FvH4_1g11430

3-dehydroquinate synthase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
6230664 .. 6233988
3325 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g11430.t1

Sequence Viewer

Length: 1332 bp
ATGGCCTCCACAGCCAACCCCTTCTCCATCTCCCTCTCCTCCAAGCCCACCGCCAAACCCTCACTCTTCAACCCGTCGGAGCAGCTCTCTCTTCGCGTTCAAACCCACGGCGTCGGGCCTCTCCGCTCTTCGAATTGCTCCGTCAAGCTGACCGTAGCGAAATCCAAGTCCAAGATAATGGCGACTTCGGCGCAGGTGGTGGATCAACCGCCGAGTAAAACGGGCGCGGCGGCTATGGAGGTGGTGGAGGTCGGTTTGGGTGATCGGAGCTACCCGATTTACATTGGATCCGGACTCCTAAATCAACCCGAGCTTCTTCAAAGGCATGTTCATGGAAAGAGAGTTCTTGTGGTGACTAACACCAGAGTTGCGCCGTTGTATTTGGAGAAAGTAGTTGATGCTTTAACGAAGGATAACCCAAACGTTACGGTTGAGAGCGTGATTTTGCCGGATGGGGAGAAGTACAAGGACATGGATACTCTTATGAAAGTGTTTGACAAGGCCATTGAGTCAAGACTGGACCGACGATGTACATTTGTTGCTCTCGGAGGCGGTGTGGTTGGTGACATGTGTGGCTATGCTGCTGCTTCTTTCCTTCGCGGTGTTAATTTCATTCAAATTCCAACAACTGTTATGGCTCAGGTTGATTCTTCTGTTGGGGGAAAAACTGGGATAAACCACCCTCTTGGGAAGAACTTGATAGGTGCTTTTTACCAACCCCAGTGTGTGCTTATCGACACAGACACACTTGATACGTTACCAGATAGGGAACTGGCATCAGGACTTGCCGAAGTCATTAAGTACGGACTTATTAGAGATGCAGAATTCTTTGAGTGGCAGGAGAGGAATATGGACGCATTAATAGCAAGGGATCCAAACGCTCTCGCTTATGCTATAAAGCGCTCATGTGAAAACAAGGCCGAGGTTGTGTCCTTGGATGAGAAGGAAGGTGGAGTGAGGGCGACTCTGAACTTGGGTCATACATTTGGCCATGCAATAGAAACAGGGGTTGGCTATGGAAAGTGGTTCCATGGAGAAGCTGTTGCAGCTGGCATGATCATGGCTGTTGATATGTCCTACCGCCTTGGTTGGATTGATGATTCACTTGTGAAGCGAGTTCACAACATTGTAAAACAGGCCAATCTACCTACAAGCCCTCCTGAGTCTGTGACCGTTGAGACGTTCAAAGCTGTGATGGCGGTTGATAAGAAGGTAGCTGATGGGTTGCTAAGGCTCATCCTTCTGAAAGGTCCTTTGGGAAATTGTGTTTTCACAGGTGACTATGATAGAAAGGCCCTGGACGAAACACTCCACGCATTTTGCAAGTCCTGA

Protein Analysis

444

Amino Acids

47.94

Weight (kDa)

7.11

Isoelectric Point (pI)

