Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0005333

Physical Location & Seq

Genomic Coordinates Forward (+)

24009811 .. 24011806

Gene Structure 1996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g22830.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGAAAACAATAAATTACAGAGTGGGCCCCACTTCCAAAGGTTTTTTTTTTTTTTTTTTTTTTCGGGACATCGAAAGCTCAAAACCCCTGAGTTCGAGATCGACGACGAAGAAGACGAAGATGCAGCAAAGAAAACCAGCGTCAGGAAGGCCTACTGGAACAGATGGCTCAGATTTCAACTACCGCATGGTGGTTGACTCTCGGTATCAGAAGGTAGCTAAAGGGAAGTCTCGTCTGTACTCTCTTATTCTAACTCAGGCCGTCATTCAATTGACAGGAGTCCTTTATGCTTTTCTGTTTACATCAGATGGGGAAGGTCCAAATGTGATTGCCATCTCATCTGTTGCTATTGGTTCTATTTCTTTGATAATCGGGGAGTTGGGTCGAAGGCGCAGCCGAGTGTCTTTGTTGAAAGTGTACATGGTTGCATCATCTATTGGAATACTTCTCTCCATTGCTTGTGTTGCTAAGGGAAGTTTAACACTAGCGGTTTTGCAAAATTCAAGTAACTGGGAAACAAAGAAATTTGAACTTGTTGAGGCCACTCGCACTGTAATTGCATTCCTGGTTCAAATATTTGCAATCAGCACAACCACTTCTCTCATCGGTAACATGTCTCCTCCGAAAAGAGCCTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Jagunal

Protein Analysis

213

Amino Acids

23.24

Weight (kDa)

10.46

Isoelectric Point (pI)

