Bsh1236I CGCG 3 cut(s) 20, 22, 263
BshFI GGCC 1 cut(s) 172
BsiHKAI GWGCWC 1 cut(s) 611
BslFI GGGAC 2 cut(s) 324, 410
BslI CCNNNNNNNGG 2 cut(s) 57, 531
BsmAI GTCTC 3 cut(s) 255, 260, 642
BsmBI CGTCTC 1 cut(s) 260
BsmFI GGGAC 2 cut(s) 324, 410
BsnI GGCC 1 cut(s) 172
Bsp1286I GDGCHC 1 cut(s) 611
BspACI CCGC 3 cut(s) 10, 22, 205
BspANI GGCC 1 cut(s) 172
BspCNI CTCAG 3 cut(s) 126, 203, 289
BspFNI CGCG 3 cut(s) 20, 22, 263
BspLI GGNNCC 2 cut(s) 119, 340
BsrDI GCAATG 1 cut(s) 474
BsrI ACTGG 1 cut(s) 181
BssECI CCNNGG 1 cut(s) 489
BssT1I CCWWGG 1 cut(s) 489
Bst4CI ACNGT 1 cut(s) 604
Bst6I CTCTTC 1 cut(s) 364
BstAPI GCANNNNNTGC 1 cut(s) 105
BstC8I GCNNGC 1 cut(s) 568
BstDEI CTNAG 4 cut(s) 113, 190, 276, 657
BstF5I GGATG 1 cut(s) 99
BstFNI CGCG 3 cut(s) 20, 22, 263
BstHHI GCGC 3 cut(s) 22, 71, 265
BstMAI GTCTC 3 cut(s) 255, 260, 642
BstMWI GCNNNNNNNGC 3 cut(s) 105, 485, 572
BstNSI RCATGY 1 cut(s) 637
BstPAI GACNNNNGTC 1 cut(s) 402
BstSFI CTRYAG 1 cut(s) 363
BstUI CGCG 3 cut(s) 20, 22, 263
BstV1I GCAGC 5 cut(s) 24, 83, 108, 154, 550
BsuRI GGCC 1 cut(s) 172
BtsCI GGATG 1 cut(s) 99
BtsI GCAGTG 1 cut(s) 570
BtsIMutI CAGTG 2 cut(s) 570, 609
Cac8I GCNNGC 1 cut(s) 568
CfoI GCGC 3 cut(s) 22, 71, 265
Cfr13I GGNCC 1 cut(s) 338
Csp6I GTAC 1 cut(s) 590
CviAII CATG 3 cut(s) 208, 442, 634
CviJI RGCY 8 cut(s) 74, 172, 189, 239, 281, 292, 368, 563
CviKI_1 RGCY 8 cut(s) 74, 172, 189, 239, 281, 292, 368, 563
CviQI GTAC 1 cut(s) 590
DdeI CTNAG 4 cut(s) 113, 190, 276, 657
Eam1104I CTCTTC 1 cut(s) 364
EarI CTCTTC 1 cut(s) 364
Eco130I CCWWGG 1 cut(s) 489
Eco147I AGGCCT 1 cut(s) 172
Eco47I GGWCC 1 cut(s) 338
EcoO109I RGGNCCY 1 cut(s) 338
EcoT14I CCWWGG 1 cut(s) 489
ErhI CCWWGG 1 cut(s) 489
Esp3I CGTCTC 1 cut(s) 260
FaeI CATG 3 cut(s) 211, 445, 637
FaiI YATR 6 cut(s) 209, 307, 309, 365, 443, 635
FalI AAGNNNNNCTT 1 cut(s) 640
FaqI GGGAC 2 cut(s) 324, 410
FatI CATG 3 cut(s) 207, 441, 633
FauI CCCGC 1 cut(s) 15
Fnu4HI GCNGC 5 cut(s) 13, 72, 97, 143, 564
FokI GGATG 1 cut(s) 86
Fsp4HI GCNGC 5 cut(s) 13, 72, 97, 143, 564
FspBI CTAG 1 cut(s) 528
GlaI GCGC 3 cut(s) 21, 70, 264
GluI GCNGC 5 cut(s) 13, 72, 97, 143, 564
GsaI CCCAGC 1 cut(s) 96
GsuI CTGGAG 1 cut(s) 66
HaeIII GGCC 1 cut(s) 172
HhaI GCGC 3 cut(s) 22, 71, 265
Hin1II CATG 3 cut(s) 211, 445, 637
Hin6I GCGC 3 cut(s) 20, 69, 263
HinP1I GCGC 3 cut(s) 20, 69, 263
HincII GTYRAC 1 cut(s) 217
HindII GTYRAC 1 cut(s) 217
HinfI GANTC 4 cut(s) 88, 218, 300, 582
