Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0006294

Physical Location & Seq

Genomic Coordinates Reverse (-)

11347418 .. 11361818

Gene Structure 14401 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG125000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGAAAGTGTTTGACAAGGCTATTGAGTCGAGACTTGACCGGCGATGTACATTTGTTACCCTTGGAGGTGGTGTGATTGGTGACACGTGTGACTTTGCCGCTGCTTCTTTCCTTCGCGGTGTTAATTTCATTCAGATTCCGACGACTGTTATGGCACAGGAGAGGAATATGGATGCATTAATATCAAGGGATCCAAATGCTCTGGCTTATGCTATAAAGCGCTCATGTGAAATGAAGGCTGAGATTGTATCCTTGGATGAGCTGGAAGGTGGACTGAGGGCCATTCTTAATTTTGGTCATACGTTTGGCCATGCAATAGAAACCGCGGTTGGCTATGGGAAGTGGTTCCATGGAGAAGCTGTTGCAGCTGGCATGTGGATCCCAGAATTGAAGCACTATGCGCCTGGTGTTCCAATCATTCTTGTTGGAACCAAGCTTGATCTGCGGGATGACAAGCAGTTCTTTATTGACCATCCGGGTGCTGTGCCTATTACTACCGCTCAAGGAGAGGAGCTCAGGAAGCTAATTGGAGCACCAGCATACATTGAGTGCAGTTCAAAAACACAGCAGAATGTGAAAGGGGTGTTCGATGCAGCCATAAGGGTTGTCCTTCAACCTCCCAAGCAGAAGAAAAAGAAAGGGAAAGCGCAGAAGGCATGCTCCATATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003856 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016838 GO:0019632 GO:0019752 GO:0032787 GO:0033587 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0046394 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

DHQ_synthase

Protein Analysis

223

Amino Acids

24.34

Weight (kDa)

8.93

Isoelectric Point (pI)

