Rroxscaffold_5G00357240

Jagunal, ER re-organisation during oogenesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0005333
Physical Location & Seq
Reverse (-)
36828372 .. 36834135
5764 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00357240.1

Sequence Viewer

Length: 522 bp
ATGCAGCAGAGACGATTAGCATCATCAGGGAGGCCTACTGGAACAGATGGCTCAGATTTCAACTACCGCATGGTTGTTGACTCTCGGTATCAAAAAGTAGCTGATGGAAAATCTCGTCTCTATGCGCTTATTCTCACTCAGGCTGTCTTTCAGCTGATAGGAGTCCTATATACATTTCTTTTTACTTCCAAAGGGGAAGGTCCCGATGTGATTGCTATCTCTTCTATAGCTATTGGTTCAATTTCTTTGATACTTGGGGACTTGGGTCGAAGGCGTAGTCGAGTAACTTTGTTGAAAGTTTACATGGTTGCATCATCTATTGGAGTGCTTCTTTCCATTGCTTGTGTTGCCAAGGGGAATGTAACATTAGAGGTTTTCCAAACTCCCACTAGATGGGAAACGCACAAGTTTGAACTTCTTGAGGCCGCTCGCACTGCAATTGGATTCCTGGTACAAATATTTACAGTGAGCACAATTACTTCTCTAATCAGTAACATGTCTCCACCGAAAAGAACCTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jagunal

Protein Analysis

173

Amino Acids

18.94

Weight (kDa)

10.13

Isoelectric Point (pI)

