Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009860.1

Orthogroup ID

OG0005333

Physical Location & Seq

Genomic Coordinates Reverse (-)

7743 .. 9621

Gene Structure 1879 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009860.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

atgcagcagagaagattagcatcatcagggaggcctactggaacagatggctcagatttcaactaccgcatggttgttgactctcggtatcaaaaagtagctgatggaaagtctcgtctctatgcgcttattctcactcaggctgtctttcagctgataggagtcctatatacatttctttttacttccaaaggggaaggtcctgatgtgattgctatctcttctatagctattggttcaatttctttgatacttggggacttgggtcgaaggcgtagtcgagtaactttgttgaaagtttacatggttgcatcatctattggagtgcttctttccattgcttgtgttgccaaggggaatgtaacattagaggttttccaaactcccactagatgggaaacacacaagtttgaacttcttgaggctgctcgcactgcaattggattcttggtacaaatatttacagtgagcacaatcacttctctaatcagtaacatgtctccaccgaaaagaacctcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Jagunal

Protein Analysis

173

Amino Acids

18.94

Weight (kDa)

10.13

Isoelectric Point (pI)

42.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51510
fragaria_vesca	FvH4_4g13180 FvH4_4g13180 FvH4_4g13180
malus_domestica	MD07G1255100.v1.1
prunus_persica	Prupe.2G278900_v2.0.a1 Prupe.2G279400_v2.0.a1
pyrus_communis	pycom01g19500 pycom07g22830
rosa_chinensis	RchiOBHm_Chr4g0409771 RchiOBHm_Chr4g0413311
rosa_laevigata	RLG00000008225
rosa_multiflora	Rmu_sc0009573.1_g000005 Rmu_sc0009860.1_g000004
rosa_roxburghii	Rroxscaffold_5G00357240
rosa_rugosa	Rorug04G0119500 Rorug04G0119600 Rorug04G0119700 Rorug04G0119800 Rorug04G0119900
rosa_samantha	Rh2BG188800 Rh4AG179300 Rh4BG178400 Rh4CG189900 Rh4DG174400 Rh5AG393900 Rh6DG341500 Rh7BG185600
rosa_wichuraiana	Rw4G014900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	393
AciI	CCGC	1 cut(s)	67
AfaI	GTAC	1 cut(s)	453
AfiI	CCNNNNNNNGG	1 cut(s)	393
AflIII	ACRYGT	1 cut(s)	495
AgsI	TTSAA	4 cut(s)	61, 240, 295, 413
AluBI	AGCT	3 cut(s)	101, 154, 230
AluI	AGCT	3 cut(s)	101, 154, 230
Alw21I	GWGCWC	1 cut(s)	473
Alw26I	GTCTC	3 cut(s)	117, 122, 504
AoxI	GGCC	1 cut(s)	32
ApeKI	GCWGC	2 cut(s)	4, 425
ArsI	GACNNNNNNTTYG	2 cut(s)	262, 294
AspLEI	GCGC	1 cut(s)	127
AspS9I	GGNCC	1 cut(s)	200
AvaII	GGWCC	1 cut(s)	200
Bbv12I	GWGCWC	1 cut(s)	473
BbvI	GCAGC	2 cut(s)	16, 412
BccI	CCATC	3 cut(s)	41, 98, 387
BcoDI	GTCTC	3 cut(s)	117, 122, 504
BfaI	CTAG	1 cut(s)	390