49.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHQ_synthase	PF01761	2 - 53	1.1e-15	3-dehydroquinate synthase N-terminal
DHQS_C	PF24621	52 - 126	4.9e-29	3-dehydroquinate synthase C-terminal
Ras	PF00071	125 - 204	1.4e-10	Ras family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006294)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66120 AT5G66120
fragaria_vesca	FvH4_1g11430
malus_domestica	MD15G1242600.v1.1
prunus_persica	Prupe.7G171600_v2.0.a1
pyrus_communis	pycom02g09850 pycom15g21380
rosa_chinensis	RchiOBHm_Chr2g0099011 RchiOBHm_Chr2g0099021
rosa_laevigata	RLG00000016840
rosa_multiflora	Rmu_co8359771.1_g000001 Rmu_sc0000577.1_g000012 Rmu_sc0009422.1_g000001
rosa_roxburghii	Rroxscaffold_2G00143490 Rroxscaffold_2G00143510
rosa_rugosa	Rorug02G0075600 Rorug02G0075700
rosa_samantha	Rh2AG125000 Rh2AG125100 Rh2BG128200 Rh2BG128300 Rh2CG129200 Rh2CG129300 Rh2DG129400 Rh2DG129500
rosa_wichuraiana	Rw2G009610 Rw2G009620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	500
AccII	CGCG	2 cut(s)	117, 326
AciI	CCGC	6 cut(s)	99, 117, 324, 326, 445, 498
AclWI	GGATC	4 cut(s)	185, 198, 373, 386
AcoI	YGGCCR	1 cut(s)	307
AcvI	CACGTG	1 cut(s)	87
AfaI	GTAC	1 cut(s)	49
AfeI	AGCGCT	1 cut(s)	221
AflIII	ACRYGT	2 cut(s)	84, 86
AgsI	TTSAA	3 cut(s)	391, 558, 614
AjnI	CCWGG	1 cut(s)	403
AjuI	GAANNNNNNNTTGG	2 cut(s)	312, 344
AluBI	AGCT	6 cut(s)	262, 359, 368, 436, 514, 523
AluI	AGCT	6 cut(s)	262, 359, 368, 436, 514, 523
Alw21I	GWGCWC	2 cut(s)	516, 535
Alw26I	GTCTC	1 cut(s)	25
AlwI	GGATC	4 cut(s)	185, 198, 373, 386
Aor51HI	AGCGCT	1 cut(s)	221
AoxI	GGCC	2 cut(s)	279, 307
ApeKI	GCWGC	3 cut(s)	101, 365, 593
AseI	ATTAAT	1 cut(s)	179
Asp700I	GAANNNNTTC	1 cut(s)	344
AspLEI	GCGC	3 cut(s)	222, 403, 649
AspS9I	GGNCC	1 cut(s)	279
AsuC2I	CCSGG	1 cut(s)	477
AsuHPI	GGTGA	1 cut(s)	92
BalI	TGGCCA	1 cut(s)	309
BamHI	GGATCC	2 cut(s)	190, 378
BanII	GRGCYC	1 cut(s)	516
BbrPI	CACGTG	1 cut(s)	87
Bbv12I	GWGCWC	2 cut(s)	516, 535
BbvI	GCAGC	3 cut(s)	88, 377, 605
BccI	CCATC	1 cut(s)	480
BciT130I	CCWGG	1 cut(s)	405
BciVI	GTATCC	1 cut(s)	259
BcnI	CCSGG	1 cut(s)	477
BcoDI	GTCTC	1 cut(s)	25
BfoI	RGCGCY	1 cut(s)	223
BfuI	GTATCC	1 cut(s)	259
BisI	GCNGC	4 cut(s)	99, 102, 366, 594
BlsI	GCNGC	4 cut(s)	100, 103, 367, 595
Bme1390I	CCNGG	2 cut(s)	405, 477
BmgT120I	GGNCC	1 cut(s)	279
BmiI	GGNNCC	4 cut(s)	192, 347, 380, 430
BmrFI	CCNGG	2 cut(s)	405, 477
BmsI	GCATC	2 cut(s)	163, 580
BplI	GAGNNNNNCTC	2 cut(s)	498, 530
Bpu10I	CCTNAGC	1 cut(s)	515
BpuEI	CTTGAG	1 cut(s)	486
BpuMI	CCSGG	1 cut(s)	477
BsaAI	YACGTR	1 cut(s)	87
BsaJI	CCNNGG	4 cut(s)	61, 252, 324, 349
BsaXI	ACNNNNNCTCC	4 cut(s)	57, 87, 345, 375
Bse118I	RCCGGY	1 cut(s)	39
BseBI	CCWGG	1 cut(s)	405
BseDI	CCNNGG	4 cut(s)	61, 252, 324, 349
BseGI	GGATG	4 cut(s)	178, 262, 454, 472
BseMII	CTCAG	3 cut(s)	231, 266, 529
BseRI	GAGGAG	1 cut(s)	524
BseXI	GCAGC	3 cut(s)	88, 377, 605
BsgI	GTGCAG	1 cut(s)	571
Bsh1236I	CGCG	2 cut(s)	117, 326
BshFI	GGCC	2 cut(s)	281, 309
BsiHKAI	GWGCWC	2 cut(s)	516, 535
BsiSI	CCGG	2 cut(s)	40, 476
BsmAI	GTCTC	1 cut(s)	25
BsnI	GGCC	2 cut(s)	281, 309
Bsp1286I	GDGCHC	2 cut(s)	516, 535
Bsp1407I	TGTACA	1 cut(s)	47
Bsp143I	GATC	3 cut(s)	190, 378, 439
Bsp19I	CCATGG	1 cut(s)	349
BspACI	CCGC	6 cut(s)	99, 117, 324, 326, 445, 498
BspANI	GGCC	2 cut(s)	281, 309
BspCNI	CTCAG	3 cut(s)	232, 267, 528
BspFNI	CGCG	2 cut(s)	117, 326
BspLI	GGNNCC	4 cut(s)	192, 347, 380, 430
BspPI	GGATC	4 cut(s)	185, 198, 373, 386
