Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005333

Physical Location & Seq

Genomic Coordinates Reverse (-)

18965288 .. 18968898

Gene Structure 3611 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0119900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGAAGTATCACATGGAGAACACAGAAGCCTTCCTGAGGCTCTCTTCAGTTATCCTCTTGGTCCTCACTGCGTTACTAGTAGGACTTGATCACCAGACCAAATTTGTCTTCTTCACTTACAGAAAAGCTTCTTTCGACCAGGTCAATGCCCTCCTGGTTCTGGTTTATGTTGATGCTGTGGTTGCTGGATACAATCTGGTTCGACTGTTTGGCAAGTGTTCAATGTCAGCTGGTTTAGTCAAACAAAATCCACAAGGGTCCAGCGTATACCTAGCTTGGCTTTCTCTATTGCTCGATCAGATAGCAGTATATGTGGCGTTTGGGGCAAACTCAGCTGCGTTTCAGGCTTCATTGATAGCATTAACAGGCATATCAGAATTTCAGTGGATGAAGTTGTGCAACAAATACTCCAGATTCTGCTTTCAAATGGGTGGAGCCTTGTCATGTGGATACCTAGCATGCCTTCTCTTGATTTTCATATCCTTCATCACTGCCTTTAATCTGTTTAGGCTTTACTCACCCAAGAAACTGTTTCTCTTAAAGAGCATATCAGGGCCGCTAGTCCCGACCCCGGCAAGTTTAAAATTAGTCGGCAAGGCCCAAGCATTATTAAAGGTGGACAACGTCCAGCTGGCCCAAGGTATATTAGCCATGCCTAGCTGGCCCAAGCCGGCAACTCTGAATGATCTTTGGCGCTTTTTCAAGCGTGTTTGGGCCTTAGATTGTGGCTTCAAGATTCAGGAACGAGGACACAATTGCTTCATTCTTGCTTTTGATCTGCTACGGCATCGCAACAATGTCATACATGGAGGACCTTGGCGTTTCAACCAAGCCTCCATCGTGCTCCAAAAATATGACGGAGTGGCTCCACTGCAATCTCTTGTCCTAGATTCACTCTTCTTCTGGGTCCGCATCTCCAACATCCCTTCATTGTTTGAGGTACCCAAAAACTTCCCTAATATCGCTTCTATTGCTGGAGATATATCAAATATGATGACAAGCTATTTACAAATCGAGGCAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Jagunal

Protein Analysis

341

Amino Acids

38.19

Weight (kDa)

9.54

Isoelectric Point (pI)

