Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000577.1

Orthogroup ID

OG0006294

Physical Location & Seq

Genomic Coordinates Reverse (-)

38041 .. 39839

Gene Structure 1799 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000577.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

atgactgcagcgctgctcttgccggacggagatcctgggcatcccggacggcgtcaccatgaagatgaaggccaaggtgatcgagatcgaagggatccaaatgctctggcttatgctataaagcgctcatgtgaaatgaaggctgagactgtatccttggatgagctggaaggtggactgagggccatccttaattttggtcatacgtttggccatgtgagttttggtgcaagtactgctagttcttcctcgatctgtaaggaaagttttgcgactgtttgcctaaaccctaaatatcttttgccattgtttaccatgacttttcaggcaatagaaaccgcggttggctatgggaagtggttccatggagaagctgttgcagctggcatggttatgggtgttaatatgtcctaccgccttggttggattgatgagtcacttgtcaagcgagttgacaacattgtggaacaagccaacttacctattggccctcctgaatccatgactcttgagacgttcaggtctttgatggcggtaagaaattctacatgcgctcaatcttgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003856 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016838 GO:0019632 GO:0019752 GO:0032787 GO:0033587 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0046394 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

DHQ_synthase

Protein Analysis

188

Amino Acids

20.47

Weight (kDa)

5.66

Isoelectric Point (pI)

