Rh4AG179300

Jagunal, ER re-organisation during oogenesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0005333
Physical Location & Seq
Reverse (-)
44903424 .. 44916596
13173 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG179300.1

Sequence Viewer

Length: 891 bp
ATGGCCAAGGCCAATGTCGCCTCTTACTTTTCAGCAATTCCGGAAATGCCCCCATCTTCTCTTCTTCAGACCGAAGCAGTAGTCGTCGATATCCATCTGGTTTCTCTGTGCACAAAACCCATCCCTAACACTCAGAGCAGTGAGAGCACCAAACCGTCAGATATTCATCTCTTCATCTTTTCCATTCACAACAAAAGAGTCTTTGGGATGAAAAGCCTCACAATAGTTGGTGCATCTTTCGATAACTTTGATTCCAGGAGGATACGGACCCACAACTCTACCAAGCAAGGGCAGGACAGCGCAGCCCCAACTCCAGCGATTCCCAGCAGCAACCGTTGCTTATTCAGGAACCCAGACAAGAAGAAGAAGATGCAGCAGAGAAGATTAGCATCATCAGGGAGGCCTACTGGAACAGATGGCTCAGATTTCAACTACCGCATGGTTGTTGACTCTCGGTATCAAAAAGTAGCTGATGGAAAATCTCGTCTCTACGCGCTTATTCTCACTCAGGCTGTCTTTCAGCTGATAGGAGTCCTATATACATTTCTTTTTACTTCCAAAGGGGAAGGTCCCGATGTGATTGCTATCTCTTCTATAGCTATTGGTTCAATTTCTTTGATACTTGGGGACTTGGGTCGAAGGCGTAGTCGAGTAACTTTGTTGAAAGTTTACATGGTTGCATCATCTATTGGAGTGCTTCTTTCCATTGCTTGTGTTGCCAAGGGGAATGTAACATTAGAGGTTTTCCAAACTCCCACTAGATGGGAAACACACAAGTTTGAACTTCTTGAGGCTGCTCGCACTGCAATTGGATTCTTGGTACAAATATTTACAGTGAGCACAATTACTTCTCTAATCAGTAACATGTCCCCACCGAAAAGAACCTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jagunal

Protein Analysis

296

Amino Acids

32.46

Weight (kDa)

10.04

Isoelectric Point (pI)