42.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jagunal PF07086 11 - 53 1.5e-06 Jagunal, ER re-organisation during oogenesis
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 393
AccBSI CCGCTC 1 cut(s) 428
AciI CCGC 2 cut(s) 67, 426
AfaI GTAC 1 cut(s) 453
AfiI CCNNNNNNNGG 1 cut(s) 393
AflIII ACRYGT 1 cut(s) 495
AgsI TTSAA 4 cut(s) 61, 240, 295, 413
AjnI CCWGG 1 cut(s) 447
AluBI AGCT 3 cut(s) 101, 154, 230
AluI AGCT 3 cut(s) 101, 154, 230
Alw21I GWGCWC 1 cut(s) 473
Alw26I GTCTC 3 cut(s) 4, 122, 504
AoxI GGCC 2 cut(s) 32, 423
ApeKI GCWGC 1 cut(s) 4
ArsI GACNNNNNNTTYG 2 cut(s) 262, 294
AspLEI GCGC 1 cut(s) 127
AspS9I GGNCC 1 cut(s) 200
AvaII GGWCC 1 cut(s) 200
Bbv12I GWGCWC 1 cut(s) 473
BbvI GCAGC 1 cut(s) 16
BccI CCATC 3 cut(s) 41, 98, 387
BcgI CGANNNNNNTGC 2 cut(s) 194, 228
BciT130I CCWGG 1 cut(s) 449
BcoDI GTCTC 3 cut(s) 4, 122, 504
BfaI CTAG 1 cut(s) 390
BfmI CTRYAG 1 cut(s) 225
BisI GCNGC 2 cut(s) 5, 426
BlsI GCNGC 2 cut(s) 6, 427
Bme1390I CCNGG 1 cut(s) 449
Bme18I GGWCC 1 cut(s) 200
BmgT120I GGNCC 1 cut(s) 200
BmiI GGNNCC 1 cut(s) 202
BmrFI CCNGG 1 cut(s) 449
BmsI GCATC 2 cut(s) 29, 320
BoxI GACNNNNGTC 1 cut(s) 264
BpuEI CTTGAG 1 cut(s) 440
BsaBI GATNNNNATC 2 cut(s) 19, 215
BsaJI CCNNGG 1 cut(s) 351
Bsc4I CCNNNNNNNGG 1 cut(s) 393
Bse1I ACTGG 1 cut(s) 43
Bse3DI GCAATG 1 cut(s) 336
Bse8I GATNNNNATC 2 cut(s) 19, 215
BseBI CCWGG 1 cut(s) 449
BseDI CCNNGG 1 cut(s) 351
BseJI GATNNNNATC 2 cut(s) 19, 215
BseLI CCNNNNNNNGG 1 cut(s) 393
BseMI GCAATG 1 cut(s) 336
BseMII CTCAG 2 cut(s) 66, 152
BseNI ACTGG 1 cut(s) 43
BseXI GCAGC 1 cut(s) 16
BshFI GGCC 2 cut(s) 34, 425
BsiHKAI GWGCWC 1 cut(s) 473
BslFI GGGAC 2 cut(s) 186, 272
BslI CCNNNNNNNGG 1 cut(s) 393
BsmAI GTCTC 3 cut(s) 4, 122, 504
BsmBI CGTCTC 2 cut(s) 4, 122
BsmFI GGGAC 2 cut(s) 186, 272
BsnI GGCC 2 cut(s) 34, 425
Bsp1286I GDGCHC 1 cut(s) 473
BspACI CCGC 2 cut(s) 67, 426
BspANI GGCC 2 cut(s) 34, 425
BspCNI CTCAG 2 cut(s) 65, 151
BspLI GGNNCC 1 cut(s) 202
BsrBI CCGCTC 1 cut(s) 428
BsrDI GCAATG 1 cut(s) 336
BsrI ACTGG 1 cut(s) 43
BssECI CCNNGG 1 cut(s) 351
BssT1I CCWWGG 1 cut(s) 351
Bst2UI CCWGG 1 cut(s) 449
Bst4CI ACNGT 1 cut(s) 466
Bst6I CTCTTC 1 cut(s) 226
BstC8I GCNNGC 1 cut(s) 430
BstDEI CTNAG 3 cut(s) 52, 138, 519
BstHHI GCGC 1 cut(s) 127
BstMAI GTCTC 3 cut(s) 4, 122, 504
BstMWI GCNNNNNNNGC 2 cut(s) 347, 434
BstNI CCWGG 1 cut(s) 449
BstNSI RCATGY 1 cut(s) 499
BstPAI GACNNNNGTC 1 cut(s) 264
BstSCI CCNGG 1 cut(s) 447
BstSFI CTRYAG 1 cut(s) 225
BstV1I GCAGC 1 cut(s) 16
BsuRI GGCC 2 cut(s) 34, 425
BtsI GCAGTG 1 cut(s) 432
BtsIMutI CAGTG 2 cut(s) 432, 471
Cac8I GCNNGC 1 cut(s) 430
CfoI GCGC 1 cut(s) 127
Cfr13I GGNCC 1 cut(s) 200
Csp6I GTAC 1 cut(s) 452
CviAII CATG 3 cut(s) 70, 304, 496
CviJI RGCY 7 cut(s) 34, 51, 101, 143, 154, 230, 425
CviKI_1 RGCY 7 cut(s) 34, 51, 101, 143, 154, 230, 425
CviQI GTAC 1 cut(s) 452
DdeI CTNAG 3 cut(s) 52, 138, 519
Eam1104I CTCTTC 1 cut(s) 226
EarI CTCTTC 1 cut(s) 226
Eco130I CCWWGG 1 cut(s) 351
Eco147I AGGCCT 1 cut(s) 34
Eco47I GGWCC 1 cut(s) 200