51.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006294)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66120 AT5G66120
fragaria_vesca	FvH4_1g11430
malus_domestica	MD15G1242600.v1.1
prunus_persica	Prupe.7G171600_v2.0.a1
pyrus_communis	pycom02g09850 pycom15g21380
rosa_chinensis	RchiOBHm_Chr2g0099011 RchiOBHm_Chr2g0099021
rosa_laevigata	RLG00000016840
rosa_multiflora	Rmu_co8359771.1_g000001 Rmu_sc0000577.1_g000012 Rmu_sc0009422.1_g000001
rosa_roxburghii	Rroxscaffold_2G00143490 Rroxscaffold_2G00143510
rosa_rugosa	Rorug02G0075600 Rorug02G0075700
rosa_samantha	Rh2AG125000 Rh2AG125100 Rh2BG128200 Rh2BG128300 Rh2CG129200 Rh2CG129300 Rh2DG129400 Rh2DG129500
rosa_wichuraiana	Rw2G009610 Rw2G009620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	520
AccII	CGCG	1 cut(s)	341
AciI	CCGC	4 cut(s)	339, 341, 415, 533
AclWI	GGATC	3 cut(s)	26, 89, 102
AcoI	YGGCCR	1 cut(s)	211
AcsI	RAATTY	1 cut(s)	541
AcyI	GRCGYC	1 cut(s)	52
AfaI	GTAC	1 cut(s)	235
AfeI	AGCGCT	2 cut(s)	12, 125
AjnI	CCWGG	1 cut(s)	34
AjuI	GAANNNNNNNTTGG	2 cut(s)	327, 359
AluBI	AGCT	3 cut(s)	166, 374, 383
AluI	AGCT	3 cut(s)	166, 374, 383
Alw26I	GTCTC	2 cut(s)	140, 506
AlwI	GGATC	3 cut(s)	26, 89, 102
Aor51HI	AGCGCT	2 cut(s)	12, 125
AoxI	GGCC	4 cut(s)	70, 183, 211, 487
ApeKI	GCWGC	3 cut(s)	8, 13, 380
ApoI	RAATTY	1 cut(s)	541
Asp700I	GAANNNNTTC	1 cut(s)	359
AspLEI	GCGC	3 cut(s)	13, 126, 554
AspS9I	GGNCC	2 cut(s)	183, 488
AsuC2I	CCSGG	1 cut(s)	45
AsuHPI	GGTGA	2 cut(s)	47, 89
BalI	TGGCCA	1 cut(s)	213
BamHI	GGATCC	1 cut(s)	94
BbvI	GCAGC	2 cut(s)	20, 392
BccI	CCATC	2 cut(s)	194, 523
BceAI	ACGGC	1 cut(s)	65
BciT130I	CCWGG	1 cut(s)	36
BciVI	GTATCC	1 cut(s)	163
BcnI	CCSGG	1 cut(s)	45
BcoDI	GTCTC	2 cut(s)	140, 506
BfaI	CTAG	1 cut(s)	240
BfmI	CTRYAG	1 cut(s)	6
BfoI	RGCGCY	2 cut(s)	14, 127
BfuI	GTATCC	1 cut(s)	163
BisI	GCNGC	3 cut(s)	9, 14, 381
BlsI	GCNGC	3 cut(s)	10, 15, 382
BmcAI	AGTACT	1 cut(s)	235
Bme1390I	CCNGG	2 cut(s)	36, 45
BmgT120I	GGNCC	2 cut(s)	183, 488
BmiI	GGNNCC	2 cut(s)	96, 362
BmrFI	CCNGG	2 cut(s)	36, 45
BmsI	GCATC	1 cut(s)	49
BpuEI	CTTGAG	1 cut(s)	530
BpuMI	CCSGG	1 cut(s)	45
BsaBI	GATNNNNATC	1 cut(s)	84
BsaHI	GRCGYC	1 cut(s)	52
BsaJI	CCNNGG	6 cut(s)	35, 73, 156, 339, 364, 418
BsaXI	ACNNNNNCTCC	2 cut(s)	360, 390
Bse8I	GATNNNNATC	1 cut(s)	84
BseBI	CCWGG	1 cut(s)	36
BseDI	CCNNGG	6 cut(s)	35, 73, 156, 339, 364, 418
BseGI	GGATG	3 cut(s)	40, 166, 186
BseJI	GATNNNNATC	1 cut(s)	84
BseMII	CTCAG	2 cut(s)	135, 170
BseXI	GCAGC	2 cut(s)	20, 392
Bsh1236I	CGCG	1 cut(s)	341
BshFI	GGCC	4 cut(s)	72, 185, 213, 489
BsiSI	CCGG	2 cut(s)	23, 45
BsmAI	GTCTC	2 cut(s)	140, 506
BsmBI	CGTCTC	1 cut(s)	506
BsnI	GGCC	4 cut(s)	72, 185, 213, 489
Bsp143I	GATC	5 cut(s)	31, 79, 85, 94, 252
Bsp19I	CCATGG	1 cut(s)	364
BspACI	CCGC	4 cut(s)	339, 341, 415, 533
BspANI	GGCC	4 cut(s)	72, 185, 213, 489
BspCNI	CTCAG	2 cut(s)	136, 171
BspFNI	CGCG	1 cut(s)	341
BspLI	GGNNCC	2 cut(s)	96, 362
BspMAI	CTGCAG	1 cut(s)	10