52.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jagunal PF07086 134 - 176 3.8e-06 Jagunal, ER re-organisation during oogenesis
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 762
AccII CGCG 1 cut(s) 494
AccIII TCCGGA 1 cut(s) 40
AciI CCGC 1 cut(s) 436
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 50
AfaI GTAC 1 cut(s) 822
AfiI CCNNNNNNNGG 2 cut(s) 288, 762
AflIII ACRYGT 1 cut(s) 864
AgsI TTSAA 4 cut(s) 430, 609, 664, 782
AjnI CCWGG 1 cut(s) 254
AluBI AGCT 3 cut(s) 470, 523, 599
AluI AGCT 3 cut(s) 470, 523, 599
Alw21I GWGCWC 3 cut(s) 113, 149, 842
Alw26I GTCTC 1 cut(s) 491
Alw44I GTGCAC 1 cut(s) 109
Aor13HI TCCGGA 1 cut(s) 40
AoxI GGCC 3 cut(s) 3, 9, 401
ApaLI GTGCAC 1 cut(s) 109
ApeKI GCWGC 4 cut(s) 302, 327, 373, 794
ArsI GACNNNNNNTTYG 4 cut(s) 66, 98, 631, 663
AspLEI GCGC 2 cut(s) 302, 496
AspS9I GGNCC 2 cut(s) 267, 569
AvaII GGWCC 2 cut(s) 267, 569
BaeGI GKGCMC 1 cut(s) 113
BalI TGGCCA 1 cut(s) 5
Bbv12I GWGCWC 3 cut(s) 113, 149, 842
BbvI GCAGC 4 cut(s) 314, 339, 385, 781
BccI CCATC 6 cut(s) 61, 102, 128, 410, 467, 756
BcgI CGANNNNNNTGC 2 cut(s) 563, 597
BciT130I CCWGG 1 cut(s) 256
BciVI GTATCC 1 cut(s) 255
BcoDI GTCTC 1 cut(s) 491
BfaI CTAG 1 cut(s) 759
BfmI CTRYAG 1 cut(s) 594
BfuI GTATCC 1 cut(s) 255
BisI GCNGC 4 cut(s) 303, 328, 374, 795
BlsI GCNGC 4 cut(s) 304, 329, 375, 796
Bme1390I CCNGG 1 cut(s) 256
Bme18I GGWCC 2 cut(s) 267, 569
BmgT120I GGNCC 2 cut(s) 267, 569
BmiI GGNNCC 3 cut(s) 269, 350, 571
BmrFI CCNGG 1 cut(s) 256
BmsI GCATC 4 cut(s) 242, 360, 398, 689
BoxI GACNNNNGTC 1 cut(s) 633
BpmI CTGGAG 1 cut(s) 297
BpuEI CTTGAG 1 cut(s) 809
BsaBI GATNNNNATC 4 cut(s) 93, 165, 388, 584
BsaJI CCNNGG 2 cut(s) 6, 720
BsaWI WCCGGW 1 cut(s) 40
Bsc4I CCNNNNNNNGG 2 cut(s) 288, 762
Bse1I ACTGG 1 cut(s) 412
Bse3DI GCAATG 1 cut(s) 705
Bse8I GATNNNNATC 4 cut(s) 93, 165, 388, 584
BseAI TCCGGA 1 cut(s) 40
BseBI CCWGG 1 cut(s) 256
BseDI CCNNGG 2 cut(s) 6, 720
BseGI GGATG 2 cut(s) 120, 213
BseJI GATNNNNATC 4 cut(s) 93, 165, 388, 584
BseLI CCNNNNNNNGG 2 cut(s) 288, 762
BseMI GCAATG 1 cut(s) 705
BseMII CTCAG 3 cut(s) 146, 435, 521
BseNI ACTGG 1 cut(s) 412
BseSI GKGCMC 1 cut(s) 113
BseXI GCAGC 4 cut(s) 314, 339, 385, 781
BseYI CCCAGC 1 cut(s) 323
Bsh1236I CGCG 1 cut(s) 494
BshFI GGCC 3 cut(s) 5, 11, 403
BsiHKAI GWGCWC 3 cut(s) 113, 149, 842
BsiSI CCGG 1 cut(s) 41
BslFI GGGAC 3 cut(s) 555, 641, 853
BslI CCNNNNNNNGG 2 cut(s) 288, 762
BsmAI GTCTC 1 cut(s) 491
BsmBI CGTCTC 1 cut(s) 491
BsmFI GGGAC 3 cut(s) 555, 641, 853
BsnI GGCC 3 cut(s) 5, 11, 403
Bsp1286I GDGCHC 3 cut(s) 113, 149, 842
Bsp13I TCCGGA 1 cut(s) 40
BspACI CCGC 1 cut(s) 436
BspANI GGCC 3 cut(s) 5, 11, 403
BspCNI CTCAG 3 cut(s) 145, 434, 520