30.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fe-ADH PF00465 93 - 211 3.7e-06 Iron-containing alcohol dehydrogenase
Fe-ADH_2 PF13685 96 - 252 8.8e-09 Iron-containing alcohol dehydrogenase
DHQ_synthase PF01761 147 - 259 2.4e-48 3-dehydroquinate synthase N-terminal
DHQS_C PF24621 261 - 405 2.1e-51 3-dehydroquinate synthase C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 184
Acc36I ACCTGC 1 cut(s) 184
AccBSI CCGCTC 1 cut(s) 126
AccII CGCG 3 cut(s) 96, 227, 600
AccIII TCCGGA 1 cut(s) 290
AciI CCGC 9 cut(s) 51, 124, 209, 227, 230, 552, 600, 1081, 1199
AclI AACGTT 1 cut(s) 423
AclWI GGATC 5 cut(s) 210, 282, 295, 866, 879
AcoI YGGCCR 1 cut(s) 988
AcsI RAATTY 2 cut(s) 618, 824
AcyI GRCGYC 1 cut(s) 111
AfaI GTAC 3 cut(s) 464, 532, 803
AfeI AGCGCT 1 cut(s) 902
AflIII ACRYGT 1 cut(s) 567
AgsI TTSAA 5 cut(s) 70, 101, 320, 617, 1186
AjnI CCWGG 1 cut(s) 1296
AjuI GAANNNNNNNTTGG 4 cut(s) 993, 1025, 1238, 1270
AloI GAACNNNNNNTCC 2 cut(s) 327, 359
AluBI AGCT 8 cut(s) 85, 148, 270, 313, 1040, 1049, 1190, 1217
AluI AGCT 8 cut(s) 85, 148, 270, 313, 1040, 1049, 1190, 1217
Alw26I GTCTC 1 cut(s) 1172
AlwI GGATC 5 cut(s) 210, 282, 295, 866, 879
Ama87I CYCGRG 1 cut(s) 308
Aor13HI TCCGGA 1 cut(s) 290
Aor51HI AGCGCT 1 cut(s) 902
AoxI GGCC 7 cut(s) 3, 116, 501, 918, 988, 1137, 1293
ApeKI GCWGC 4 cut(s) 82, 581, 584, 1046
ApoI RAATTY 2 cut(s) 618, 824
ArsI GACNNNNNNTTYG 2 cut(s) 152, 184
AseI ATTAAT 1 cut(s) 860
AspLEI GCGC 4 cut(s) 193, 227, 373, 903
AspS9I GGNCC 4 cut(s) 116, 520, 1250, 1294
AsuHPI GGTGA 4 cut(s) 272, 364, 575, 1289
AsuII TTCGAA 1 cut(s) 131
AvaI CYCGRG 1 cut(s) 308
AvaII GGWCC 2 cut(s) 520, 1250
BalI TGGCCA 1 cut(s) 990
BamHI GGATCC 2 cut(s) 287, 871
BbvI GCAGC 4 cut(s) 94, 568, 571, 1058
BccI CCATC 4 cut(s) 35, 446, 1189, 1214
BceAI ACGGC 2 cut(s) 124, 358
BciT130I CCWGG 1 cut(s) 1298
BciVI GTATCC 1 cut(s) 469
BclI TGATCA 1 cut(s) 1056
BcoDI GTCTC 1 cut(s) 1172
BfoI RGCGCY 1 cut(s) 904
BfuAI ACCTGC 1 cut(s) 184
BfuI GTATCC 1 cut(s) 469
BisI GCNGC 6 cut(s) 83, 228, 231, 582, 585, 1047
BlsI GCNGC 6 cut(s) 84, 229, 232, 583, 586, 1048
Bme1390I CCNGG 1 cut(s) 1298
Bme18I GGWCC 2 cut(s) 520, 1250
BmeT110I CYCGRG 1 cut(s) 308