BspPI	GGATC	3 cut(s)	26, 89, 102
BssECI	CCNNGG	6 cut(s)	35, 73, 156, 339, 364, 418
BssMI	GATC	5 cut(s)	31, 79, 85, 94, 252
BssNI	GRCGYC	1 cut(s)	52
BssT1I	CCWWGG	4 cut(s)	73, 156, 364, 418
Bst2UI	CCWGG	1 cut(s)	36
Bst4CI	ACNGT	2 cut(s)	151, 277
BstACI	GRCGYC	1 cut(s)	52
BstAPI	GCANNNNNTGC	1 cut(s)	236
BstC8I	GCNNGC	1 cut(s)	385
BstDEI	CTNAG	2 cut(s)	144, 179
BstDSI	CCRYGG	2 cut(s)	339, 364
BstF5I	GGATG	3 cut(s)	40, 166, 186
BstFNI	CGCG	1 cut(s)	341
BstH2I	RGCGCY	2 cut(s)	14, 127
BstHHI	GCGC	3 cut(s)	13, 126, 554
BstKTI	GATC	5 cut(s)	34, 82, 88, 97, 255
BstMAI	GTCTC	2 cut(s)	140, 506
BstMBI	GATC	5 cut(s)	31, 79, 85, 94, 252
BstMWI	GCNNNNNNNGC	3 cut(s)	19, 236, 380
BstNI	CCWGG	1 cut(s)	36
BstNSI	RCATGY	1 cut(s)	552
BstSCI	CCNGG	2 cut(s)	34, 43
BstSFI	CTRYAG	1 cut(s)	6
BstUI	CGCG	1 cut(s)	341
BstV1I	GCAGC	2 cut(s)	20, 392
BstX2I	RGATCY	2 cut(s)	31, 94
BstYI	RGATCY	2 cut(s)	31, 94
BsuI	GTATCC	1 cut(s)	163
BsuRI	GGCC	4 cut(s)	72, 185, 213, 489
BtgI	CCRYGG	2 cut(s)	339, 364
BtsCI	GGATG	3 cut(s)	40, 166, 186
Cac8I	GCNNGC	1 cut(s)	385
CfoI	GCGC	3 cut(s)	13, 126, 554
Cfr13I	GGNCC	2 cut(s)	183, 488
Cfr42I	CCGCGG	1 cut(s)	342
CseI	GACGC	1 cut(s)	41
Csp6I	GTAC	1 cut(s)	234
CviAII	CATG	8 cut(s)	59, 129, 215, 316, 365, 388, 502, 549
CviQI	GTAC	1 cut(s)	234
DdeI	CTNAG	2 cut(s)	144, 179
DpnI	GATC	5 cut(s)	33, 81, 87, 96, 254
DpnII	GATC	5 cut(s)	31, 79, 85, 94, 252
DrdI	GACNNNNNNGTC	1 cut(s)	520
DseDI	GACNNNNNNGTC	1 cut(s)	520
EaeI	YGGCCR	1 cut(s)	211
Eco130I	CCWWGG	4 cut(s)	73, 156, 364, 418
Eco47III	AGCGCT	2 cut(s)	12, 125
EcoRII	CCWGG	1 cut(s)	34
EcoT14I	CCWWGG	4 cut(s)	73, 156, 364, 418
ErhI	CCWWGG	4 cut(s)	73, 156, 364, 418
Esp3I	CGTCTC	1 cut(s)	506
FaeI	CATG	8 cut(s)	62, 132, 218, 319, 368, 391, 505, 552
FatI	CATG	8 cut(s)	58, 128, 214, 315, 364, 387, 501, 548
Fnu4HI	GCNGC	3 cut(s)	9, 14, 381
FokI	GGATG	3 cut(s)	27, 173, 173
Fsp4HI	GCNGC	3 cut(s)	9, 14, 381
FspBI	CTAG	1 cut(s)	240
GlaI	GCGC	3 cut(s)	12, 125, 553
GluI	GCNGC	3 cut(s)	9, 14, 381
HaeII	RGCGCY	2 cut(s)	14, 127
HaeIII	GGCC	4 cut(s)	72, 185, 213, 489
HapII	CCGG	2 cut(s)	23, 45
HgaI	GACGC	1 cut(s)	41
HhaI	GCGC	3 cut(s)	13, 126, 554
Hin1I	GRCGYC	1 cut(s)	52
Hin1II	CATG	8 cut(s)	62, 132, 218, 319, 368, 391, 505, 552
Hin6I	GCGC	3 cut(s)	11, 124, 552
HinP1I	GCGC	3 cut(s)	11, 124, 552
HincII	GTYRAC	1 cut(s)	454
HindII	GTYRAC	1 cut(s)	454
HinfI	GANTC	3 cut(s)	434, 497, 505
HpaII	CCGG	2 cut(s)	23, 45
HphI	GGTGA	2 cut(s)	47, 89
Hpy166II	GTNNAC	3 cut(s)	176, 312, 454
Hpy188III	TCNNGA	3 cut(s)	83, 494, 509
Hpy8I	GTNNAC	3 cut(s)	176, 312, 454
HpyAV	CCTTC	4 cut(s)	62, 84, 133, 164
HpyCH4III	ACNGT	2 cut(s)	151, 277
HpyCH4IV	ACGT	2 cut(s)	206, 515
HpyCH4V	TGCA	3 cut(s)	8, 230, 380
HpyF10VI	GCNNNNNNNGC	3 cut(s)	19, 236, 380
HpyF3I	CTNAG	2 cut(s)	144, 179
HpySE526I	ACGT	2 cut(s)	206, 515
Hsp92I	GRCGYC	1 cut(s)	52
Hsp92II	CATG	8 cut(s)	62, 132, 218, 319, 368, 391, 505, 552