BspEI TCCGGA 1 cut(s) 40
BspFNI CGCG 1 cut(s) 494
BspLI GGNNCC 3 cut(s) 269, 350, 571
BsrDI GCAATG 1 cut(s) 705
BsrI ACTGG 1 cut(s) 412
BssECI CCNNGG 2 cut(s) 6, 720
BssT1I CCWWGG 2 cut(s) 6, 720
Bst2UI CCWGG 1 cut(s) 256
Bst4CI ACNGT 3 cut(s) 156, 335, 835
Bst6I CTCTTC 3 cut(s) 66, 176, 595
BstAPI GCANNNNNTGC 1 cut(s) 336
BstC8I GCNNGC 1 cut(s) 799
BstDEI CTNAG 4 cut(s) 132, 421, 507, 888
BstF5I GGATG 2 cut(s) 120, 213
BstFNI CGCG 1 cut(s) 494
BstHHI GCGC 2 cut(s) 302, 496
BstMAI GTCTC 1 cut(s) 491
BstMWI GCNNNNNNNGC 5 cut(s) 17, 144, 336, 716, 803
BstNI CCWGG 1 cut(s) 256
BstNSI RCATGY 1 cut(s) 868
BstPAI GACNNNNGTC 1 cut(s) 633
BstSCI CCNGG 1 cut(s) 254
BstSFI CTRYAG 1 cut(s) 594
BstSLI GKGCMC 1 cut(s) 113
BstUI CGCG 1 cut(s) 494
BstV1I GCAGC 4 cut(s) 314, 339, 385, 781
BsuI GTATCC 1 cut(s) 255
BsuRI GGCC 3 cut(s) 5, 11, 403
BtsCI GGATG 2 cut(s) 120, 213
BtsI GCAGTG 2 cut(s) 145, 801
BtsIMutI CAGTG 3 cut(s) 145, 801, 840
Cac8I GCNNGC 1 cut(s) 799
CfoI GCGC 2 cut(s) 302, 496
Cfr13I GGNCC 2 cut(s) 267, 569
Csp6I GTAC 1 cut(s) 821
CviAII CATG 3 cut(s) 439, 673, 865
CviQI GTAC 1 cut(s) 821
DdeI CTNAG 4 cut(s) 132, 421, 507, 888
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 66, 176, 595
EarI CTCTTC 3 cut(s) 66, 176, 595
Eco130I CCWWGG 2 cut(s) 6, 720
Eco147I AGGCCT 1 cut(s) 403
Eco32I GATATC 1 cut(s) 91
Eco47I GGWCC 2 cut(s) 267, 569
Eco57I CTGAAG 1 cut(s) 50
EcoO109I RGGNCCY 1 cut(s) 569
EcoRII CCWGG 1 cut(s) 254
EcoRV GATATC 1 cut(s) 91
EcoT14I CCWWGG 2 cut(s) 6, 720
ErhI CCWWGG 2 cut(s) 6, 720
Esp3I CGTCTC 1 cut(s) 491
FaeI CATG 3 cut(s) 442, 676, 868
FaiI YATR 6 cut(s) 440, 538, 540, 596, 674, 866
FalI AAGNNNNNCTT 1 cut(s) 871
FaqI GGGAC 3 cut(s) 555, 641, 853
FatI CATG 3 cut(s) 438, 672, 864
Fnu4HI GCNGC 4 cut(s) 303, 328, 374, 795
FokI GGATG 2 cut(s) 107, 220
Fsp4HI GCNGC 4 cut(s) 303, 328, 374, 795
FspBI CTAG 1 cut(s) 759
GlaI GCGC 2 cut(s) 301, 495
GluI GCNGC 4 cut(s) 303, 328, 374, 795
GsaI CCCAGC 1 cut(s) 327
GsuI CTGGAG 1 cut(s) 297
HaeIII GGCC 3 cut(s) 5, 11, 403
HapII CCGG 1 cut(s) 41
HhaI GCGC 2 cut(s) 302, 496
Hin1II CATG 3 cut(s) 442, 676, 868
Hin6I GCGC 2 cut(s) 300, 494
HinP1I GCGC 2 cut(s) 300, 494
HincII GTYRAC 1 cut(s) 448
HindII GTYRAC 1 cut(s) 448
HinfI GANTC 6 cut(s) 198, 251, 319, 449, 531, 813
HpaII CCGG 1 cut(s) 41
Hpy166II GTNNAC 3 cut(s) 111, 448, 670
Hpy188I TCNGA 4 cut(s) 69, 135, 160, 424
Hpy188III TCNNGA 4 cut(s) 41, 346, 572, 788
Hpy8I GTNNAC 3 cut(s) 111, 448, 670
Hpy99I CGWCG 1 cut(s) 89
HpyAV CCTTC 2 cut(s) 560, 633
HpyCH4III ACNGT 3 cut(s) 156, 335, 835
HpyCH4V TGCA 5 cut(s) 111, 233, 373, 680, 806
HpyF10VI GCNNNNNNNGC 5 cut(s) 17, 144, 336, 716, 803