Hpy166II GTNNAC 2 cut(s) 217, 439
Hpy188I TCNGA 1 cut(s) 193
Hpy188III TCNNGA 3 cut(s) 115, 341, 557
Hpy8I GTNNAC 2 cut(s) 217, 439
HpyAV CCTTC 2 cut(s) 329, 402
HpyCH4III ACNGT 1 cut(s) 604
HpyCH4V TGCA 4 cut(s) 4, 142, 449, 575
HpyF10VI GCNNNNNNNGC 3 cut(s) 105, 485, 572
HpyF3I CTNAG 4 cut(s) 113, 190, 276, 657
Hsp92II CATG 3 cut(s) 211, 445, 637
HspAI GCGC 3 cut(s) 20, 69, 263
LpnPI CCDG 8 cut(s) 47, 96, 100, 106, 135, 150, 162, 263
Lsp1109I GCAGC 5 cut(s) 24, 83, 108, 154, 550
LweI GCATC 5 cut(s) 24, 108, 129, 167, 458
MaeI CTAG 1 cut(s) 528
MaeIII GTNAC 3 cut(s) 421, 499, 629
MboII GAAGA 5 cut(s) 142, 145, 148, 162, 351
MfeI CAATTG 1 cut(s) 576
MhlI GDGCHC 1 cut(s) 611
MluCI AATT 4 cut(s) 29, 378, 576, 612
MlyI GAGTC 2 cut(s) 212, 309
MnlI CCTC 3 cut(s) 162, 502, 553
MspA1I CMGCKG 1 cut(s) 292
MunI CAATTG 1 cut(s) 576
MvnI CGCG 3 cut(s) 20, 22, 263
MwoI GCNNNNNNNGC 3 cut(s) 105, 485, 572
NlaIII CATG 3 cut(s) 211, 445, 637
NlaIV GGNNCC 2 cut(s) 119, 340
NspI RCATGY 1 cut(s) 637
PceI AGGCCT 1 cut(s) 172
PciI ACATGT 1 cut(s) 633
PfeI GAWTC 2 cut(s) 88, 582
PflMI CCANNNNNTGG 1 cut(s) 531
PkrI GCNGC 5 cut(s) 14, 73, 98, 144, 565
PleI GAGTC 2 cut(s) 212, 308
PpsI GAGTC 2 cut(s) 212, 308
PpuMI RGGWCCY 1 cut(s) 338
PscI ACATGT 1 cut(s) 633
PshAI GACNNNNGTC 1 cut(s) 402
Psp5II RGGWCCY 1 cut(s) 338
PspFI CCCAGC 1 cut(s) 92
PspN4I GGNNCC 2 cut(s) 119, 340
PspPI GGNCC 1 cut(s) 338
PspPPI RGGWCCY 1 cut(s) 338
PvuII CAGCTG 1 cut(s) 292
RsaI GTAC 1 cut(s) 591
RsaNI GTAC 1 cut(s) 590
SatI GCNGC 5 cut(s) 13, 72, 97, 143, 564
Sau96I GGNCC 1 cut(s) 338
SchI GAGTC 2 cut(s) 212, 309
SduI GDGCHC 1 cut(s) 611
SetI ASST 6 cut(s) 241, 294, 340, 370, 513, 656
SfaNI GCATC 5 cut(s) 24, 108, 129, 167, 458
SfcI CTRYAG 1 cut(s) 363
SinI GGWCC 1 cut(s) 338
SmlI CTYRAG 1 cut(s) 557
SmoI CTYRAG 1 cut(s) 557
Sse9I AATT 4 cut(s) 29, 378, 576, 612
SseBI AGGCCT 1 cut(s) 172
SsiI CCGC 3 cut(s) 10, 22, 205
SspI AATATT 1 cut(s) 597
SspMI CTAG 1 cut(s) 528
StuI AGGCCT 1 cut(s) 172
StyI CCWWGG 1 cut(s) 489
TaaI ACNGT 1 cut(s) 604
TaqI TCGA 2 cut(s) 406, 418
TasI AATT 4 cut(s) 29, 378, 576, 612
TfiI GAWTC 2 cut(s) 88, 582
TscAI CASTG 2 cut(s) 577, 609
TseI GCWGC 5 cut(s) 12, 71, 96, 142, 563
TspGWI ACGGA 1 cut(s) 92
TspRI CASTG 2 cut(s) 577, 609
Van91I CCANNNNNTGG 1 cut(s) 531
VpaK11BI GGWCC 1 cut(s) 338
XceI RCATGY 1 cut(s) 637
XspI CTAG 1 cut(s) 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.