34.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_dom	PF04535	7 - 156	2.4e-31	Casparian strip membrane protein domain
DUF4283	PF14111	222 - 286	6.3e-10	Domain of unknown function (DUF4283)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51510
fragaria_vesca	FvH4_4g13180 FvH4_4g13180 FvH4_4g13180
malus_domestica	MD07G1255100.v1.1
prunus_persica	Prupe.2G278900_v2.0.a1 Prupe.2G279400_v2.0.a1
pyrus_communis	pycom01g19500 pycom07g22830
rosa_chinensis	RchiOBHm_Chr4g0409771 RchiOBHm_Chr4g0413311
rosa_laevigata	RLG00000008225
rosa_multiflora	Rmu_sc0009573.1_g000005 Rmu_sc0009860.1_g000004
rosa_roxburghii	Rroxscaffold_5G00357240
rosa_rugosa	Rorug04G0119500 Rorug04G0119600 Rorug04G0119700 Rorug04G0119800 Rorug04G0119900
rosa_samantha	Rh2BG188800 Rh4AG179300 Rh4BG178400 Rh4CG189900 Rh4DG174400 Rh5AG393900 Rh6DG341500 Rh7BG185600
rosa_wichuraiana	Rw4G014900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	940
AccB1I	GGYRCC	1 cut(s)	940
AccI	GTMKAC	1 cut(s)	267
AciI	CCGC	2 cut(s)	557, 910
AcsI	RAATTY	2 cut(s)	101, 377
AcuI	CTGAAG	1 cut(s)	30
AfaI	GTAC	1 cut(s)	942
AfiI	CCNNNNNNNGG	3 cut(s)	36, 160, 571
AgsI	TTSAA	5 cut(s)	222, 425, 703, 733, 826
AhlI	ACTAGT	1 cut(s)	76
AjnI	CCWGG	2 cut(s)	138, 153
AjuI	GAANNNNNNNTTGG	2 cut(s)	92, 124
AluBI	AGCT	7 cut(s)	128, 230, 275, 335, 631, 660, 1002
AluI	AGCT	7 cut(s)	128, 230, 275, 335, 631, 660, 1002
Alw21I	GWGCWC	1 cut(s)	846
AlwNI	CAGNNNCTG	1 cut(s)	417
AoxI	GGCC	5 cut(s)	554, 597, 633, 662, 714
ApeKI	GCWGC	1 cut(s)	335
ApoI	RAATTY	2 cut(s)	101, 377
Asp700I	GAANNNNTTC	1 cut(s)	127
Asp718I	GGTACC	1 cut(s)	940
AspLEI	GCGC	1 cut(s)	696
AspS9I	GGNCC	9 cut(s)	61, 258, 554, 598, 634, 663, 714, 812, 907
AsuC2I	CCSGG	1 cut(s)	572
AsuHPI	GGTGA	2 cut(s)	83, 510
AvaII	GGWCC	4 cut(s)	61, 258, 812, 907
AxyI	CCTNAGG	1 cut(s)	35
BanI	GGYRCC	1 cut(s)	940
BbsI	GAAGAC	1 cut(s)	100
Bbv12I	GWGCWC	1 cut(s)	846
BbvI	GCAGC	1 cut(s)	322
BccI	CCATC	1 cut(s)	845
BceAI	ACGGC	1 cut(s)	800
BciT130I	CCWGG	2 cut(s)	140, 155
BciVI	GTATCC	2 cut(s)	182, 443
BclI	TGATCA	1 cut(s)	88
BcnI	CCSGG	1 cut(s)	572
BcuI	ACTAGT	1 cut(s)	76
BfaI	CTAG	6 cut(s)	77, 272, 455, 560, 657, 887
BfoI	RGCGCY	1 cut(s)	697
BfuI	GTATCC	2 cut(s)	182, 443
BglI	GCCNNNNNGGC	1 cut(s)	661
BisI	GCNGC	2 cut(s)	336, 557
BlsI	GCNGC	2 cut(s)	337, 558
Bme1390I	CCNGG	3 cut(s)	140, 155, 572
Bme18I	GGWCC	4 cut(s)	61, 258, 812, 907
BmgT120I	GGNCC	9 cut(s)	61, 258, 554, 598, 634, 663, 714, 812, 907