EcoO109I RGGNCCY 1 cut(s) 200
EcoRII CCWGG 1 cut(s) 447
EcoT14I CCWWGG 1 cut(s) 351
ErhI CCWWGG 1 cut(s) 351
Esp3I CGTCTC 2 cut(s) 4, 122
FaeI CATG 3 cut(s) 73, 307, 499
FaiI YATR 7 cut(s) 71, 123, 169, 171, 227, 305, 497
FalI AAGNNNNNCTT 1 cut(s) 502
FaqI GGGAC 2 cut(s) 186, 272
FatI CATG 3 cut(s) 69, 303, 495
Fnu4HI GCNGC 2 cut(s) 5, 426
Fsp4HI GCNGC 2 cut(s) 5, 426
FspBI CTAG 1 cut(s) 390
GlaI GCGC 1 cut(s) 126
GluI GCNGC 2 cut(s) 5, 426
HaeIII GGCC 2 cut(s) 34, 425
HhaI GCGC 1 cut(s) 127
Hin1II CATG 3 cut(s) 73, 307, 499
Hin6I GCGC 1 cut(s) 125
HinP1I GCGC 1 cut(s) 125
HincII GTYRAC 1 cut(s) 79
HindII GTYRAC 1 cut(s) 79
HinfI GANTC 3 cut(s) 80, 162, 444
Hpy166II GTNNAC 2 cut(s) 79, 301
Hpy188I TCNGA 1 cut(s) 55
Hpy188III TCNNGA 2 cut(s) 203, 419
Hpy8I GTNNAC 2 cut(s) 79, 301
HpyAV CCTTC 2 cut(s) 191, 264
HpyCH4III ACNGT 1 cut(s) 466
HpyCH4V TGCA 3 cut(s) 4, 311, 437
HpyF10VI GCNNNNNNNGC 2 cut(s) 347, 434
HpyF3I CTNAG 3 cut(s) 52, 138, 519
Hsp92II CATG 3 cut(s) 73, 307, 499
HspAI GCGC 1 cut(s) 125
LpnPI CCDG 5 cut(s) 12, 24, 125, 434, 461
Lsp1109I GCAGC 1 cut(s) 16
LweI GCATC 2 cut(s) 29, 320
MaeI CTAG 1 cut(s) 390
MaeIII GTNAC 3 cut(s) 283, 361, 491
MbiI CCGCTC 1 cut(s) 428
MboII GAAGA 1 cut(s) 213
MfeI CAATTG 1 cut(s) 438
MhlI GDGCHC 1 cut(s) 473
MluCI AATT 3 cut(s) 240, 438, 474
MlyI GAGTC 2 cut(s) 74, 171
MnlI CCTC 3 cut(s) 24, 364, 415
MspA1I CMGCKG 1 cut(s) 154
MspR9I CCNGG 1 cut(s) 449
MunI CAATTG 1 cut(s) 438
MvaI CCWGG 1 cut(s) 449
MwoI GCNNNNNNNGC 2 cut(s) 347, 434
NlaIII CATG 3 cut(s) 73, 307, 499
NlaIV GGNNCC 1 cut(s) 202
NspI RCATGY 1 cut(s) 499
PceI AGGCCT 1 cut(s) 34
PciI ACATGT 1 cut(s) 495
PfeI GAWTC 1 cut(s) 444
PflMI CCANNNNNTGG 1 cut(s) 393
PkrI GCNGC 2 cut(s) 6, 427
PleI GAGTC 2 cut(s) 74, 170
PpsI GAGTC 2 cut(s) 74, 170
PpuMI RGGWCCY 1 cut(s) 200
PscI ACATGT 1 cut(s) 495
PshAI GACNNNNGTC 1 cut(s) 264
Psp5II RGGWCCY 1 cut(s) 200
Psp6I CCWGG 1 cut(s) 447
PspGI CCWGG 1 cut(s) 447
PspN4I GGNNCC 1 cut(s) 202
PspPI GGNCC 1 cut(s) 200
PspPPI RGGWCCY 1 cut(s) 200
PvuII CAGCTG 1 cut(s) 154
RsaI GTAC 1 cut(s) 453
RsaNI GTAC 1 cut(s) 452
SatI GCNGC 2 cut(s) 5, 426
Sau96I GGNCC 1 cut(s) 200
SchI GAGTC 2 cut(s) 74, 171
ScrFI CCNGG 1 cut(s) 449
SduI GDGCHC 1 cut(s) 473
SetI ASST 6 cut(s) 103, 156, 202, 232, 375, 518
SfaNI GCATC 2 cut(s) 29, 320
SfcI CTRYAG 1 cut(s) 225
SinI GGWCC 1 cut(s) 200
SmlI CTYRAG 1 cut(s) 419
SmoI CTYRAG 1 cut(s) 419
Sse9I AATT 3 cut(s) 240, 438, 474
SseBI AGGCCT 1 cut(s) 34
SsiI CCGC 2 cut(s) 67, 426
SspI AATATT 1 cut(s) 459
SspMI CTAG 1 cut(s) 390
StuI AGGCCT 1 cut(s) 34
StyD4I CCNGG 1 cut(s) 447
StyI CCWWGG 1 cut(s) 351
TaaI ACNGT 1 cut(s) 466
TaqI TCGA 2 cut(s) 268, 280
TasI AATT 3 cut(s) 240, 438, 474
TauI GCSGC 1 cut(s) 428
TfiI GAWTC 1 cut(s) 444
TscAI CASTG 2 cut(s) 439, 471
TseI GCWGC 1 cut(s) 4
TspRI CASTG 2 cut(s) 439, 471
Van91I CCANNNNNTGG 1 cut(s) 393
VpaK11BI GGWCC 1 cut(s) 200
XceI RCATGY 1 cut(s) 499
XspI CTAG 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.