Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005333

Physical Location & Seq

Genomic Coordinates Forward (+)

18950322 .. 18950994

Gene Structure 673 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0119500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGAACCGTCGAAAGAACAAAAAGAAGAAGAAGAAGAGATTCAAGTTCGAGAAGTTTTGGTTGAGGGAGGAGACTTGTCGTAAGGTCGTTAAAAGGGGATGGGAAGGTGTTACGGGGAGTGATCCATTCCTGAAGTTGTGGAATAAAAATCAACATACGAGGAAGTTACTAGAAGATTGGAGTTCTGAGCAGTTTGGGTCTTTGACTAAAGAGATTGAGTTGACCCGTCCTCAACTGGCCATATTTTTTGATGACTCCCCATCAACACCATTGGATGGTGATCTCAACACACAGTTTTTTCATCAAAGGGCCTCTAATAGAAGGAGGAAGAACTCTCTGGTGGAGCTCTATGATAGTAATGGGGTTTGGTGTACAGCGGATGACGACATGGAAAAGGTGGTGCTTAATTACTTCCAAACATTATTTTCTTCTTCCAATCCTTTTGGGTTCCAAAATATTCTAGAAACCCTAGAACCTGTCATCACAAATGAGCAAAACGCTATGTTGACACGAAGGTTGGATGAGGATGAGATCTATGTAGCATTAAAAGCAATGCACCCTTCGAAAGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Jagunal

Protein Analysis

190

Amino Acids

22.47

Weight (kDa)

9.3

Isoelectric Point (pI)