BmiI	GGNNCC	5 cut(s)	259, 436, 867, 908, 942
BmrFI	CCNGG	3 cut(s)	140, 155, 572
BmsI	GCATC	3 cut(s)	163, 796, 921
BpiI	GAAGAC	1 cut(s)	100
BpmI	CTGGAG	2 cut(s)	394, 996
BpuMI	CCSGG	1 cut(s)	572
BsaJI	CCNNGG	3 cut(s)	570, 637, 815
BsaXI	ACNNNNNCTCC	4 cut(s)	392, 422, 818, 848
Bsc4I	CCNNNNNNNGG	3 cut(s)	36, 160, 571
Bse118I	RCCGGY	1 cut(s)	670
Bse21I	CCTNAGG	1 cut(s)	35
BseBI	CCWGG	2 cut(s)	140, 155
BseDI	CCNNGG	3 cut(s)	570, 637, 815
BseGI	GGATG	2 cut(s)	393, 921
BseLI	CCNNNNNNNGG	3 cut(s)	36, 160, 571
BseMII	CTCAG	2 cut(s)	26, 345
BseXI	GCAGC	1 cut(s)	322
BshFI	GGCC	5 cut(s)	556, 599, 635, 664, 716
BshNI	GGYRCC	1 cut(s)	940
BsiHKAI	GWGCWC	1 cut(s)	846
BsiSI	CCGG	2 cut(s)	572, 671
BslFI	GGGAC	1 cut(s)	548
BslI	CCNNNNNNNGG	3 cut(s)	36, 160, 571
BsmFI	GGGAC	1 cut(s)	548
BsnI	GGCC	5 cut(s)	556, 599, 635, 664, 716
Bsp1286I	GDGCHC	1 cut(s)	846
Bsp143I	GATC	4 cut(s)	88, 295, 685, 775
BspACI	CCGC	2 cut(s)	557, 910
BspANI	GGCC	5 cut(s)	556, 599, 635, 664, 716
BspCNI	CTCAG	2 cut(s)	27, 344
BspLI	GGNNCC	5 cut(s)	259, 436, 867, 908, 942
BspT107I	GGYRCC	1 cut(s)	940
BsrFI	RCCGGY	1 cut(s)	670
BssAI	RCCGGY	1 cut(s)	670
BssECI	CCNNGG	3 cut(s)	570, 637, 815
BssMI	GATC	4 cut(s)	88, 295, 685, 775
BssNAI	GTATAC	1 cut(s)	268
BssT1I	CCWWGG	2 cut(s)	637, 815
Bst1107I	GTATAC	1 cut(s)	268
Bst2UI	CCWGG	2 cut(s)	140, 155
Bst4CI	ACNGT	2 cut(s)	207, 531
Bst6I	CTCTTC	2 cut(s)	49, 902
BstC8I	GCNNGC	4 cut(s)	460, 633, 662, 672
BstDEI	CTNAG	3 cut(s)	35, 331, 718
BstENI	CCTNNNNNAGG	1 cut(s)	34
BstF5I	GGATG	2 cut(s)	393, 921
BstH2I	RGCGCY	1 cut(s)	697
BstHHI	GCGC	1 cut(s)	696
BstKTI	GATC	4 cut(s)	91, 298, 688, 778
BstMBI	GATC	4 cut(s)	88, 295, 685, 775
BstMWI	GCNNNNNNNGC	6 cut(s)	182, 323, 332, 344, 661, 971
BstNI	CCWGG	2 cut(s)	140, 155
BstNSI	RCATGY	1 cut(s)	462
BstSCI	CCNGG	3 cut(s)	138, 153, 570
BstV1I	GCAGC	1 cut(s)	322
BstV2I	GAAGAC	1 cut(s)	100
BstZ17I	GTATAC	1 cut(s)	268
Bsu36I	CCTNAGG	1 cut(s)	35
BsuI	GTATCC	2 cut(s)	182, 443
BsuRI	GGCC	5 cut(s)	556, 599, 635, 664, 716
BtgZI	GCGATG	1 cut(s)	773
BtsCI	GGATG	2 cut(s)	393, 921
BtsI	GCAGTG	3 cut(s)	66, 489, 869
BtsIMutI	CAGTG	4 cut(s)	66, 389, 489, 869
Cac8I	GCNNGC	4 cut(s)	460, 633, 662, 672
CaiI	CAGNNNCTG	1 cut(s)	417
CfoI	GCGC	1 cut(s)	696
Cfr10I	RCCGGY	1 cut(s)	670
Cfr13I	GGNCC	9 cut(s)	61, 258, 554, 598, 634, 663, 714, 812, 907
CsiI	ACCWGGT	1 cut(s)	138
Csp6I	GTAC	1 cut(s)	941
CviAII	CATG	5 cut(s)	13, 444, 459, 652, 806