39.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51510
fragaria_vesca	FvH4_4g13180 FvH4_4g13180 FvH4_4g13180
malus_domestica	MD07G1255100.v1.1
prunus_persica	Prupe.2G278900_v2.0.a1 Prupe.2G279400_v2.0.a1
pyrus_communis	pycom01g19500 pycom07g22830
rosa_chinensis	RchiOBHm_Chr4g0409771 RchiOBHm_Chr4g0413311
rosa_laevigata	RLG00000008225
rosa_multiflora	Rmu_sc0009573.1_g000005 Rmu_sc0009860.1_g000004
rosa_roxburghii	Rroxscaffold_5G00357240
rosa_rugosa	Rorug04G0119500 Rorug04G0119600 Rorug04G0119700 Rorug04G0119800 Rorug04G0119900
rosa_samantha	Rh2BG188800 Rh4AG179300 Rh4BG178400 Rh4CG189900 Rh4DG174400 Rh5AG393900 Rh6DG341500 Rh7BG185600
rosa_wichuraiana	Rw4G014900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	184, 488
AcsI	RAATTY	2 cut(s)	499, 524
AfaI	GTAC	2 cut(s)	239, 419
AfiI	CCNNNNNNNGG	2 cut(s)	143, 190
AflIII	ACRYGT	1 cut(s)	612
AgsI	TTSAA	6 cut(s)	178, 269, 412, 504, 530, 572
AjnI	CCWGG	1 cut(s)	564
AluBI	AGCT	2 cut(s)	78, 218
AluI	AGCT	2 cut(s)	78, 218
Alw26I	GTCTC	2 cut(s)	234, 621
AoxI	GGCC	4 cut(s)	25, 149, 258, 540
ApaI	GGGCCC	1 cut(s)	29
ApeKI	GCWGC	2 cut(s)	124, 393
ApoI	RAATTY	2 cut(s)	499, 524
AspLEI	GCGC	1 cut(s)	393
AspS9I	GGNCC	3 cut(s)	25, 26, 317
AvaII	GGWCC	1 cut(s)	317
BaeGI	GKGCMC	1 cut(s)	29
BanII	GRGCYC	1 cut(s)	29
BbsI	GAAGAC	1 cut(s)	119
BbvI	GCAGC	2 cut(s)	136, 405
BccI	CCATC	3 cut(s)	158, 302, 341
BceAI	ACGGC	1 cut(s)	245
BciT130I	CCWGG	1 cut(s)	566
BcoDI	GTCTC	2 cut(s)	234, 621
BfaI	CTAG	1 cut(s)	485
BisI	GCNGC	2 cut(s)	125, 394
BlsI	GCNGC	2 cut(s)	126, 395
Bme1390I	CCNGG	1 cut(s)	566
Bme18I	GGWCC	1 cut(s)	317
BmgT120I	GGNCC	3 cut(s)	25, 26, 317
BmiI	GGNNCC	2 cut(s)	27, 28
BmrFI	CCNGG	1 cut(s)	566
BmrI	ACTGGG	1 cut(s)	520
BmsI	GCATC	2 cut(s)	111, 437
BmuI	ACTGGG	1 cut(s)	520
BoxI	GACNNNNGTC	1 cut(s)	278
BpiI	GAAGAC	1 cut(s)	119
Bpu10I	CCTNAGC	1 cut(s)	468
BsaBI	GATNNNNATC	1 cut(s)	332
Bsc4I	CCNNNNNNNGG	2 cut(s)	143, 190
Bse1I	ACTGG	2 cut(s)	160, 515
Bse3DI	GCAATG	1 cut(s)	453
Bse8I	GATNNNNATC	1 cut(s)	332
BseBI	CCWGG	1 cut(s)	566
BseJI	GATNNNNATC	1 cut(s)	332
BseLI	CCNNNNNNNGG	2 cut(s)	143, 190
BseMI	GCAATG	1 cut(s)	453
BseMII	CTCAG	3 cut(s)	80, 183, 269
BseNI	ACTGG	2 cut(s)	160, 515
BseRI	GAGGAG	1 cut(s)	609
BseSI	GKGCMC	1 cut(s)	29
BseXI	GCAGC	2 cut(s)	136, 405
BshFI	GGCC	4 cut(s)	27, 151, 260, 542
BslFI	GGGAC	1 cut(s)	80
BslI	CCNNNNNNNGG	2 cut(s)	143, 190
BsmAI	GTCTC	2 cut(s)	234, 621
BsmFI	GGGAC	1 cut(s)	80
BsmI	GAATGC	1 cut(s)	560
BsnI	GGCC	4 cut(s)	27, 151, 260, 542
Bsp120I	GGGCCC	1 cut(s)	25
Bsp1286I	GDGCHC	1 cut(s)	29
Bsp1407I	TGTACA	1 cut(s)	417
Bsp143I	GATC	1 cut(s)	98
BspACI	CCGC	2 cut(s)	184, 488
BspANI	GGCC	4 cut(s)	27, 151, 260, 542
BspCNI	CTCAG	3 cut(s)	81, 182, 268
BspLI	GGNNCC	2 cut(s)	27, 28
BsrDI	GCAATG	1 cut(s)	453
BsrGI	TGTACA	1 cut(s)	417
BsrI	ACTGG	2 cut(s)	160, 515
BssMI	GATC	1 cut(s)	98
Bst2UI	CCWGG	1 cut(s)	566
Bst4CI	ACNGT	1 cut(s)	553
BstAUI	TGTACA	1 cut(s)	417
BstDEI	CTNAG	4 cut(s)	89, 169, 255, 468
BstHHI	GCGC	1 cut(s)	393
BstKTI	GATC	1 cut(s)	101
BstMAI	GTCTC	2 cut(s)	234, 621
BstMBI	GATC	1 cut(s)	98
BstMWI	GCNNNNNNNGC	1 cut(s)	464
BstNI	CCWGG	1 cut(s)	566
BstNSI	RCATGY	1 cut(s)	616
BstPAI	GACNNNNGTC	1 cut(s)	278
BstSCI	CCNGG	1 cut(s)	564
BstSLI	GKGCMC	1 cut(s)	29
BstV1I	GCAGC	2 cut(s)	136, 405
BstV2I	GAAGAC	1 cut(s)	119
BsuRI	GGCC	4 cut(s)	27, 151, 260, 542
BtsIMutI	CAGTG	1 cut(s)	549
CfoI	GCGC	1 cut(s)	393
Cfr13I	GGNCC	3 cut(s)	25, 26, 317
CseI	GACGC	1 cut(s)	129
Csp6I	GTAC	2 cut(s)	238, 418
CviAII	CATG	3 cut(s)	187, 421, 613