HpyF3I CTNAG 4 cut(s) 132, 421, 507, 888
Hsp92II CATG 3 cut(s) 442, 676, 868
HspAI GCGC 2 cut(s) 300, 494
Kpn2I TCCGGA 1 cut(s) 40
Lsp1109I GCAGC 4 cut(s) 314, 339, 385, 781
LweI GCATC 4 cut(s) 242, 360, 398, 689
MaeI CTAG 1 cut(s) 759
MaeIII GTNAC 3 cut(s) 652, 730, 860
MboII GAAGA 9 cut(s) 48, 53, 56, 163, 373, 376, 379, 393, 582
MfeI CAATTG 1 cut(s) 807
MhlI GDGCHC 3 cut(s) 113, 149, 842
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 36, 609, 807, 843
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 207, 443, 540
MnlI CCTC 6 cut(s) 31, 227, 252, 393, 733, 784
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 40
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 523
MspI CCGG 1 cut(s) 41
MspR9I CCNGG 1 cut(s) 256
MunI CAATTG 1 cut(s) 807
MvaI CCWGG 1 cut(s) 256
MvnI CGCG 1 cut(s) 494
MwoI GCNNNNNNNGC 5 cut(s) 17, 144, 336, 716, 803
NlaIII CATG 3 cut(s) 442, 676, 868
NlaIV GGNNCC 3 cut(s) 269, 350, 571
NspI RCATGY 1 cut(s) 868
PceI AGGCCT 1 cut(s) 403
PciI ACATGT 1 cut(s) 864
PfeI GAWTC 3 cut(s) 251, 319, 813
PflMI CCANNNNNTGG 1 cut(s) 762
PfoI TCCNGGA 1 cut(s) 254
PkrI GCNGC 4 cut(s) 304, 329, 375, 796
PleI GAGTC 3 cut(s) 206, 443, 539
PpsI GAGTC 3 cut(s) 206, 443, 539
PpuMI RGGWCCY 1 cut(s) 569
PscI ACATGT 1 cut(s) 864
PshAI GACNNNNGTC 1 cut(s) 633
Psp5II RGGWCCY 1 cut(s) 569
Psp6I CCWGG 1 cut(s) 254
PspFI CCCAGC 1 cut(s) 323
PspGI CCWGG 1 cut(s) 254
PspN4I GGNNCC 3 cut(s) 269, 350, 571
PspPI GGNCC 2 cut(s) 267, 569
PspPPI RGGWCCY 1 cut(s) 569
PvuII CAGCTG 1 cut(s) 523
RsaI GTAC 1 cut(s) 822
RsaNI GTAC 1 cut(s) 821
SatI GCNGC 4 cut(s) 303, 328, 374, 795
Sau96I GGNCC 2 cut(s) 267, 569
SchI GAGTC 3 cut(s) 207, 443, 540
ScrFI CCNGG 1 cut(s) 256
SduI GDGCHC 3 cut(s) 113, 149, 842
SetI ASST 6 cut(s) 472, 525, 571, 601, 744, 887
SfaNI GCATC 4 cut(s) 242, 360, 398, 689
SfcI CTRYAG 1 cut(s) 594
SinI GGWCC 2 cut(s) 267, 569
SmlI CTYRAG 1 cut(s) 788
SmoI CTYRAG 1 cut(s) 788
Sse9I AATT 4 cut(s) 36, 609, 807, 843
SseBI AGGCCT 1 cut(s) 403
SsiI CCGC 1 cut(s) 436
SspI AATATT 1 cut(s) 828
SspMI CTAG 1 cut(s) 759
StuI AGGCCT 1 cut(s) 403
StyD4I CCNGG 1 cut(s) 254
StyI CCWWGG 2 cut(s) 6, 720
TaaI ACNGT 3 cut(s) 156, 335, 835
TaqI TCGA 4 cut(s) 87, 240, 637, 649
TaqII GACCGA 1 cut(s) 86
TasI AATT 4 cut(s) 36, 609, 807, 843
TfiI GAWTC 3 cut(s) 251, 319, 813
TscAI CASTG 3 cut(s) 145, 808, 840
TseI GCWGC 4 cut(s) 302, 327, 373, 794
TspDTI ATGAA 3 cut(s) 155, 163, 224
TspGWI ACGGA 1 cut(s) 280
TspRI CASTG 3 cut(s) 145, 808, 840
Van91I CCANNNNNTGG 1 cut(s) 762
VneI GTGCAC 1 cut(s) 109
VpaK11BI GGWCC 2 cut(s) 267, 569
XceI RCATGY 1 cut(s) 868
XspI CTAG 1 cut(s) 759
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.