CviQI	GTAC	1 cut(s)	941
DdeI	CTNAG	3 cut(s)	35, 331, 718
DpnI	GATC	4 cut(s)	90, 297, 687, 777
DpnII	GATC	4 cut(s)	88, 295, 685, 775
DraI	TTTAAA	1 cut(s)	582
Eam1104I	CTCTTC	2 cut(s)	49, 902
EarI	CTCTTC	2 cut(s)	49, 902
Eco130I	CCWWGG	2 cut(s)	637, 815
Eco47I	GGWCC	4 cut(s)	61, 258, 812, 907
Eco57I	CTGAAG	1 cut(s)	30
Eco81I	CCTNAGG	1 cut(s)	35
EcoNI	CCTNNNNNAGG	1 cut(s)	34
EcoO109I	RGGNCCY	1 cut(s)	812
EcoRII	CCWGG	2 cut(s)	138, 153
EcoT14I	CCWWGG	2 cut(s)	637, 815
ErhI	CCWWGG	2 cut(s)	637, 815
FaeI	CATG	5 cut(s)	16, 447, 462, 655, 809
FaqI	GGGAC	1 cut(s)	548
FatI	CATG	5 cut(s)	12, 443, 458, 651, 805
FbaI	TGATCA	1 cut(s)	88
FblI	GTMKAC	1 cut(s)	267
Fnu4HI	GCNGC	2 cut(s)	336, 557
FokI	GGATG	2 cut(s)	400, 908
Fsp4HI	GCNGC	2 cut(s)	336, 557
FspBI	CTAG	6 cut(s)	77, 272, 455, 560, 657, 887
GlaI	GCGC	1 cut(s)	695
GluI	GCNGC	2 cut(s)	336, 557
GsuI	CTGGAG	2 cut(s)	394, 996
HaeII	RGCGCY	1 cut(s)	697
HaeIII	GGCC	5 cut(s)	556, 599, 635, 664, 716
HapII	CCGG	2 cut(s)	572, 671
HhaI	GCGC	1 cut(s)	696
Hin1II	CATG	5 cut(s)	16, 447, 462, 655, 809
Hin6I	GCGC	1 cut(s)	694
HinP1I	GCGC	1 cut(s)	694
HindIII	AAGCTT	1 cut(s)	126
HinfI	GANTC	3 cut(s)	414, 736, 890
HpaII	CCGG	2 cut(s)	572, 671
HphI	GGTGA	2 cut(s)	83, 510
Hpy166II	GTNNAC	2 cut(s)	268, 619
Hpy188I	TCNGA	3 cut(s)	300, 376, 681
Hpy188III	TCNNGA	6 cut(s)	34, 411, 469, 565, 733, 740
Hpy8I	GTNNAC	2 cut(s)	268, 619
HpyAV	CCTTC	4 cut(s)	40, 473, 493, 936
HpyCH4III	ACNGT	2 cut(s)	207, 531
HpyCH4IV	ACGT	1 cut(s)	624
HpyCH4V	TGCA	2 cut(s)	399, 874
HpyF10VI	GCNNNNNNNGC	6 cut(s)	182, 323, 332, 344, 661, 971
HpyF3I	CTNAG	3 cut(s)	35, 331, 718
HpySE526I	ACGT	1 cut(s)	624
Hsp92II	CATG	5 cut(s)	16, 447, 462, 655, 809
HspAI	GCGC	1 cut(s)	694
KpnI	GGTACC	1 cut(s)	944
KroI	GCCGGC	1 cut(s)	670
KroNI	GCCGGC	1 cut(s)	672
Ksp22I	TGATCA	1 cut(s)	88
Kzo9I	GATC	4 cut(s)	88, 295, 685, 775
LmnI	GCTCC	3 cut(s)	434, 849, 871
Lsp1109I	GCAGC	1 cut(s)	322
LweI	GCATC	3 cut(s)	163, 796, 921
MabI	ACCWGGT	1 cut(s)	138
MaeI	CTAG	6 cut(s)	77, 272, 455, 560, 657, 887
MaeII	ACGT	1 cut(s)	624
MaeIII	GTNAC	1 cut(s)	72
MalI	GATC	4 cut(s)	90, 297, 687, 777
MboI	GATC	4 cut(s)	88, 295, 685, 775
MboII	GAAGA	5 cut(s)	36, 100, 103, 889, 892
MfeI	CAATTG	1 cut(s)	754
MhlI	GDGCHC	1 cut(s)	846
MluCI	AATT	4 cut(s)	101, 377, 584, 754
MmeI	TCCRAC	1 cut(s)	942
MnlI	CCTC	9 cut(s)	30, 65, 74, 161, 740, 803, 844, 931, 1009
MroNI	GCCGGC	1 cut(s)	670
MroXI	GAANNNNTTC	1 cut(s)	127
