Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0006294

Physical Location & Seq

Genomic Coordinates Reverse (-)

10542715 .. 10546087

Gene Structure 3373 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016840

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGGAAATGATGACCCGGCTGGGCCATATGCAAAACTGCATGTTCATGGAAAGAGAGTTCTGGTGGTGACTAACACCACGGTTGCGCCATTGTATTTGGACAAAGTTGTTGATGCTTTGACGAAAGGTAACCCCGATGTTACAGTTGAGAGTGTGATTTTACCGGATGGGGAGAAGTACAAGGACATGGATACTCTTATGAAAGTGTTTGACAAGGCCATTGAGTCAAGACTGGACCGGCGATGTACATTTGTTGCCCTTGGAGGTGGTGTGGTTGGTGACATGTGTGGCTACGCTGCTGCTTCTTTCCTTCGCGGTGTTAATTTCATTCAGATTCCAACAACTGTTATGGCACAGGTTGATTCTTCTGTTGGGGGAAAAACTGGGATCAACCACCCTCTAGGGAAGAACTTGATTGGTGCTTTCTACCAGCCCCAATGTGTGCTTATCGACACGGACACACTAAATACGTTACCAGATAGGGAACTGGCATCAGGGCTTGCTGAAGTCATTAAGTACGGACTTATTAGAGATGCAGAATTCTTTGAGTGGCAGGAGAGGAATATGGACGCATTAATAGCAAGGGATCCAAATGCTCTCGCTTATGCTATAAAGCGCTCATGTGAAAATAAGGCTGAGGTTGTGTCCTTGGATGAGAAGGAAGGTGGACTGAGGGCAACTCTGAATTTGGGCCATACATTTGGCCATGCAATAGAAACAGGGGTTGGCTATGGGAAGTGGTTCCATGGAGAAGCTGTTGCAGCTGGCATGGTCATGGCTGTTGATATGTCCTACCGCCTTGGTTGGATTGATGATTCACTAGTGAAGCGAGTTCACAATATTGTAAAACAGGCCAAGCTACCTACCGGCCCTCCTGAGTCTTTGACTGTGGAGACGTTCAAGGCTGTGATGGCGGTTGATAAGAAGGTAGCTGATGGATTGCTAAGGCTGATCCTTCTGAAAGGTCCTTTGGGAAATTGTGTTTTCACAGGGGACTATGATAGAAAGGCCCTGGACGAAACACTCCATGCATTTTGCAAGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003856 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016838 GO:0019632 GO:0019752 GO:0032787 GO:0033587 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0046394 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

DHQ_synthase

Protein Analysis

349

Amino Acids

37.8

Weight (kDa)

5.94

Isoelectric Point (pI)

