Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0006294

Physical Location & Seq

Genomic Coordinates Reverse (-)

10953463 .. 10956873

Gene Structure 3411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG129500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGAAAGTGTTTGACAAGGCCATTGAGTCAAGACTGGACCGGCGATGTACATTTGTTGCCCTTGGAGGTGGTGTGGTTGGTGACATGTGTGGCTACGCTGCTGCTTCTTTCCTTCGCGGTGTTAATTTCATTCAGATTCCGACAACTGTTATGGCACAGGTTGATTCTTCTGTTGGGGGAAAAACTGGGATCAACCACCCTCTAGGGAAGAACTTGATTGGAGCTTTTTACCAGCCCCAGTGTGTGCTTATCGACACGGACACACTAAATACGTTACCAGATAGGGAGCTGGCATCAGGGCTTGCTGAAGTCATTAAGTACGGACTTATTAGAGATGCAGAATTCTTTGAGTGGCAGGAGAGGAATATGGACGCATTAATAGCAAGGGATCCAAGTGCTCTCGCTTATGCTATAAAGCGCTCATGTGAAAATAAGGCTGAGGTTGTGTCCTTGGATGAGAAAGAAGGTGGACTGAGGGCAACTCTGAATTTGGGCCATACATTTGGCCATGCAATAGAAACAGGGCTTGGCTATGGGAAGTGGTTCCATGGAGAAGCTGTTGCAGCTGGCATGGTCATGGCTGTTGATATGTCCTACCGCCTTGGTTGGATTGATGATTCACTAGTGAAGCGAGTTCACAATATTGTAAAACAGGCCAAGCTACCTATTGGCCCTCCTGAGTCTGTGACTGTGGAGACGTTCAAGGCTGTGATGGCGGTTGATAAGAAGGTAGCTGATGGATTGCTAAGGCTGATCCTTCTGAAAGGTCCTTTGGGAAATTGTGTTTTCACAGGGGACTATGATAGAAAGGCCCTGGACGAAACACTCCATGCATTTTGCAAGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003856 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016838 GO:0019632 GO:0019752 GO:0032787 GO:0033587 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0046394 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

DHQ_synthase

Protein Analysis

282

Amino Acids

30.67

Weight (kDa)

6.32

Isoelectric Point (pI)