MseI	TTAA	5 cut(s)	362, 498, 539, 581, 611
MspA1I	CMGCKG	3 cut(s)	230, 335, 631
MspI	CCGG	2 cut(s)	572, 671
MspR9I	CCNGG	3 cut(s)	140, 155, 572
MunI	CAATTG	1 cut(s)	754
MvaI	CCWGG	2 cut(s)	140, 155
MwoI	GCNNNNNNNGC	6 cut(s)	182, 323, 332, 344, 661, 971
NaeI	GCCGGC	1 cut(s)	672
NciI	CCSGG	1 cut(s)	572
NdeII	GATC	4 cut(s)	88, 295, 685, 775
NgoMIV	GCCGGC	1 cut(s)	670
NlaIII	CATG	5 cut(s)	16, 447, 462, 655, 809
NlaIV	GGNNCC	5 cut(s)	259, 436, 867, 908, 942
NspI	RCATGY	1 cut(s)	462
PaeI	GCATGC	1 cut(s)	462
PdiI	GCCGGC	1 cut(s)	672
PdmI	GAANNNNTTC	1 cut(s)	127
PfeI	GAWTC	3 cut(s)	414, 736, 890
PflFI	GACNNNGTC	2 cut(s)	140, 623
PkrI	GCNGC	2 cut(s)	337, 558
PpuMI	RGGWCCY	1 cut(s)	812
Psp5II	RGGWCCY	1 cut(s)	812
Psp6I	CCWGG	2 cut(s)	138, 153
PspGI	CCWGG	2 cut(s)	138, 153
PspN4I	GGNNCC	5 cut(s)	259, 436, 867, 908, 942
PspPI	GGNCC	9 cut(s)	61, 258, 554, 598, 634, 663, 714, 812, 907
PspPPI	RGGWCCY	1 cut(s)	812
PstNI	CAGNNNCTG	1 cut(s)	417
PsyI	GACNNNGTC	2 cut(s)	140, 623
PvuII	CAGCTG	3 cut(s)	230, 335, 631
RsaI	GTAC	1 cut(s)	942
RsaNI	GTAC	1 cut(s)	941
SaqAI	TTAA	5 cut(s)	362, 498, 539, 581, 611
SatI	GCNGC	2 cut(s)	336, 557
Sau3AI	GATC	4 cut(s)	88, 295, 685, 775
Sau96I	GGNCC	9 cut(s)	61, 258, 554, 598, 634, 663, 714, 812, 907
ScrFI	CCNGG	3 cut(s)	140, 155, 572
SduI	GDGCHC	1 cut(s)	846
SexAI	ACCWGGT	1 cut(s)	138
SfaNI	GCATC	3 cut(s)	163, 796, 921
SinI	GGWCC	4 cut(s)	61, 258, 812, 907
SpeI	ACTAGT	1 cut(s)	76
SphI	GCATGC	1 cut(s)	462
Sse9I	AATT	4 cut(s)	101, 377, 584, 754
SsiI	CCGC	2 cut(s)	557, 910
SspMI	CTAG	6 cut(s)	77, 272, 455, 560, 657, 887
StyD4I	CCNGG	3 cut(s)	138, 153, 570
StyI	CCWWGG	2 cut(s)	637, 815
TaaI	ACNGT	2 cut(s)	207, 531
TaiI	ACGT	1 cut(s)	627
TaqI	TCGA	4 cut(s)	135, 202, 294, 1014
TasI	AATT	4 cut(s)	101, 377, 584, 754
TauI	GCSGC	1 cut(s)	559
TfiI	GAWTC	3 cut(s)	414, 736, 890
Tru1I	TTAA	5 cut(s)	362, 498, 539, 581, 611
Tru9I	TTAA	5 cut(s)	362, 498, 539, 581, 611
TscAI	CASTG	4 cut(s)	73, 389, 496, 876
TseI	GCWGC	1 cut(s)	335
TspDTI	ATGAA	7 cut(s)	17, 339, 404, 466, 475, 751, 918
TspGWI	ACGGA	1 cut(s)	873
TspRI	CASTG	4 cut(s)	73, 389, 496, 876
Tth111I	GACNNNGTC	2 cut(s)	140, 623
VpaK11BI	GGWCC	4 cut(s)	61, 258, 812, 907
XagI	CCTNNNNNAGG	1 cut(s)	34
XapI	RAATTY	2 cut(s)	101, 377
XceI	RCATGY	1 cut(s)	462
XmiI	GTMKAC	1 cut(s)	267
XmnI	GAANNNNTTC	1 cut(s)	127
XspI	CTAG	6 cut(s)	77, 272, 455, 560, 657, 887

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.