26.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fe-ADH_2	PF13685	16 - 157	7.9e-08	Iron-containing alcohol dehydrogenase
DHQ_synthase	PF01761	52 - 164	1.2e-48	3-dehydroquinate synthase N-terminal
DHQS_C	PF24621	166 - 310	9.3e-52	3-dehydroquinate synthase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006294)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66120 AT5G66120
fragaria_vesca	FvH4_1g11430
malus_domestica	MD15G1242600.v1.1
prunus_persica	Prupe.7G171600_v2.0.a1
pyrus_communis	pycom02g09850 pycom15g21380
rosa_chinensis	RchiOBHm_Chr2g0099011 RchiOBHm_Chr2g0099021
rosa_laevigata	RLG00000016840
rosa_multiflora	Rmu_co8359771.1_g000001 Rmu_sc0000577.1_g000012 Rmu_sc0009422.1_g000001
rosa_roxburghii	Rroxscaffold_2G00143490 Rroxscaffold_2G00143510
rosa_rugosa	Rorug02G0075600 Rorug02G0075700
rosa_samantha	Rh2AG125000 Rh2AG125100 Rh2BG128200 Rh2BG128300 Rh2CG129200 Rh2CG129300 Rh2DG129400 Rh2DG129500
rosa_wichuraiana	Rw2G009610 Rw2G009620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	315
AciI	CCGC	3 cut(s)	315, 796, 914
AclWI	GGATC	4 cut(s)	395, 581, 594, 946
AcoI	YGGCCR	1 cut(s)	703
AcsI	RAATTY	2 cut(s)	539, 685
AcuI	CTGAAG	1 cut(s)	525
AfaI	GTAC	3 cut(s)	179, 247, 518
AfeI	AGCGCT	1 cut(s)	617
AflIII	ACRYGT	1 cut(s)	282
AgsI	TTSAA	1 cut(s)	901
AhlI	ACTAGT	1 cut(s)	820
AjnI	CCWGG	1 cut(s)	1011
AjuI	GAANNNNNNNTTGG	4 cut(s)	708, 740, 953, 985
AloI	GAACNNNNNNTCC	2 cut(s)	42, 74
AluBI	AGCT	4 cut(s)	755, 764, 859, 932
AluI	AGCT	4 cut(s)	755, 764, 859, 932
Alw26I	GTCTC	1 cut(s)	887
AlwI	GGATC	4 cut(s)	395, 581, 594, 946
Aor51HI	AGCGCT	1 cut(s)	617
AoxI	GGCC	7 cut(s)	23, 216, 691, 703, 852, 868, 1008
ApeKI	GCWGC	3 cut(s)	296, 299, 761
ApoI	RAATTY	2 cut(s)	539, 685
AseI	ATTAAT	1 cut(s)	575
Asp700I	GAANNNNTTC	1 cut(s)	740
AspLEI	GCGC	2 cut(s)	88, 618
AspS9I	GGNCC	6 cut(s)	23, 235, 691, 869, 965, 1009
AsuC2I	CCSGG	1 cut(s)	17
AsuHPI	GGTGA	2 cut(s)	79, 290
AvaII	GGWCC	2 cut(s)	235, 965
BalI	TGGCCA	1 cut(s)	705
BamHI	GGATCC	1 cut(s)	586
BbvCI	CCTCAGC	1 cut(s)	636
BbvI	GCAGC	3 cut(s)	283, 286, 773
BccI	CCATC	3 cut(s)	161, 904, 929
BciT130I	CCWGG	1 cut(s)	1013
BciVI	GTATCC	1 cut(s)	184
BcnI	CCSGG	1 cut(s)	17
BcoDI	GTCTC	1 cut(s)	887
BcuI	ACTAGT	1 cut(s)	820
BfaI	CTAG	2 cut(s)	401, 821
BfoI	RGCGCY	1 cut(s)	619
BfuI	GTATCC	1 cut(s)	184
BisI	GCNGC	3 cut(s)	297, 300, 762
BlsI	GCNGC	3 cut(s)	298, 301, 763
Bme1390I	CCNGG	2 cut(s)	17, 1013
Bme18I	GGWCC	2 cut(s)	235, 965