31.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHQ_synthase	PF01761	2 - 98	3.7e-43	3-dehydroquinate synthase N-terminal
DHQS_C	PF24621	100 - 244	9.3e-52	3-dehydroquinate synthase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006294)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66120 AT5G66120
fragaria_vesca	FvH4_1g11430
malus_domestica	MD15G1242600.v1.1
prunus_persica	Prupe.7G171600_v2.0.a1
pyrus_communis	pycom02g09850 pycom15g21380
rosa_chinensis	RchiOBHm_Chr2g0099011 RchiOBHm_Chr2g0099021
rosa_laevigata	RLG00000016840
rosa_multiflora	Rmu_co8359771.1_g000001 Rmu_sc0000577.1_g000012 Rmu_sc0009422.1_g000001
rosa_roxburghii	Rroxscaffold_2G00143490 Rroxscaffold_2G00143510
rosa_rugosa	Rorug02G0075600 Rorug02G0075700
rosa_samantha	Rh2AG125000 Rh2AG125100 Rh2BG128200 Rh2BG128300 Rh2CG129200 Rh2CG129300 Rh2DG129400 Rh2DG129500
rosa_wichuraiana	Rw2G009610 Rw2G009620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	117
AciI	CCGC	3 cut(s)	117, 598, 716
AclWI	GGATC	4 cut(s)	197, 383, 396, 748
AcoI	YGGCCR	1 cut(s)	505
AcsI	RAATTY	2 cut(s)	341, 487
AcuI	CTGAAG	1 cut(s)	327
AfaI	GTAC	2 cut(s)	49, 320
AfeI	AGCGCT	1 cut(s)	419
AflIII	ACRYGT	1 cut(s)	84
AgsI	TTSAA	1 cut(s)	703
AhlI	ACTAGT	1 cut(s)	622
AjnI	CCWGG	1 cut(s)	813
AjuI	GAANNNNNNNTTGG	4 cut(s)	510, 542, 755, 787
AluBI	AGCT	6 cut(s)	224, 289, 557, 566, 661, 734
AluI	AGCT	6 cut(s)	224, 289, 557, 566, 661, 734
Alw21I	GWGCWC	1 cut(s)	400
Alw26I	GTCTC	1 cut(s)	689
AlwI	GGATC	4 cut(s)	197, 383, 396, 748
Aor51HI	AGCGCT	1 cut(s)	419
AoxI	GGCC	6 cut(s)	18, 493, 505, 654, 670, 810
ApeKI	GCWGC	3 cut(s)	98, 101, 563
ApoI	RAATTY	2 cut(s)	341, 487
AseI	ATTAAT	1 cut(s)	377
Asp700I	GAANNNNTTC	1 cut(s)	542
AspLEI	GCGC	1 cut(s)	420
AspS9I	GGNCC	5 cut(s)	37, 493, 671, 767, 811
AsuHPI	GGTGA	1 cut(s)	92
AvaII	GGWCC	2 cut(s)	37, 767
BalI	TGGCCA	1 cut(s)	507
BamHI	GGATCC	1 cut(s)	388
Bbv12I	GWGCWC	1 cut(s)	400
BbvCI	CCTCAGC	1 cut(s)	438
BbvI	GCAGC	3 cut(s)	85, 88, 575
BccI	CCATC	2 cut(s)	706, 731
BciT130I	CCWGG	1 cut(s)	815
BcoDI	GTCTC	1 cut(s)	689
BcuI	ACTAGT	1 cut(s)	622
BfaI	CTAG	2 cut(s)	203, 623
BfoI	RGCGCY	1 cut(s)	421
BisI	GCNGC	3 cut(s)	99, 102, 564
BlsI	GCNGC	3 cut(s)	100, 103, 565
Bme1390I	CCNGG	1 cut(s)	815
Bme18I	GGWCC	2 cut(s)	37, 767
BmgT120I	GGNCC	5 cut(s)	37, 493, 671, 767, 811
BmiI	GGNNCC	2 cut(s)	390, 545
BmrFI	CCNGG	1 cut(s)	815