BfmI	CTRYAG	1 cut(s)	225
BisI	GCNGC	2 cut(s)	5, 426
BlsI	GCNGC	2 cut(s)	6, 427
Bme18I	GGWCC	1 cut(s)	200
BmgT120I	GGNCC	1 cut(s)	200
BmsI	GCATC	2 cut(s)	29, 320
BoxI	GACNNNNGTC	1 cut(s)	264
BpuEI	CTTGAG	1 cut(s)	440
BsaBI	GATNNNNATC	2 cut(s)	19, 215
BsaJI	CCNNGG	1 cut(s)	351
Bsc4I	CCNNNNNNNGG	1 cut(s)	393
Bse1I	ACTGG	1 cut(s)	43
Bse3DI	GCAATG	1 cut(s)	336
Bse8I	GATNNNNATC	2 cut(s)	19, 215
BseDI	CCNNGG	1 cut(s)	351
BseJI	GATNNNNATC	2 cut(s)	19, 215
BseLI	CCNNNNNNNGG	1 cut(s)	393
BseMI	GCAATG	1 cut(s)	336
BseMII	CTCAG	2 cut(s)	66, 152
BseNI	ACTGG	1 cut(s)	43
BseXI	GCAGC	2 cut(s)	16, 412
BshFI	GGCC	1 cut(s)	34
BsiHKAI	GWGCWC	1 cut(s)	473
BslFI	GGGAC	1 cut(s)	272
BslI	CCNNNNNNNGG	1 cut(s)	393
BsmAI	GTCTC	3 cut(s)	117, 122, 504
BsmBI	CGTCTC	1 cut(s)	122
BsmFI	GGGAC	1 cut(s)	272
BsnI	GGCC	1 cut(s)	34
Bsp1286I	GDGCHC	1 cut(s)	473
BspACI	CCGC	1 cut(s)	67
BspANI	GGCC	1 cut(s)	34
BspCNI	CTCAG	2 cut(s)	65, 151
BsrDI	GCAATG	1 cut(s)	336
BsrI	ACTGG	1 cut(s)	43
BssECI	CCNNGG	1 cut(s)	351
BssT1I	CCWWGG	1 cut(s)	351
Bst4CI	ACNGT	1 cut(s)	466
Bst6I	CTCTTC	1 cut(s)	226
BstC8I	GCNNGC	1 cut(s)	430
BstDEI	CTNAG	3 cut(s)	52, 138, 519
BstHHI	GCGC	1 cut(s)	127
BstMAI	GTCTC	3 cut(s)	117, 122, 504
BstMWI	GCNNNNNNNGC	2 cut(s)	347, 434
BstNSI	RCATGY	1 cut(s)	499
BstPAI	GACNNNNGTC	1 cut(s)	264
BstSFI	CTRYAG	1 cut(s)	225
BstV1I	GCAGC	2 cut(s)	16, 412
BsuRI	GGCC	1 cut(s)	34
BtsI	GCAGTG	1 cut(s)	432
BtsIMutI	CAGTG	2 cut(s)	432, 471
Cac8I	GCNNGC	1 cut(s)	430
CfoI	GCGC	1 cut(s)	127
Cfr13I	GGNCC	1 cut(s)	200
Csp6I	GTAC	1 cut(s)	452
CviAII	CATG	3 cut(s)	70, 304, 496
CviJI	RGCY	7 cut(s)	34, 51, 101, 143, 154, 230, 425
CviKI_1	RGCY	7 cut(s)	34, 51, 101, 143, 154, 230, 425
CviQI	GTAC	1 cut(s)	452
DdeI	CTNAG	3 cut(s)	52, 138, 519
Eam1104I	CTCTTC	1 cut(s)	226
EarI	CTCTTC	1 cut(s)	226
Eco130I	CCWWGG	1 cut(s)	351
Eco147I	AGGCCT	1 cut(s)	34
Eco47I	GGWCC	1 cut(s)	200
EcoO109I	RGGNCCY	1 cut(s)	200
EcoT14I	CCWWGG	1 cut(s)	351
ErhI	CCWWGG	1 cut(s)	351
Esp3I	CGTCTC	1 cut(s)	122
FaeI	CATG	3 cut(s)	73, 307, 499
FaiI	YATR	7 cut(s)	71, 123, 169, 171, 227, 305, 497
FalI	AAGNNNNNCTT	1 cut(s)	502
FaqI	GGGAC	1 cut(s)	272
FatI	CATG	3 cut(s)	69, 303, 495
Fnu4HI	GCNGC	2 cut(s)	5, 426
Fsp4HI	GCNGC	2 cut(s)	5, 426
FspBI	CTAG	1 cut(s)	390
GlaI	GCGC	1 cut(s)	126
GluI	GCNGC	2 cut(s)	5, 426