BmgT120I GGNCC 4 cut(s) 116, 520, 1250, 1294
BmiI GGNNCC 3 cut(s) 289, 873, 1028
BmrFI CCNGG 1 cut(s) 1298
BmrI ACTGGG 2 cut(s) 678, 715
BmsI GCATC 3 cut(s) 388, 785, 808
BmuI ACTGGG 2 cut(s) 678, 715
BplI GAGNNNNNCTC 4 cut(s) 71, 103, 949, 981
Bpu10I CCTNAGC 2 cut(s) 639, 1229
Bpu14I TTCGAA 1 cut(s) 131
BsaHI GRCGYC 1 cut(s) 111
BsaJI CCNNGG 6 cut(s) 106, 921, 933, 1030, 1084, 1296
BsaWI WCCGGW 1 cut(s) 290
BsaXI ACNNNNNCTCC 8 cut(s) 8, 38, 540, 570, 1026, 1056, 1141, 1171
Bse1I ACTGG 4 cut(s) 522, 673, 721, 777
BseAI TCCGGA 1 cut(s) 290
BseBI CCWGG 1 cut(s) 1298
BseDI CCNNGG 6 cut(s) 106, 921, 933, 1030, 1084, 1296
BseGI GGATG 3 cut(s) 457, 943, 1236
BseMII CTCAG 2 cut(s) 653, 1152
BseNI ACTGG 4 cut(s) 522, 673, 721, 777
BseRI GAGGAG 1 cut(s) 28
BseXI GCAGC 4 cut(s) 94, 568, 571, 1058
Bsh1236I CGCG 3 cut(s) 96, 227, 600
BshFI GGCC 7 cut(s) 5, 118, 503, 920, 990, 1139, 1295
BsiHKCI CYCGRG 1 cut(s) 308
BsiSI CCGG 2 cut(s) 291, 449
BsmAI GTCTC 1 cut(s) 1172
BsmBI CGTCTC 1 cut(s) 1172
BsnI GGCC 7 cut(s) 5, 118, 503, 920, 990, 1139, 1295
BsoBI CYCGRG 1 cut(s) 308
Bsp119I TTCGAA 1 cut(s) 131
Bsp13I TCCGGA 1 cut(s) 290
Bsp1407I TGTACA 1 cut(s) 530
Bsp143I GATC 5 cut(s) 202, 262, 287, 871, 1056
Bsp19I CCATGG 1 cut(s) 1030
BspACI CCGC 9 cut(s) 51, 124, 209, 227, 230, 552, 600, 1081, 1199
BspANI GGCC 7 cut(s) 5, 118, 503, 920, 990, 1139, 1295
BspCNI CTCAG 2 cut(s) 652, 1153
BspEI TCCGGA 1 cut(s) 290
BspFNI CGCG 3 cut(s) 96, 227, 600
BspLI GGNNCC 3 cut(s) 289, 873, 1028
BspMI ACCTGC 1 cut(s) 184
BspPI GGATC 5 cut(s) 210, 282, 295, 866, 879
BspQI GCTCTTC 1 cut(s) 133
BspT104I TTCGAA 1 cut(s) 131
BsrBI CCGCTC 1 cut(s) 126
BsrGI TGTACA 1 cut(s) 530
BsrI ACTGG 4 cut(s) 522, 673, 721, 777
BssECI CCNNGG 6 cut(s) 106, 921, 933, 1030, 1084, 1296
BssMI GATC 5 cut(s) 202, 262, 287, 871, 1056
BssNI GRCGYC 1 cut(s) 111
BssT1I CCWWGG 3 cut(s) 933, 1030, 1084
Bst2UI CCWGG 1 cut(s) 1298
Bst4CI ACNGT 4 cut(s) 154, 430, 631, 1174
Bst6I CTCTTC 3 cut(s) 71, 96, 133
BstACI GRCGYC 1 cut(s) 111
BstAUI TGTACA 1 cut(s) 530
BstBI TTCGAA 1 cut(s) 131
BstC8I GCNNGC 1 cut(s) 1051
BstDEI CTNAG 3 cut(s) 639, 1161, 1229
BstDSI CCRYGG 2 cut(s) 106, 1030