BmrI	ACTGGG	2 cut(s)	195, 232
BmsI	GCATC	2 cut(s)	302, 325
BmuI	ACTGGG	2 cut(s)	195, 232
BplI	GAGNNNNNCTC	2 cut(s)	466, 498
Bpu10I	CCTNAGC	2 cut(s)	438, 746
BsaJI	CCNNGG	5 cut(s)	61, 450, 547, 601, 813
BsaXI	ACNNNNNCTCC	4 cut(s)	57, 87, 543, 573
Bse118I	RCCGGY	1 cut(s)	39
Bse1I	ACTGG	3 cut(s)	39, 190, 238
BseBI	CCWGG	1 cut(s)	815
BseDI	CCNNGG	5 cut(s)	61, 450, 547, 601, 813
BseGI	GGATG	1 cut(s)	460
BseMII	CTCAG	3 cut(s)	429, 464, 669
BseNI	ACTGG	3 cut(s)	39, 190, 238
BseXI	GCAGC	3 cut(s)	85, 88, 575
Bsh1236I	CGCG	1 cut(s)	117
BshFI	GGCC	6 cut(s)	20, 495, 507, 656, 672, 812
BsiHKAI	GWGCWC	1 cut(s)	400
BsiSI	CCGG	1 cut(s)	40
BslFI	GGGAC	1 cut(s)	809
BsmAI	GTCTC	1 cut(s)	689
BsmBI	CGTCTC	1 cut(s)	689
BsmFI	GGGAC	1 cut(s)	809
BsnI	GGCC	6 cut(s)	20, 495, 507, 656, 672, 812
Bsp1286I	GDGCHC	1 cut(s)	400
Bsp1407I	TGTACA	1 cut(s)	47
Bsp143I	GATC	3 cut(s)	189, 388, 753
Bsp19I	CCATGG	1 cut(s)	547
BspACI	CCGC	3 cut(s)	117, 598, 716
BspANI	GGCC	6 cut(s)	20, 495, 507, 656, 672, 812
BspCNI	CTCAG	3 cut(s)	430, 465, 670
BspFNI	CGCG	1 cut(s)	117
BspLI	GGNNCC	2 cut(s)	390, 545
BspPI	GGATC	4 cut(s)	197, 383, 396, 748
BsrFI	RCCGGY	1 cut(s)	39
BsrGI	TGTACA	1 cut(s)	47
BsrI	ACTGG	3 cut(s)	39, 190, 238
BssAI	RCCGGY	1 cut(s)	39
BssECI	CCNNGG	5 cut(s)	61, 450, 547, 601, 813
BssMI	GATC	3 cut(s)	189, 388, 753
BssT1I	CCWWGG	4 cut(s)	61, 450, 547, 601
Bst2UI	CCWGG	1 cut(s)	815
Bst4CI	ACNGT	2 cut(s)	148, 691
BstAUI	TGTACA	1 cut(s)	47
BstC8I	GCNNGC	3 cut(s)	291, 303, 568
BstDEI	CTNAG	4 cut(s)	438, 473, 678, 746
BstDSI	CCRYGG	1 cut(s)	547
BstF5I	GGATG	1 cut(s)	460
BstFNI	CGCG	1 cut(s)	117
BstH2I	RGCGCY	1 cut(s)	421
BstHHI	GCGC	1 cut(s)	420
BstKTI	GATC	3 cut(s)	192, 391, 756
BstMAI	GTCTC	1 cut(s)	689
BstMBI	GATC	3 cut(s)	189, 388, 753
BstMWI	GCNNNNNNNGC	3 cut(s)	380, 563, 713
BstNI	CCWGG	1 cut(s)	815
BstNSI	RCATGY	1 cut(s)	88
BstSCI	CCNGG	1 cut(s)	813
BstUI	CGCG	1 cut(s)	117
BstV1I	GCAGC	3 cut(s)	85, 88, 575
BstX2I	RGATCY	1 cut(s)	388
BstXI	CCANNNNNNTGG	1 cut(s)	503
BstYI	RGATCY	1 cut(s)	388
BsuRI	GGCC	6 cut(s)	20, 495, 507, 656, 672, 812
BtgI	CCRYGG	1 cut(s)	547
BtgZI	GCGATG	1 cut(s)	58
BtsCI	GGATG	1 cut(s)	460
BtsIMutI	CAGTG	1 cut(s)	245
Cac8I	GCNNGC	3 cut(s)	291, 303, 568
CfoI	GCGC	1 cut(s)	420
Cfr10I	RCCGGY	1 cut(s)	39
Cfr13I	GGNCC	5 cut(s)	37, 493, 671, 767, 811
CseI	GACGC	1 cut(s)	380
Csp6I	GTAC	2 cut(s)	48, 319