BmgT120I	GGNCC	6 cut(s)	23, 235, 691, 869, 965, 1009
BmiI	GGNNCC	2 cut(s)	588, 743
BmrFI	CCNGG	2 cut(s)	17, 1013
BmrI	ACTGGG	1 cut(s)	393
BmsI	GCATC	3 cut(s)	103, 500, 523
BmuI	ACTGGG	1 cut(s)	393
BplI	GAGNNNNNCTC	2 cut(s)	664, 696
Bpu10I	CCTNAGC	2 cut(s)	636, 944
BpuMI	CCSGG	1 cut(s)	17
BsaJI	CCNNGG	6 cut(s)	78, 259, 648, 745, 799, 1011
BsaWI	WCCGGW	1 cut(s)	163
BsaXI	ACNNNNNCTCC	6 cut(s)	255, 285, 741, 771, 856, 886
Bse118I	RCCGGY	2 cut(s)	237, 866
Bse1I	ACTGG	3 cut(s)	237, 388, 492
BseBI	CCWGG	1 cut(s)	1013
BseDI	CCNNGG	6 cut(s)	78, 259, 648, 745, 799, 1011
BseGI	GGATG	2 cut(s)	172, 658
BseMII	CTCAG	3 cut(s)	627, 662, 867
BseNI	ACTGG	3 cut(s)	237, 388, 492
BseXI	GCAGC	3 cut(s)	283, 286, 773
BseYI	CCCAGC	1 cut(s)	20
Bsh1236I	CGCG	1 cut(s)	315
BshFI	GGCC	7 cut(s)	25, 218, 693, 705, 854, 870, 1010
BsiSI	CCGG	4 cut(s)	17, 164, 238, 867
BslFI	GGGAC	1 cut(s)	1007
BsmAI	GTCTC	1 cut(s)	887
BsmBI	CGTCTC	1 cut(s)	887
BsmFI	GGGAC	1 cut(s)	1007
BsnI	GGCC	7 cut(s)	25, 218, 693, 705, 854, 870, 1010
Bsp1407I	TGTACA	1 cut(s)	245
Bsp143I	GATC	3 cut(s)	387, 586, 951
Bsp19I	CCATGG	1 cut(s)	745
BspACI	CCGC	3 cut(s)	315, 796, 914
BspANI	GGCC	7 cut(s)	25, 218, 693, 705, 854, 870, 1010
BspCNI	CTCAG	3 cut(s)	628, 663, 868
BspFNI	CGCG	1 cut(s)	315
BspLI	GGNNCC	2 cut(s)	588, 743
BspPI	GGATC	4 cut(s)	395, 581, 594, 946
BsrFI	RCCGGY	2 cut(s)	237, 866
BsrGI	TGTACA	1 cut(s)	245
BsrI	ACTGG	3 cut(s)	237, 388, 492
BssAI	RCCGGY	2 cut(s)	237, 866
BssECI	CCNNGG	6 cut(s)	78, 259, 648, 745, 799, 1011
BssMI	GATC	3 cut(s)	387, 586, 951
BssT1I	CCWWGG	4 cut(s)	259, 648, 745, 799
Bst2UI	CCWGG	1 cut(s)	1013
Bst4CI	ACNGT	4 cut(s)	82, 145, 346, 889
BstAUI	TGTACA	1 cut(s)	245
BstC8I	GCNNGC	2 cut(s)	501, 766
BstDEI	CTNAG	4 cut(s)	636, 671, 876, 944
BstDSI	CCRYGG	2 cut(s)	78, 745
BstEII	GGTNACC	1 cut(s)	128
BstF5I	GGATG	2 cut(s)	172, 658
BstFNI	CGCG	1 cut(s)	315
BstH2I	RGCGCY	1 cut(s)	619
BstHHI	GCGC	2 cut(s)	88, 618
BstKTI	GATC	3 cut(s)	390, 589, 954
BstMAI	GTCTC	1 cut(s)	887
BstMBI	GATC	3 cut(s)	387, 586, 951
BstMWI	GCNNNNNNNGC	3 cut(s)	578, 761, 911
BstNI	CCWGG	1 cut(s)	1013
BstNSI	RCATGY	2 cut(s)	44, 286
BstPI	GGTNACC	1 cut(s)	128
BstSCI	CCNGG	2 cut(s)	15, 1011
BstUI	CGCG	1 cut(s)	315
BstV1I	GCAGC	3 cut(s)	283, 286, 773
BstX2I	RGATCY	1 cut(s)	586
BstXI	CCANNNNNNTGG	1 cut(s)	701
BstYI	RGATCY	1 cut(s)	586
BsuI	GTATCC	1 cut(s)	184
BsuRI	GGCC	7 cut(s)	25, 218, 693, 705, 854, 870, 1010
BtgI	CCRYGG	2 cut(s)	78, 745
BtgZI	GCGATG	1 cut(s)	256