58.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51510
fragaria_vesca	FvH4_4g13180 FvH4_4g13180 FvH4_4g13180
malus_domestica	MD07G1255100.v1.1
prunus_persica	Prupe.2G278900_v2.0.a1 Prupe.2G279400_v2.0.a1
pyrus_communis	pycom01g19500 pycom07g22830
rosa_chinensis	RchiOBHm_Chr4g0409771 RchiOBHm_Chr4g0413311
rosa_laevigata	RLG00000008225
rosa_multiflora	Rmu_sc0009573.1_g000005 Rmu_sc0009860.1_g000004
rosa_roxburghii	Rroxscaffold_5G00357240
rosa_rugosa	Rorug04G0119500 Rorug04G0119600 Rorug04G0119700 Rorug04G0119800 Rorug04G0119900
rosa_samantha	Rh2BG188800 Rh4AG179300 Rh4BG178400 Rh4CG189900 Rh4DG174400 Rh5AG393900 Rh6DG341500 Rh7BG185600
rosa_wichuraiana	Rw4G014900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	275
AciI	CCGC	1 cut(s)	377
AclWI	GGATC	1 cut(s)	116
AcoI	YGGCCR	1 cut(s)	237
AcuI	CTGAAG	1 cut(s)	152
AfaI	GTAC	1 cut(s)	373
AfiI	CCNNNNNNNGG	1 cut(s)	275
AgsI	TTSAA	1 cut(s)	43
AluBI	AGCT	1 cut(s)	346
AluI	AGCT	1 cut(s)	346
Alw21I	GWGCWC	1 cut(s)	348
Alw26I	GTCTC	1 cut(s)	65
AlwI	GGATC	1 cut(s)	116
AoxI	GGCC	2 cut(s)	237, 309
Asp700I	GAANNNNTTC	1 cut(s)	38
AspS9I	GGNCC	1 cut(s)	309
AsuHPI	GGTGA	1 cut(s)	290
AsuII	TTCGAA	1 cut(s)	563
BalI	TGGCCA	1 cut(s)	239
BanII	GRGCYC	1 cut(s)	348
Bbv12I	GWGCWC	1 cut(s)	348
BccI	CCATC	3 cut(s)	93, 268, 269
BcoDI	GTCTC	1 cut(s)	65
BfaI	CTAG	4 cut(s)	170, 461, 470, 571
BglII	AGATCT	1 cut(s)	531
BmgT120I	GGNCC	1 cut(s)	309
BmiI	GGNNCC	1 cut(s)	449
Bpu14I	TTCGAA	1 cut(s)	563
BsaBI	GATNNNNATC	1 cut(s)	279
Bsc4I	CCNNNNNNNGG	1 cut(s)	275
Bse1I	ACTGG	1 cut(s)	240
Bse3DI	GCAATG	1 cut(s)	558
Bse8I	GATNNNNATC	1 cut(s)	279
BseGI	GGATG	5 cut(s)	104, 280, 385, 526, 532
BseJI	GATNNNNATC	1 cut(s)	279
BseLI	CCNNNNNNNGG	1 cut(s)	275
BseMI	GCAATG	1 cut(s)	558
BseMII	CTCAG	1 cut(s)	177
BseNI	ACTGG	1 cut(s)	240
BseRI	GAGGAG	1 cut(s)	83
BshFI	GGCC	2 cut(s)	239, 311
BsiHKAI	GWGCWC	1 cut(s)	348
BslI	CCNNNNNNNGG	1 cut(s)	275
BsmAI	GTCTC	1 cut(s)	65
BsnI	GGCC	2 cut(s)	239, 311
Bsp119I	TTCGAA	1 cut(s)	563
Bsp1286I	GDGCHC	1 cut(s)	348
Bsp1407I	TGTACA	1 cut(s)	371
Bsp143I	GATC	3 cut(s)	121, 280, 531
BspACI	CCGC	1 cut(s)	377
BspANI	GGCC	2 cut(s)	239, 311
BspCNI	CTCAG	1 cut(s)	178
BspLI	GGNNCC	1 cut(s)	449
BspPI	GGATC	1 cut(s)	116
BspT104I	TTCGAA	1 cut(s)	563
BsrDI	GCAATG	1 cut(s)	558
BsrGI	TGTACA	1 cut(s)	371
BsrI	ACTGG	1 cut(s)	240
BssMI	GATC	3 cut(s)	121, 280, 531
Bst4CI	ACNGT	2 cut(s)	8, 294
Bst6I	CTCTTC	1 cut(s)	29
BstAUI	TGTACA	1 cut(s)	371
BstBI	TTCGAA	1 cut(s)	563
BstDEI	CTNAG	1 cut(s)	186
BstF5I	GGATG	5 cut(s)	104, 280, 385, 526, 532
BstKTI	GATC	3 cut(s)	124, 283, 534
BstMAI	GTCTC	1 cut(s)	65
BstMBI	GATC	3 cut(s)	121, 280, 531
BstMWI	GCNNNNNNNGC	1 cut(s)	548
BstX2I	RGATCY	1 cut(s)	531
BstYI	RGATCY	1 cut(s)	531
BsuRI	GGCC	2 cut(s)	239, 311
BtsCI	GGATG	5 cut(s)	104, 280, 385, 526, 532
Cfr13I	GGNCC	1 cut(s)	309
Csp6I	GTAC	1 cut(s)	372
CviAII	CATG	1 cut(s)	388
CviJI	RGCY	4 cut(s)	239, 311, 346, 569
CviKI_1	RGCY	4 cut(s)	239, 311, 346, 569
CviQI	GTAC	1 cut(s)	372
DdeI	CTNAG	1 cut(s)	186