CviAII	CATG	7 cut(s)	85, 423, 509, 548, 571, 577, 830
CviQI	GTAC	2 cut(s)	48, 319
DdeI	CTNAG	4 cut(s)	438, 473, 678, 746
DpnI	GATC	3 cut(s)	191, 390, 755
DpnII	GATC	3 cut(s)	189, 388, 753
EaeI	YGGCCR	1 cut(s)	505
Eco130I	CCWWGG	4 cut(s)	61, 450, 547, 601
Eco47I	GGWCC	2 cut(s)	37, 767
Eco47III	AGCGCT	1 cut(s)	419
Eco57I	CTGAAG	1 cut(s)	327
EcoO109I	RGGNCCY	2 cut(s)	767, 811
EcoRI	GAATTC	1 cut(s)	341
EcoRII	CCWGG	1 cut(s)	813
EcoT14I	CCWWGG	4 cut(s)	61, 450, 547, 601
EcoT22I	ATGCAT	1 cut(s)	835
ErhI	CCWWGG	4 cut(s)	61, 450, 547, 601
Esp3I	CGTCTC	1 cut(s)	689
FaeI	CATG	7 cut(s)	88, 426, 512, 551, 574, 580, 833
FaqI	GGGAC	1 cut(s)	809
FatI	CATG	7 cut(s)	84, 422, 508, 547, 570, 576, 829
Fnu4HI	GCNGC	3 cut(s)	99, 102, 564
FokI	GGATG	1 cut(s)	467
Fsp4HI	GCNGC	3 cut(s)	99, 102, 564
FspBI	CTAG	2 cut(s)	203, 623
GlaI	GCGC	1 cut(s)	419
GluI	GCNGC	3 cut(s)	99, 102, 564
HaeII	RGCGCY	1 cut(s)	421
HaeIII	GGCC	6 cut(s)	20, 495, 507, 656, 672, 812
HapII	CCGG	1 cut(s)	40
HgaI	GACGC	1 cut(s)	380
HhaI	GCGC	1 cut(s)	420
Hin1II	CATG	7 cut(s)	88, 426, 512, 551, 574, 580, 833
Hin6I	GCGC	1 cut(s)	418
HinP1I	GCGC	1 cut(s)	418
HinfI	GANTC	5 cut(s)	26, 136, 164, 617, 680
HpaII	CCGG	1 cut(s)	40
HphI	GGTGA	1 cut(s)	92
Hpy166II	GTNNAC	2 cut(s)	470, 637
Hpy188I	TCNGA	4 cut(s)	135, 141, 486, 762
Hpy188III	TCNNGA	3 cut(s)	30, 677, 846
Hpy8I	GTNNAC	2 cut(s)	470, 637
HpyAV	CCTTC	4 cut(s)	122, 458, 721, 767
HpyCH4III	ACNGT	2 cut(s)	148, 691
HpyCH4IV	ACGT	2 cut(s)	272, 698
HpyCH4V	TGCA	5 cut(s)	338, 512, 563, 833, 840
HpyF10VI	GCNNNNNNNGC	3 cut(s)	380, 563, 713
HpyF3I	CTNAG	4 cut(s)	438, 473, 678, 746
HpySE526I	ACGT	2 cut(s)	272, 698
Hsp92II	CATG	7 cut(s)	88, 426, 512, 551, 574, 580, 833
HspAI	GCGC	1 cut(s)	418
Kzo9I	GATC	3 cut(s)	189, 388, 753
LmnI	GCTCC	2 cut(s)	221, 286
Lsp1109I	GCAGC	3 cut(s)	85, 88, 575
LweI	GCATC	2 cut(s)	302, 325
MaeI	CTAG	2 cut(s)	203, 623
MaeII	ACGT	2 cut(s)	272, 698
MaeIII	GTNAC	3 cut(s)	80, 273, 685
MalI	GATC	3 cut(s)	191, 390, 755
MboI	GATC	3 cut(s)	189, 388, 753
MboII	GAAGA	2 cut(s)	159, 220
MflI	RGATCY	1 cut(s)	388
MhlI	GDGCHC	1 cut(s)	400
MlsI	TGGCCA	1 cut(s)	507
MluCI	AATT	4 cut(s)	124, 341, 487, 778
MluNI	TGGCCA	1 cut(s)	507
MlyI	GAGTC	2 cut(s)	35, 689
MmeI	TCCRAC	2 cut(s)	164, 587
MnlI	CCTC	6 cut(s)	59, 210, 354, 433, 468, 684
Mox20I	TGGCCA	1 cut(s)	507
Mph1103I	ATGCAT	1 cut(s)	835