BstF5I GGATG 3 cut(s) 457, 943, 1236
BstFNI CGCG 3 cut(s) 96, 227, 600
BstH2I RGCGCY 1 cut(s) 904
BstHHI GCGC 4 cut(s) 193, 227, 373, 903
BstKTI GATC 5 cut(s) 205, 265, 290, 874, 1059
BstMAI GTCTC 1 cut(s) 1172
BstMBI GATC 5 cut(s) 202, 262, 287, 871, 1056
BstMWI GCNNNNNNNGC 5 cut(s) 11, 188, 863, 1046, 1196
BstNI CCWGG 1 cut(s) 1298
BstNSI RCATGY 2 cut(s) 329, 571
BstSCI CCNGG 1 cut(s) 1296
BstUI CGCG 3 cut(s) 96, 227, 600
BstV1I GCAGC 4 cut(s) 94, 568, 571, 1058
BstX2I RGATCY 2 cut(s) 287, 871
BstXI CCANNNNNNTGG 2 cut(s) 178, 686
BstYI RGATCY 2 cut(s) 287, 871
BsuI GTATCC 1 cut(s) 469
BsuRI GGCC 7 cut(s) 5, 118, 503, 920, 990, 1139, 1295
BtgI CCRYGG 2 cut(s) 106, 1030
BtsCI GGATG 3 cut(s) 457, 943, 1236
BtsIMutI CAGTG 1 cut(s) 728
BveI ACCTGC 1 cut(s) 184
Cac8I GCNNGC 1 cut(s) 1051
CfoI GCGC 4 cut(s) 193, 227, 373, 903
Cfr13I GGNCC 4 cut(s) 116, 520, 1250, 1294
CseI GACGC 2 cut(s) 100, 863
Csp6I GTAC 3 cut(s) 463, 531, 802
CspCI CAANNNNNGTGG 1 cut(s) 1301
CviAII CATG 9 cut(s) 326, 332, 472, 568, 906, 992, 1031, 1054, 1060
CviQI GTAC 3 cut(s) 463, 531, 802
DdeI CTNAG 3 cut(s) 639, 1161, 1229
DpnI GATC 5 cut(s) 204, 264, 289, 873, 1058
DpnII GATC 5 cut(s) 202, 262, 287, 871, 1056
EaeI YGGCCR 1 cut(s) 988
Eam1104I CTCTTC 3 cut(s) 71, 96, 133
EarI CTCTTC 3 cut(s) 71, 96, 133
Eco130I CCWWGG 3 cut(s) 933, 1030, 1084
Eco47I GGWCC 2 cut(s) 520, 1250
Eco47III AGCGCT 1 cut(s) 902
Eco88I CYCGRG 1 cut(s) 308
EcoO109I RGGNCCY 2 cut(s) 1250, 1294
EcoRI GAATTC 1 cut(s) 824
EcoRII CCWGG 1 cut(s) 1296
EcoT14I CCWWGG 3 cut(s) 933, 1030, 1084
ErhI CCWWGG 3 cut(s) 933, 1030, 1084
Esp3I CGTCTC 1 cut(s) 1172
FaeI CATG 9 cut(s) 329, 335, 475, 571, 909, 995, 1034, 1057, 1063
FatI CATG 9 cut(s) 325, 331, 471, 567, 905, 991, 1030, 1053, 1059
FbaI TGATCA 1 cut(s) 1056
Fnu4HI GCNGC 6 cut(s) 83, 228, 231, 582, 585, 1047
FokI GGATG 3 cut(s) 464, 950, 1223
Fsp4HI GCNGC 6 cut(s) 83, 228, 231, 582, 585, 1047
GlaI GCGC 4 cut(s) 192, 226, 372, 902
GluI GCNGC 6 cut(s) 83, 228, 231, 582, 585, 1047
HaeII RGCGCY 1 cut(s) 904
HaeIII GGCC 7 cut(s) 5, 118, 503, 920, 990, 1139, 1295
HapII CCGG 2 cut(s) 291, 449
HgaI GACGC 2 cut(s) 100, 863
HhaI GCGC 4 cut(s) 193, 227, 373, 903