DpnI	GATC	3 cut(s)	123, 282, 533
DpnII	GATC	3 cut(s)	121, 280, 531
EaeI	YGGCCR	1 cut(s)	237
Eam1104I	CTCTTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	29
Ecl136II	GAGCTC	1 cut(s)	346
Eco24I	GRGCYC	1 cut(s)	348
Eco53kI	GAGCTC	1 cut(s)	346
Eco57I	CTGAAG	1 cut(s)	152
EcoICRI	GAGCTC	1 cut(s)	346
EcoO109I	RGGNCCY	1 cut(s)	309
EcoT38I	GRGCYC	1 cut(s)	348
FaeI	CATG	1 cut(s)	391
FaiI	YATR	6 cut(s)	156, 242, 351, 389, 503, 537
FatI	CATG	1 cut(s)	387
FokI	GGATG	5 cut(s)	111, 287, 392, 533, 539
FriOI	GRGCYC	1 cut(s)	348
FspBI	CTAG	4 cut(s)	170, 461, 470, 571
HaeIII	GGCC	2 cut(s)	239, 311
Hin1II	CATG	1 cut(s)	391
HincII	GTYRAC	2 cut(s)	222, 507
HindII	GTYRAC	2 cut(s)	222, 507
HinfI	GANTC	2 cut(s)	39, 254
HphI	GGTGA	1 cut(s)	290
Hpy166II	GTNNAC	3 cut(s)	222, 372, 507
Hpy188I	TCNGA	1 cut(s)	187
Hpy188III	TCNNGA	3 cut(s)	49, 130, 461
Hpy8I	GTNNAC	3 cut(s)	222, 372, 507
Hpy99I	CGWCG	1 cut(s)	12
HpyAV	CCTTC	4 cut(s)	98, 315, 507, 570
HpyCH4III	ACNGT	2 cut(s)	8, 294
HpyCH4V	TGCA	1 cut(s)	556
HpyF10VI	GCNNNNNNNGC	1 cut(s)	548
HpyF3I	CTNAG	1 cut(s)	186
Hsp92II	CATG	1 cut(s)	391
Kzo9I	GATC	3 cut(s)	121, 280, 531
LmnI	GCTCC	1 cut(s)	343
LpnPI	CCDG	4 cut(s)	143, 221, 323, 489
MaeI	CTAG	4 cut(s)	170, 461, 470, 571
MaeIII	GTNAC	2 cut(s)	109, 165
MalI	GATC	3 cut(s)	123, 282, 533
MboI	GATC	3 cut(s)	121, 280, 531
MboII	GAAGA	8 cut(s)	37, 40, 43, 46, 185, 340, 420, 423
MflI	RGATCY	1 cut(s)	531
MhlI	GDGCHC	1 cut(s)	348
MlsI	TGGCCA	1 cut(s)	239
MluCI	AATT	1 cut(s)	406
MluNI	TGGCCA	1 cut(s)	239
MlyI	GAGTC	1 cut(s)	248
MmeI	TCCRAC	1 cut(s)	498
MnlI	CCTC	7 cut(s)	57, 61, 153, 240, 318, 322, 517
Mox20I	TGGCCA	1 cut(s)	239
MroXI	GAANNNNTTC	1 cut(s)	38
MscI	TGGCCA	1 cut(s)	239
MseI	TTAA	3 cut(s)	90, 405, 545
Msp20I	TGGCCA	1 cut(s)	239
MspA1I	CMGCKG	1 cut(s)	377
MwoI	GCNNNNNNNGC	1 cut(s)	548
NdeII	GATC	3 cut(s)	121, 280, 531
NlaIII	CATG	1 cut(s)	391
NlaIV	GGNNCC	1 cut(s)	449
NspV	TTCGAA	1 cut(s)	563
PdmI	GAANNNNTTC	1 cut(s)	38
PfeI	GAWTC	1 cut(s)	39
PflMI	CCANNNNNTGG	1 cut(s)	275
PleI	GAGTC	1 cut(s)	248
PpsI	GAGTC	1 cut(s)	248
Psp124BI	GAGCTC	1 cut(s)	348
PspN4I	GGNNCC	1 cut(s)	449
PspPI	GGNCC	1 cut(s)	309
PsuI	RGATCY	1 cut(s)	531
RsaI	GTAC	1 cut(s)	373
RsaNI	GTAC	1 cut(s)	372
SacI	GAGCTC	1 cut(s)	348
SaqAI	TTAA	3 cut(s)	90, 405, 545
Sau3AI	GATC	3 cut(s)	121, 280, 531
Sau96I	GGNCC	1 cut(s)	309
SchI	GAGTC	1 cut(s)	248
SduI	GDGCHC	1 cut(s)	348
SetI	ASST	6 cut(s)	87, 109, 348, 399, 478, 518
SfuI	TTCGAA	1 cut(s)	563
Sse9I	AATT	1 cut(s)	406
SsiI	CCGC	1 cut(s)	377
SspI	AATATT	1 cut(s)	457
SspMI	CTAG	4 cut(s)	170, 461, 470, 571
SstI	GAGCTC	1 cut(s)	348
TaaI	ACNGT	2 cut(s)	8, 294
TaqI	TCGA	3 cut(s)	10, 48, 563
TasI	AATT	1 cut(s)	406
TatI	WGTACW	1 cut(s)	371
TfiI	GAWTC	1 cut(s)	39
Tru1I	TTAA	3 cut(s)	90, 405, 545
Tru9I	TTAA	3 cut(s)	90, 405, 545
TspDTI	ATGAA	2 cut(s)	17, 290
Van91I	CCANNNNNTGG	1 cut(s)	275
XbaI	TCTAGA	1 cut(s)	460
XmnI	GAANNNNTTC	1 cut(s)	38
XspI	CTAG	4 cut(s)	170, 461, 470, 571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.