MroXI	GAANNNNTTC	1 cut(s)	542
MscI	TGGCCA	1 cut(s)	507
MseI	TTAA	3 cut(s)	123, 315, 377
MslI	CAYNNNNRTG	1 cut(s)	575
Msp20I	TGGCCA	1 cut(s)	507
MspA1I	CMGCKG	1 cut(s)	566
MspI	CCGG	1 cut(s)	40
MspR9I	CCNGG	1 cut(s)	815
MvaI	CCWGG	1 cut(s)	815
MvnI	CGCG	1 cut(s)	117
MwoI	GCNNNNNNNGC	3 cut(s)	380, 563, 713
NcoI	CCATGG	1 cut(s)	547
NdeII	GATC	3 cut(s)	189, 388, 753
NlaIII	CATG	7 cut(s)	88, 426, 512, 551, 574, 580, 833
NlaIV	GGNNCC	2 cut(s)	390, 545
NmuCI	GTSAC	2 cut(s)	80, 685
NsiI	ATGCAT	1 cut(s)	835
NspI	RCATGY	1 cut(s)	88
PciI	ACATGT	1 cut(s)	84
PdmI	GAANNNNTTC	1 cut(s)	542
PfeI	GAWTC	3 cut(s)	136, 164, 617
PkrI	GCNGC	3 cut(s)	100, 103, 565
PleI	GAGTC	2 cut(s)	34, 688
PpsI	GAGTC	2 cut(s)	34, 688
PpuMI	RGGWCCY	1 cut(s)	767
PscI	ACATGT	1 cut(s)	84
PshBI	ATTAAT	1 cut(s)	377
Psp5II	RGGWCCY	1 cut(s)	767
Psp6I	CCWGG	1 cut(s)	813
PspGI	CCWGG	1 cut(s)	813
PspN4I	GGNNCC	2 cut(s)	390, 545
PspPI	GGNCC	5 cut(s)	37, 493, 671, 767, 811
PspPPI	RGGWCCY	1 cut(s)	767
PsuI	RGATCY	1 cut(s)	388
PvuII	CAGCTG	1 cut(s)	566
RsaI	GTAC	2 cut(s)	49, 320
RsaNI	GTAC	2 cut(s)	48, 319
RseI	CAYNNNNRTG	1 cut(s)	575
SaqAI	TTAA	3 cut(s)	123, 315, 377
SatI	GCNGC	3 cut(s)	99, 102, 564
Sau3AI	GATC	3 cut(s)	189, 388, 753
Sau96I	GGNCC	5 cut(s)	37, 493, 671, 767, 811
SchI	GAGTC	2 cut(s)	35, 689
ScrFI	CCNGG	1 cut(s)	815
SduI	GDGCHC	1 cut(s)	400
SfaNI	GCATC	2 cut(s)	302, 325
SinI	GGWCC	2 cut(s)	37, 767
SmiMI	CAYNNNNRTG	1 cut(s)	575
SpeI	ACTAGT	1 cut(s)	622
Sse9I	AATT	4 cut(s)	124, 341, 487, 778
SsiI	CCGC	3 cut(s)	117, 598, 716
SspI	AATATT	1 cut(s)	643
SspMI	CTAG	2 cut(s)	203, 623
StyD4I	CCNGG	1 cut(s)	813
StyI	CCWWGG	4 cut(s)	61, 450, 547, 601
TaaI	ACNGT	2 cut(s)	148, 691
TaiI	ACGT	2 cut(s)	275, 701
TaqI	TCGA	1 cut(s)	252
TasI	AATT	4 cut(s)	124, 341, 487, 778
TatI	WGTACW	1 cut(s)	47
TfiI	GAWTC	3 cut(s)	136, 164, 617
Tru1I	TTAA	3 cut(s)	123, 315, 377
Tru9I	TTAA	3 cut(s)	123, 315, 377
TscAI	CASTG	1 cut(s)	245
TseFI	GTSAC	2 cut(s)	80, 685
TseI	GCWGC	3 cut(s)	98, 101, 563
Tsp45I	GTSAC	2 cut(s)	80, 685
TspDTI	ATGAA	2 cut(s)	17, 118
TspGWI	ACGGA	2 cut(s)	272, 336
TspRI	CASTG	1 cut(s)	245
VpaK11BI	GGWCC	2 cut(s)	37, 767
VspI	ATTAAT	1 cut(s)	377
XapI	RAATTY	2 cut(s)	341, 487
XceI	RCATGY	1 cut(s)	88
XmnI	GAANNNNTTC	1 cut(s)	542
XspI	CTAG	2 cut(s)	203, 623
Zsp2I	ATGCAT	1 cut(s)	835

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.