CviJI	RGCY	9 cut(s)	27, 78, 151, 168, 218, 260, 396, 542, 632
CviKI_1	RGCY	9 cut(s)	27, 78, 151, 168, 218, 260, 396, 542, 632
CviQI	GTAC	2 cut(s)	238, 418
DdeI	CTNAG	4 cut(s)	89, 169, 255, 468
DpnI	GATC	1 cut(s)	100
DpnII	GATC	1 cut(s)	98
Eco147I	AGGCCT	1 cut(s)	151
Eco24I	GRGCYC	1 cut(s)	29
Eco47I	GGWCC	1 cut(s)	317
EcoO109I	RGGNCCY	1 cut(s)	26
EcoRII	CCWGG	1 cut(s)	564
EcoT38I	GRGCYC	1 cut(s)	29
FaeI	CATG	3 cut(s)	190, 424, 616
FaiI	YATR	4 cut(s)	188, 288, 422, 614
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	3 cut(s)	186, 420, 612
Fnu4HI	GCNGC	2 cut(s)	125, 394
FriOI	GRGCYC	1 cut(s)	29
Fsp4HI	GCNGC	2 cut(s)	125, 394
FspBI	CTAG	1 cut(s)	485
GlaI	GCGC	1 cut(s)	392
GluI	GCNGC	2 cut(s)	125, 394
HaeIII	GGCC	4 cut(s)	27, 151, 260, 542
HgaI	GACGC	1 cut(s)	129
HhaI	GCGC	1 cut(s)	393
Hin1II	CATG	3 cut(s)	190, 424, 616
Hin6I	GCGC	1 cut(s)	391
HinP1I	GCGC	1 cut(s)	391
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
HinfI	GANTC	2 cut(s)	197, 279
Hpy166II	GTNNAC	3 cut(s)	196, 300, 418
Hpy188I	TCNGA	4 cut(s)	172, 210, 307, 624
Hpy188III	TCNNGA	3 cut(s)	65, 96, 144
Hpy8I	GTNNAC	3 cut(s)	196, 300, 418
Hpy99I	CGWCG	2 cut(s)	106, 109
HpyAV	CCTTC	4 cut(s)	141, 205, 308, 381
HpyCH4III	ACNGT	1 cut(s)	553
HpyCH4V	TGCA	5 cut(s)	124, 428, 496, 560, 581
HpyF10VI	GCNNNNNNNGC	1 cut(s)	464
HpyF3I	CTNAG	4 cut(s)	89, 169, 255, 468
Hsp92II	CATG	3 cut(s)	190, 424, 616
HspAI	GCGC	1 cut(s)	391
Kzo9I	GATC	1 cut(s)	98
LpnPI	CCDG	9 cut(s)	101, 129, 141, 150, 242, 261, 496, 551, 578
Lsp1109I	GCAGC	2 cut(s)	136, 405
LweI	GCATC	2 cut(s)	111, 437
MaeI	CTAG	1 cut(s)	485
MaeIII	GTNAC	2 cut(s)	506, 608
MalI	GATC	1 cut(s)	100
MboI	GATC	1 cut(s)	98
MboII	GAAGA	3 cut(s)	121, 124, 130
MfeI	CAATTG	1 cut(s)	269
MhlI	GDGCHC	1 cut(s)	29
MluCI	AATT	5 cut(s)	13, 269, 499, 524, 555
MlyI	GAGTC	2 cut(s)	191, 288
MnlI	CCTC	2 cut(s)	532, 630
MseI	TTAA	1 cut(s)	479
MspR9I	CCNGG	1 cut(s)	566
MunI	CAATTG	1 cut(s)	269
Mva1269I	GAATGC	1 cut(s)	560
MvaI	CCWGG	1 cut(s)	566
MwoI	GCNNNNNNNGC	1 cut(s)	464
NdeII	GATC	1 cut(s)	98
NlaIII	CATG	3 cut(s)	190, 424, 616
NlaIV	GGNNCC	2 cut(s)	27, 28
NmeAIII	GCCGAG	1 cut(s)	422
NspI	RCATGY	1 cut(s)	616
PceI	AGGCCT	1 cut(s)	151
PciI	ACATGT	1 cut(s)	612
PcsI	WCGNNNNNNNCGW	2 cut(s)	101, 113
PctI	GAATGC	1 cut(s)	560
PkrI	GCNGC	2 cut(s)	126, 395
PleI	GAGTC	2 cut(s)	191, 287
PpsI	GAGTC	2 cut(s)	191, 287
PscI	ACATGT	1 cut(s)	612
PshAI	GACNNNNGTC	1 cut(s)	278
Psp6I	CCWGG	1 cut(s)	564
PspGI	CCWGG	1 cut(s)	564
PspN4I	GGNNCC	2 cut(s)	27, 28
PspOMI	GGGCCC	1 cut(s)	25
PspPI	GGNCC	3 cut(s)	25, 26, 317
RsaI	GTAC	2 cut(s)	239, 419
RsaNI	GTAC	2 cut(s)	238, 418
SaqAI	TTAA	1 cut(s)	479
SatI	GCNGC	2 cut(s)	125, 394
Sau3AI	GATC	1 cut(s)	98
Sau96I	GGNCC	3 cut(s)	25, 26, 317
SchI	GAGTC	2 cut(s)	191, 288
ScrFI	CCNGG	1 cut(s)	566
SduI	GDGCHC	1 cut(s)	29
SetI	ASST	5 cut(s)	43, 80, 216, 220, 319
SfaNI	GCATC	2 cut(s)	111, 437
SinI	GGWCC	1 cut(s)	317
Sse9I	AATT	5 cut(s)	13, 269, 499, 524, 555
SseBI	AGGCCT	1 cut(s)	151
SsiI	CCGC	2 cut(s)	184, 488
SspI	AATATT	1 cut(s)	576
SspMI	CTAG	1 cut(s)	485
StuI	AGGCCT	1 cut(s)	151
StyD4I	CCNGG	1 cut(s)	564
TaaI	ACNGT	1 cut(s)	553
TaqI	TCGA	4 cut(s)	72, 95, 101, 385
TasI	AATT	5 cut(s)	13, 269, 499, 524, 555
TatI	WGTACW	2 cut(s)	237, 417
Tru1I	TTAA	1 cut(s)	479
Tru9I	TTAA	1 cut(s)	479
TscAI	CASTG	1 cut(s)	556
TseI	GCWGC	2 cut(s)	124, 393
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	556
VpaK11BI	GGWCC	1 cut(s)	317
XapI	RAATTY	2 cut(s)	499, 524
XceI	RCATGY	1 cut(s)	616
XspI	CTAG	1 cut(s)	485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.