HaeIII	GGCC	1 cut(s)	34
HhaI	GCGC	1 cut(s)	127
Hin1II	CATG	3 cut(s)	73, 307, 499
Hin6I	GCGC	1 cut(s)	125
HinP1I	GCGC	1 cut(s)	125
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
HinfI	GANTC	3 cut(s)	80, 162, 444
Hpy166II	GTNNAC	2 cut(s)	79, 301
Hpy188I	TCNGA	1 cut(s)	55
Hpy188III	TCNNGA	2 cut(s)	203, 419
Hpy8I	GTNNAC	2 cut(s)	79, 301
HpyAV	CCTTC	2 cut(s)	191, 264
HpyCH4III	ACNGT	1 cut(s)	466
HpyCH4V	TGCA	3 cut(s)	4, 311, 437
HpyF10VI	GCNNNNNNNGC	2 cut(s)	347, 434
HpyF3I	CTNAG	3 cut(s)	52, 138, 519
Hsp92II	CATG	3 cut(s)	73, 307, 499
HspAI	GCGC	1 cut(s)	125
LpnPI	CCDG	4 cut(s)	12, 24, 125, 216
Lsp1109I	GCAGC	2 cut(s)	16, 412
LweI	GCATC	2 cut(s)	29, 320
MaeI	CTAG	1 cut(s)	390
MaeIII	GTNAC	3 cut(s)	283, 361, 491
MboII	GAAGA	2 cut(s)	24, 213
MfeI	CAATTG	1 cut(s)	438
MhlI	GDGCHC	1 cut(s)	473
MluCI	AATT	2 cut(s)	240, 438
MlyI	GAGTC	2 cut(s)	74, 171
MnlI	CCTC	3 cut(s)	24, 364, 415
MspA1I	CMGCKG	1 cut(s)	154
MunI	CAATTG	1 cut(s)	438
MwoI	GCNNNNNNNGC	2 cut(s)	347, 434
NlaIII	CATG	3 cut(s)	73, 307, 499
NspI	RCATGY	1 cut(s)	499
PceI	AGGCCT	1 cut(s)	34
PciI	ACATGT	1 cut(s)	495
PfeI	GAWTC	1 cut(s)	444
PflMI	CCANNNNNTGG	1 cut(s)	393
PkrI	GCNGC	2 cut(s)	6, 427
PleI	GAGTC	2 cut(s)	74, 170
PpsI	GAGTC	2 cut(s)	74, 170
PpuMI	RGGWCCY	1 cut(s)	200
PscI	ACATGT	1 cut(s)	495
PshAI	GACNNNNGTC	1 cut(s)	264
Psp5II	RGGWCCY	1 cut(s)	200
PspPI	GGNCC	1 cut(s)	200
PspPPI	RGGWCCY	1 cut(s)	200
PvuII	CAGCTG	1 cut(s)	154
RsaI	GTAC	1 cut(s)	453
RsaNI	GTAC	1 cut(s)	452
SatI	GCNGC	2 cut(s)	5, 426
Sau96I	GGNCC	1 cut(s)	200
SchI	GAGTC	2 cut(s)	74, 171
SduI	GDGCHC	1 cut(s)	473
SetI	ASST	6 cut(s)	103, 156, 202, 232, 375, 518
SfaNI	GCATC	2 cut(s)	29, 320
SfcI	CTRYAG	1 cut(s)	225
SinI	GGWCC	1 cut(s)	200
SmlI	CTYRAG	1 cut(s)	419
SmoI	CTYRAG	1 cut(s)	419
Sse9I	AATT	2 cut(s)	240, 438
SseBI	AGGCCT	1 cut(s)	34
SsiI	CCGC	1 cut(s)	67
SspI	AATATT	1 cut(s)	459
SspMI	CTAG	1 cut(s)	390
StuI	AGGCCT	1 cut(s)	34
StyI	CCWWGG	1 cut(s)	351
TaaI	ACNGT	1 cut(s)	466
TaqI	TCGA	2 cut(s)	268, 280
TasI	AATT	2 cut(s)	240, 438
TfiI	GAWTC	1 cut(s)	444
TscAI	CASTG	2 cut(s)	439, 471
TseI	GCWGC	2 cut(s)	4, 425
TspRI	CASTG	2 cut(s)	439, 471
Van91I	CCANNNNNTGG	1 cut(s)	393
VpaK11BI	GGWCC	1 cut(s)	200
XceI	RCATGY	1 cut(s)	499
XspI	CTAG	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.