BtsCI	GGATG	2 cut(s)	172, 658
Cac8I	GCNNGC	2 cut(s)	501, 766
CfoI	GCGC	2 cut(s)	88, 618
Cfr10I	RCCGGY	2 cut(s)	237, 866
Cfr13I	GGNCC	6 cut(s)	23, 235, 691, 869, 965, 1009
CseI	GACGC	1 cut(s)	578
Csp6I	GTAC	3 cut(s)	178, 246, 517
CviQI	GTAC	3 cut(s)	178, 246, 517
DdeI	CTNAG	4 cut(s)	636, 671, 876, 944
DpnI	GATC	3 cut(s)	389, 588, 953
DpnII	GATC	3 cut(s)	387, 586, 951
EaeI	YGGCCR	1 cut(s)	703
Eco130I	CCWWGG	4 cut(s)	259, 648, 745, 799
Eco47I	GGWCC	2 cut(s)	235, 965
Eco47III	AGCGCT	1 cut(s)	617
Eco57I	CTGAAG	1 cut(s)	525
Eco91I	GGTNACC	1 cut(s)	128
EcoO109I	RGGNCCY	2 cut(s)	965, 1009
EcoO65I	GGTNACC	1 cut(s)	128
EcoRI	GAATTC	1 cut(s)	539
EcoRII	CCWGG	1 cut(s)	1011
EcoT14I	CCWWGG	4 cut(s)	259, 648, 745, 799
EcoT22I	ATGCAT	1 cut(s)	1033
ErhI	CCWWGG	4 cut(s)	259, 648, 745, 799
Esp3I	CGTCTC	1 cut(s)	887
FaqI	GGGAC	1 cut(s)	1007
FauNDI	CATATG	1 cut(s)	28
Fnu4HI	GCNGC	3 cut(s)	297, 300, 762
FokI	GGATG	2 cut(s)	179, 665
Fsp4HI	GCNGC	3 cut(s)	297, 300, 762
FspBI	CTAG	2 cut(s)	401, 821
GlaI	GCGC	2 cut(s)	87, 617
GluI	GCNGC	3 cut(s)	297, 300, 762
GsaI	CCCAGC	1 cut(s)	24
HaeII	RGCGCY	1 cut(s)	619
HaeIII	GGCC	7 cut(s)	25, 218, 693, 705, 854, 870, 1010
HapII	CCGG	4 cut(s)	17, 164, 238, 867
HgaI	GACGC	1 cut(s)	578
HhaI	GCGC	2 cut(s)	88, 618
Hin6I	GCGC	2 cut(s)	86, 616
HinP1I	GCGC	2 cut(s)	86, 616
HinfI	GANTC	5 cut(s)	224, 334, 362, 815, 878
HpaII	CCGG	4 cut(s)	17, 164, 238, 867
HphI	GGTGA	2 cut(s)	79, 290
Hpy166II	GTNNAC	2 cut(s)	668, 835
Hpy188I	TCNGA	3 cut(s)	333, 684, 960
Hpy188III	TCNNGA	3 cut(s)	228, 875, 1044
Hpy8I	GTNNAC	2 cut(s)	668, 835
HpyAV	CCTTC	5 cut(s)	320, 652, 656, 919, 965
HpyCH4III	ACNGT	4 cut(s)	82, 145, 346, 889
HpyCH4IV	ACGT	2 cut(s)	470, 896
HpyCH4V	TGCA	7 cut(s)	32, 40, 536, 710, 761, 1031, 1038
HpyF10VI	GCNNNNNNNGC	3 cut(s)	578, 761, 911
HpyF3I	CTNAG	4 cut(s)	636, 671, 876, 944
HpySE526I	ACGT	2 cut(s)	470, 896
HspAI	GCGC	2 cut(s)	86, 616
Kzo9I	GATC	3 cut(s)	387, 586, 951
Lsp1109I	GCAGC	3 cut(s)	283, 286, 773
LweI	GCATC	3 cut(s)	103, 500, 523
MaeI	CTAG	2 cut(s)	401, 821
MaeII	ACGT	2 cut(s)	470, 896
MaeIII	GTNAC	5 cut(s)	67, 128, 139, 278, 471
MalI	GATC	3 cut(s)	389, 588, 953
MboI	GATC	3 cut(s)	387, 586, 951
MboII	GAAGA	2 cut(s)	357, 418
MflI	RGATCY	1 cut(s)	586
MlsI	TGGCCA	1 cut(s)	705
MluCI	AATT	4 cut(s)	322, 539, 685, 976
MluNI	TGGCCA	1 cut(s)	705
MlyI	GAGTC	2 cut(s)	233, 887
MmeI	TCCRAC	2 cut(s)	362, 785
MnlI	CCTC	6 cut(s)	257, 408, 552, 631, 666, 882
Mox20I	TGGCCA	1 cut(s)	705