HspAI	GCGC	3 cut(s)	11, 124, 552
KspI	CCGCGG	1 cut(s)	342
Kzo9I	GATC	5 cut(s)	31, 79, 85, 94, 252
Lsp1109I	GCAGC	2 cut(s)	20, 392
LweI	GCATC	1 cut(s)	49
MaeI	CTAG	1 cut(s)	240
MaeII	ACGT	2 cut(s)	206, 515
MaeIII	GTNAC	2 cut(s)	53, 435
MalI	GATC	5 cut(s)	33, 81, 87, 96, 254
MboI	GATC	5 cut(s)	31, 79, 85, 94, 252
MboII	GAAGA	2 cut(s)	74, 237
MflI	RGATCY	2 cut(s)	31, 94
MlsI	TGGCCA	1 cut(s)	213
MluCI	AATT	2 cut(s)	193, 541
MluNI	TGGCCA	1 cut(s)	213
MlyI	GAGTC	2 cut(s)	443, 499
MmeI	TCCRAC	1 cut(s)	404
MnlI	CCTC	3 cut(s)	174, 259, 501
Mox20I	TGGCCA	1 cut(s)	213
MroXI	GAANNNNTTC	1 cut(s)	359
MscI	TGGCCA	1 cut(s)	213
MseI	TTAA	2 cut(s)	192, 402
MslI	CAYNNNNRTG	2 cut(s)	63, 392
Msp20I	TGGCCA	1 cut(s)	213
MspA1I	CMGCKG	2 cut(s)	341, 383
MspI	CCGG	2 cut(s)	23, 45
MspR9I	CCNGG	2 cut(s)	36, 45
MvaI	CCWGG	1 cut(s)	36
MvnI	CGCG	1 cut(s)	341
MwoI	GCNNNNNNNGC	3 cut(s)	19, 236, 380
NciI	CCSGG	1 cut(s)	45
NcoI	CCATGG	1 cut(s)	364
NdeII	GATC	5 cut(s)	31, 79, 85, 94, 252
NlaIII	CATG	8 cut(s)	62, 132, 218, 319, 368, 391, 505, 552
NlaIV	GGNNCC	2 cut(s)	96, 362
NmuCI	GTSAC	2 cut(s)	53, 435
NspI	RCATGY	1 cut(s)	552
PdmI	GAANNNNTTC	1 cut(s)	359
PfeI	GAWTC	1 cut(s)	497
PflFI	GACNNNGTC	1 cut(s)	51
PfoI	TCCNGGA	1 cut(s)	43
PkrI	GCNGC	3 cut(s)	10, 15, 382
PleI	GAGTC	2 cut(s)	442, 499
PpsI	GAGTC	2 cut(s)	442, 499
Psp6I	CCWGG	1 cut(s)	34
PspGI	CCWGG	1 cut(s)	34
PspN4I	GGNNCC	2 cut(s)	96, 362
PspPI	GGNCC	2 cut(s)	183, 488
PsrI	GAACNNNNNNTAC	2 cut(s)	226, 258
PstI	CTGCAG	1 cut(s)	10
PsuI	RGATCY	2 cut(s)	31, 94
PsyI	GACNNNGTC	1 cut(s)	51
PvuII	CAGCTG	1 cut(s)	383
RsaI	GTAC	1 cut(s)	235
RsaNI	GTAC	1 cut(s)	234
RseI	CAYNNNNRTG	2 cut(s)	63, 392
SacII	CCGCGG	1 cut(s)	342
SaqAI	TTAA	2 cut(s)	192, 402
SatI	GCNGC	3 cut(s)	9, 14, 381
Sau3AI	GATC	5 cut(s)	31, 79, 85, 94, 252
Sau96I	GGNCC	2 cut(s)	183, 488
ScaI	AGTACT	1 cut(s)	235
SchI	GAGTC	2 cut(s)	443, 499
ScrFI	CCNGG	2 cut(s)	36, 45
SetI	ASST	9 cut(s)	79, 168, 175, 209, 376, 385, 484, 518, 524
SfaNI	GCATC	1 cut(s)	49
SfcI	CTRYAG	1 cut(s)	6
Sfr303I	CCGCGG	1 cut(s)	342
SgrBI	CCGCGG	1 cut(s)	342
SmiMI	CAYNNNNRTG	2 cut(s)	63, 392
SmlI	CTYRAG	1 cut(s)	509
SmoI	CTYRAG	1 cut(s)	509
Sse9I	AATT	2 cut(s)	193, 541
SsiI	CCGC	4 cut(s)	339, 341, 415, 533
SspMI	CTAG	1 cut(s)	240
StyD4I	CCNGG	2 cut(s)	34, 43
StyI	CCWWGG	4 cut(s)	73, 156, 364, 418
TaaI	ACNGT	2 cut(s)	151, 277
TaiI	ACGT	2 cut(s)	209, 518
TaqI	TCGA	3 cut(s)	82, 88, 251
TasI	AATT	2 cut(s)	193, 541
TatI	WGTACW	1 cut(s)	233
TfiI	GAWTC	1 cut(s)	497
Tru1I	TTAA	2 cut(s)	192, 402
Tru9I	TTAA	2 cut(s)	192, 402
TseFI	GTSAC	2 cut(s)	53, 435
TseI	GCWGC	3 cut(s)	8, 13, 380
Tsp45I	GTSAC	2 cut(s)	53, 435
TspDTI	ATGAA	3 cut(s)	75, 81, 152
TspGWI	ACGGA	1 cut(s)	42
Tth111I	GACNNNGTC	1 cut(s)	51
XapI	RAATTY	1 cut(s)	541
XceI	RCATGY	1 cut(s)	552
XcmI	CCANNNNNNNNNTGG	1 cut(s)	221
XmnI	GAANNNNTTC	1 cut(s)	359
XspI	CTAG	1 cut(s)	240
ZrmI	AGTACT	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.