Hin1I GRCGYC 1 cut(s) 111
Hin1II CATG 9 cut(s) 329, 335, 475, 571, 909, 995, 1034, 1057, 1063
Hin6I GCGC 4 cut(s) 191, 225, 371, 901
HinP1I GCGC 4 cut(s) 191, 225, 371, 901
HinfI GANTC 6 cut(s) 294, 509, 647, 964, 1100, 1163
HpaII CCGG 2 cut(s) 291, 449
HphI GGTGA 4 cut(s) 272, 364, 575, 1289
Hpy166II GTNNAC 1 cut(s) 1120
Hpy188I TCNGA 5 cut(s) 79, 267, 548, 969, 1245
Hpy188III TCNNGA 5 cut(s) 291, 513, 780, 1160, 1329
Hpy8I GTNNAC 1 cut(s) 1120
Hpy99I CGWCG 3 cut(s) 79, 116, 528
HpyAV CCTTC 7 cut(s) 31, 403, 605, 937, 941, 1204, 1250
HpyCH4III ACNGT 4 cut(s) 154, 430, 631, 1174
HpyCH4IV ACGT 3 cut(s) 423, 755, 1181
HpyCH4V TGCA 4 cut(s) 821, 995, 1046, 1323
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 188, 863, 1046, 1196
HpyF3I CTNAG 3 cut(s) 639, 1161, 1229
HpySE526I ACGT 3 cut(s) 423, 755, 1181
Hsp92I GRCGYC 1 cut(s) 111
Hsp92II CATG 9 cut(s) 329, 335, 475, 571, 909, 995, 1034, 1057, 1063
HspAI GCGC 4 cut(s) 191, 225, 371, 901
Kpn2I TCCGGA 1 cut(s) 290
Ksp22I TGATCA 1 cut(s) 1056
Kzo9I GATC 5 cut(s) 202, 262, 287, 871, 1056
LguI GCTCTTC 1 cut(s) 133
LmnI GCTCC 3 cut(s) 79, 143, 267
Lsp1109I GCAGC 4 cut(s) 94, 568, 571, 1058
LweI GCATC 3 cut(s) 388, 785, 808
MaeII ACGT 3 cut(s) 423, 755, 1181
MaeIII GTNAC 6 cut(s) 352, 424, 563, 756, 1168, 1277
MalI GATC 5 cut(s) 204, 264, 289, 873, 1058
MbiI CCGCTC 1 cut(s) 126
MboI GATC 5 cut(s) 202, 262, 287, 871, 1056
MboII GAAGA 6 cut(s) 58, 83, 120, 308, 642, 703
MflI RGATCY 2 cut(s) 287, 871
MlsI TGGCCA 1 cut(s) 990
MluCI AATT 5 cut(s) 133, 607, 618, 824, 1261
MluNI TGGCCA 1 cut(s) 990
MlyI GAGTC 4 cut(s) 288, 518, 958, 1172
MmeI TCCRAC 3 cut(s) 57, 647, 1070
Mox20I TGGCCA 1 cut(s) 990
MroI TCCGGA 1 cut(s) 290
MscI TGGCCA 1 cut(s) 990
MseI TTAA 4 cut(s) 404, 606, 798, 860
MslI CAYNNNNRTG 2 cut(s) 330, 1058
Msp20I TGGCCA 1 cut(s) 990
MspA1I CMGCKG 1 cut(s) 1049
MspI CCGG 2 cut(s) 291, 449
MspR9I CCNGG 1 cut(s) 1298
MvaI CCWGG 1 cut(s) 1298
MvnI CGCG 3 cut(s) 96, 227, 600
MwoI GCNNNNNNNGC 5 cut(s) 11, 188, 863, 1046, 1196
NcoI CCATGG 1 cut(s) 1030
NdeII GATC 5 cut(s) 202, 262, 287, 871, 1056
NlaIII CATG 9 cut(s) 329, 335, 475, 571, 909, 995, 1034, 1057, 1063
NlaIV GGNNCC 3 cut(s) 289, 873, 1028