Mph1103I	ATGCAT	1 cut(s)	1033
MroXI	GAANNNNTTC	1 cut(s)	740
MscI	TGGCCA	1 cut(s)	705
MseI	TTAA	3 cut(s)	321, 513, 575
MslI	CAYNNNNRTG	2 cut(s)	45, 773
Msp20I	TGGCCA	1 cut(s)	705
MspA1I	CMGCKG	1 cut(s)	764
MspI	CCGG	4 cut(s)	17, 164, 238, 867
MspR9I	CCNGG	2 cut(s)	17, 1013
MvaI	CCWGG	1 cut(s)	1013
MvnI	CGCG	1 cut(s)	315
MwoI	GCNNNNNNNGC	3 cut(s)	578, 761, 911
NciI	CCSGG	1 cut(s)	17
NcoI	CCATGG	1 cut(s)	745
NdeI	CATATG	1 cut(s)	28
NdeII	GATC	3 cut(s)	387, 586, 951
NlaIV	GGNNCC	2 cut(s)	588, 743
NmuCI	GTSAC	2 cut(s)	67, 278
NsiI	ATGCAT	1 cut(s)	1033
NspI	RCATGY	2 cut(s)	44, 286
PciI	ACATGT	1 cut(s)	282
PdmI	GAANNNNTTC	1 cut(s)	740
PfeI	GAWTC	3 cut(s)	334, 362, 815
PkrI	GCNGC	3 cut(s)	298, 301, 763
PleI	GAGTC	2 cut(s)	232, 886
PpsI	GAGTC	2 cut(s)	232, 886
PpuMI	RGGWCCY	1 cut(s)	965
PscI	ACATGT	1 cut(s)	282
PshBI	ATTAAT	1 cut(s)	575
Psp5II	RGGWCCY	1 cut(s)	965
Psp6I	CCWGG	1 cut(s)	1011
PspEI	GGTNACC	1 cut(s)	128
PspFI	CCCAGC	1 cut(s)	20
PspGI	CCWGG	1 cut(s)	1011
PspN4I	GGNNCC	2 cut(s)	588, 743
PspPI	GGNCC	6 cut(s)	23, 235, 691, 869, 965, 1009
PspPPI	RGGWCCY	1 cut(s)	965
PsuI	RGATCY	1 cut(s)	586
PvuII	CAGCTG	1 cut(s)	764
RsaI	GTAC	3 cut(s)	179, 247, 518
RsaNI	GTAC	3 cut(s)	178, 246, 517
RseI	CAYNNNNRTG	2 cut(s)	45, 773
SaqAI	TTAA	3 cut(s)	321, 513, 575
SatI	GCNGC	3 cut(s)	297, 300, 762
Sau3AI	GATC	3 cut(s)	387, 586, 951
Sau96I	GGNCC	6 cut(s)	23, 235, 691, 869, 965, 1009
SchI	GAGTC	2 cut(s)	233, 887
ScrFI	CCNGG	2 cut(s)	17, 1013
SfaNI	GCATC	3 cut(s)	103, 500, 523
SinI	GGWCC	2 cut(s)	235, 965
SmiMI	CAYNNNNRTG	2 cut(s)	45, 773
SpeI	ACTAGT	1 cut(s)	820
Sse9I	AATT	4 cut(s)	322, 539, 685, 976
SsiI	CCGC	3 cut(s)	315, 796, 914
SspI	AATATT	1 cut(s)	841
SspMI	CTAG	2 cut(s)	401, 821
StyD4I	CCNGG	2 cut(s)	15, 1011
StyI	CCWWGG	4 cut(s)	259, 648, 745, 799
TaaI	ACNGT	4 cut(s)	82, 145, 346, 889
TaiI	ACGT	2 cut(s)	473, 899
TaqI	TCGA	1 cut(s)	450
TasI	AATT	4 cut(s)	322, 539, 685, 976
TatI	WGTACW	2 cut(s)	177, 245
TfiI	GAWTC	3 cut(s)	334, 362, 815
Tru1I	TTAA	3 cut(s)	321, 513, 575
Tru9I	TTAA	3 cut(s)	321, 513, 575
TseFI	GTSAC	2 cut(s)	67, 278
TseI	GCWGC	3 cut(s)	296, 299, 761
Tsp45I	GTSAC	2 cut(s)	67, 278
TspDTI	ATGAA	3 cut(s)	35, 215, 316
TspGWI	ACGGA	2 cut(s)	470, 534
VpaK11BI	GGWCC	2 cut(s)	235, 965
VspI	ATTAAT	1 cut(s)	575
XapI	RAATTY	2 cut(s)	539, 685
XceI	RCATGY	2 cut(s)	44, 286
XmnI	GAANNNNTTC	1 cut(s)	740
XspI	CTAG	2 cut(s)	401, 821
Zsp2I	ATGCAT	1 cut(s)	1033

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.