NmeAIII GCCGAG 2 cut(s) 237, 946
NmuCI GTSAC 4 cut(s) 352, 563, 1168, 1277
NspI RCATGY 2 cut(s) 329, 571
NspV TTCGAA 1 cut(s) 131
PaqCI CACCTGC 1 cut(s) 184
PciI ACATGT 1 cut(s) 567
PciSI GCTCTTC 1 cut(s) 133
PfeI GAWTC 2 cut(s) 647, 1100
PkrI GCNGC 6 cut(s) 84, 229, 232, 583, 586, 1048
PleI GAGTC 4 cut(s) 288, 517, 958, 1171
PpsI GAGTC 4 cut(s) 288, 517, 958, 1171
PpuMI RGGWCCY 1 cut(s) 1250
PscI ACATGT 1 cut(s) 567
PshBI ATTAAT 1 cut(s) 860
Psp1406I AACGTT 1 cut(s) 423
Psp5II RGGWCCY 1 cut(s) 1250
Psp6I CCWGG 1 cut(s) 1296
PspGI CCWGG 1 cut(s) 1296
PspN4I GGNNCC 3 cut(s) 289, 873, 1028
PspPI GGNCC 4 cut(s) 116, 520, 1250, 1294
PspPPI RGGWCCY 1 cut(s) 1250
PsuI RGATCY 2 cut(s) 287, 871
PvuII CAGCTG 1 cut(s) 1049
RsaI GTAC 3 cut(s) 464, 532, 803
RsaNI GTAC 3 cut(s) 463, 531, 802
RseI CAYNNNNRTG 2 cut(s) 330, 1058
SapI GCTCTTC 1 cut(s) 133
SaqAI TTAA 4 cut(s) 404, 606, 798, 860
SatI GCNGC 6 cut(s) 83, 228, 231, 582, 585, 1047
Sau3AI GATC 5 cut(s) 202, 262, 287, 871, 1056
Sau96I GGNCC 4 cut(s) 116, 520, 1250, 1294
SchI GAGTC 4 cut(s) 288, 518, 958, 1172
ScrFI CCNGG 1 cut(s) 1298
SfaNI GCATC 3 cut(s) 388, 785, 808
SfuI TTCGAA 1 cut(s) 131
SinI GGWCC 2 cut(s) 520, 1250
SmiMI CAYNNNNRTG 2 cut(s) 330, 1058
Sse9I AATT 5 cut(s) 133, 607, 618, 824, 1261
SsiI CCGC 9 cut(s) 51, 124, 209, 227, 230, 552, 600, 1081, 1199
StyD4I CCNGG 1 cut(s) 1296
StyI CCWWGG 3 cut(s) 933, 1030, 1084
TaaI ACNGT 4 cut(s) 154, 430, 631, 1174
TaiI ACGT 3 cut(s) 426, 758, 1184
TaqI TCGA 2 cut(s) 131, 735
TaqII GACCGA 1 cut(s) 537
TasI AATT 5 cut(s) 133, 607, 618, 824, 1261
TatI WGTACW 2 cut(s) 462, 530
TauI GCSGC 2 cut(s) 230, 233
TfiI GAWTC 2 cut(s) 647, 1100
Tru1I TTAA 4 cut(s) 404, 606, 798, 860
Tru9I TTAA 4 cut(s) 404, 606, 798, 860
TscAI CASTG 1 cut(s) 728
TseFI GTSAC 4 cut(s) 352, 563, 1168, 1277
TseI GCWGC 4 cut(s) 82, 581, 584, 1046
Tsp45I GTSAC 4 cut(s) 352, 563, 1168, 1277
TspDTI ATGAA 3 cut(s) 320, 500, 601
TspGWI ACGGA 2 cut(s) 130, 819
TspRI CASTG 1 cut(s) 728
VpaK11BI GGWCC 2 cut(s) 520, 1250
VspI ATTAAT 1 cut(s) 860
XapI RAATTY 2 cut(s) 618, 824
XceI RCATGY 2 cut(s) 329, 571
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.