BsrBI	CCGCTC	1 cut(s)	500
BsrFI	RCCGGY	1 cut(s)	39
BsrGI	TGTACA	1 cut(s)	47
BssAI	RCCGGY	1 cut(s)	39
BssECI	CCNNGG	4 cut(s)	61, 252, 324, 349
BssMI	GATC	3 cut(s)	190, 378, 439
BssT1I	CCWWGG	3 cut(s)	61, 252, 349
Bst2UI	CCWGG	1 cut(s)	405
Bst4CI	ACNGT	1 cut(s)	148
BstAUI	TGTACA	1 cut(s)	47
BstBAI	YACGTR	1 cut(s)	87
BstC8I	GCNNGC	2 cut(s)	370, 658
BstDEI	CTNAG	3 cut(s)	240, 275, 515
BstDSI	CCRYGG	2 cut(s)	324, 349
BstF5I	GGATG	4 cut(s)	178, 262, 454, 472
BstFNI	CGCG	2 cut(s)	117, 326
BstH2I	RGCGCY	1 cut(s)	223
BstHHI	GCGC	3 cut(s)	222, 403, 649
BstKTI	GATC	3 cut(s)	193, 381, 442
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	3 cut(s)	190, 378, 439
BstMWI	GCNNNNNNNGC	5 cut(s)	365, 400, 442, 520, 653
BstNI	CCWGG	1 cut(s)	405
BstNSI	RCATGY	2 cut(s)	376, 660
BstSCI	CCNGG	2 cut(s)	403, 475
BstUI	CGCG	2 cut(s)	117, 326
BstV1I	GCAGC	3 cut(s)	88, 377, 605
BstX2I	RGATCY	2 cut(s)	190, 378
BstYI	RGATCY	2 cut(s)	190, 378
BsuI	GTATCC	1 cut(s)	259
BsuRI	GGCC	2 cut(s)	281, 309
BtgI	CCRYGG	2 cut(s)	324, 349
BtgZI	GCGATG	1 cut(s)	58
BtsCI	GGATG	4 cut(s)	178, 262, 454, 472
Cac8I	GCNNGC	2 cut(s)	370, 658
CfoI	GCGC	3 cut(s)	222, 403, 649
Cfr10I	RCCGGY	1 cut(s)	39
Cfr13I	GGNCC	1 cut(s)	279
Cfr42I	CCGCGG	1 cut(s)	327
Csp6I	GTAC	1 cut(s)	48
CviAII	CATG	5 cut(s)	225, 311, 350, 373, 657
CviQI	GTAC	1 cut(s)	48
DdeI	CTNAG	3 cut(s)	240, 275, 515
DpnI	GATC	3 cut(s)	192, 380, 441
DpnII	GATC	3 cut(s)	190, 378, 439
EaeI	YGGCCR	1 cut(s)	307
Ecl136II	GAGCTC	1 cut(s)	514
Eco130I	CCWWGG	3 cut(s)	61, 252, 349
Eco24I	GRGCYC	1 cut(s)	516
Eco47III	AGCGCT	1 cut(s)	221
Eco53kI	GAGCTC	1 cut(s)	514
Eco72I	CACGTG	1 cut(s)	87
EcoICRI	GAGCTC	1 cut(s)	514
EcoRII	CCWGG	1 cut(s)	403
EcoT14I	CCWWGG	3 cut(s)	61, 252, 349
EcoT22I	ATGCAT	1 cut(s)	178
EcoT38I	GRGCYC	1 cut(s)	516
ErhI	CCWWGG	3 cut(s)	61, 252, 349
FaeI	CATG	5 cut(s)	228, 314, 353, 376, 660
FalI	AAGNNNNNCTT	2 cut(s)	446, 478
FatI	CATG	5 cut(s)	224, 310, 349, 372, 656
FauI	CCCGC	1 cut(s)	438
Fnu4HI	GCNGC	4 cut(s)	99, 102, 366, 594
FokI	GGATG	4 cut(s)	185, 269, 459, 461
FriOI	GRGCYC	1 cut(s)	516
Fsp4HI	GCNGC	4 cut(s)	99, 102, 366, 594
GlaI	GCGC	3 cut(s)	221, 402, 648
GluI	GCNGC	4 cut(s)	99, 102, 366, 594
HaeII	RGCGCY	1 cut(s)	223
HaeIII	GGCC	2 cut(s)	281, 309
HapII	CCGG	2 cut(s)	40, 476
HhaI	GCGC	3 cut(s)	222, 403, 649
Hin1II	CATG	5 cut(s)	228, 314, 353, 376, 660
Hin6I	GCGC	3 cut(s)	220, 401, 647
HinP1I	GCGC	3 cut(s)	220, 401, 647
HindIII	AAGCTT	1 cut(s)	434
HinfI	GANTC	2 cut(s)	26, 136
HpaII	CCGG	2 cut(s)	40, 476
HphI	GGTGA	1 cut(s)	92
Hpy166II	GTNNAC	1 cut(s)	272
Hpy188I	TCNGA	2 cut(s)	135, 141
Hpy188III	TCNNGA	2 cut(s)	30, 517
Hpy8I	GTNNAC	1 cut(s)	272
Hpy99I	CGWCG	1 cut(s)	145
HpyAV	CCTTC	5 cut(s)	122, 229, 260, 620, 646
HpyCH4III	ACNGT	1 cut(s)	148
HpyCH4IV	ACGT	2 cut(s)	86, 302
HpyCH4V	TGCA	5 cut(s)	176, 314, 365, 552, 593
HpyF10VI	GCNNNNNNNGC	5 cut(s)	365, 400, 442, 520, 653
HpyF3I	CTNAG	3 cut(s)	240, 275, 515
HpySE526I	ACGT	2 cut(s)	86, 302
Hsp92II	CATG	5 cut(s)	228, 314, 353, 376, 660
HspAI	GCGC	3 cut(s)	220, 401, 647
KspI	CCGCGG	1 cut(s)	327
Kzo9I	GATC	3 cut(s)	190, 378, 439
LmnI	GCTCC	3 cut(s)	511, 530, 665
Lsp1109I	GCAGC	3 cut(s)	88, 377, 605
LweI	GCATC	2 cut(s)	163, 580
MaeII	ACGT	2 cut(s)	86, 302
MaeIII	GTNAC	3 cut(s)	55, 80, 89
MalI	GATC	3 cut(s)	192, 380, 441
MbiI	CCGCTC	1 cut(s)	500
MboI	GATC	3 cut(s)	190, 378, 439
MboII	GAAGA	1 cut(s)	640
MflI	RGATCY	2 cut(s)	190, 378
MhlI	GDGCHC	2 cut(s)	516, 535
MlsI	TGGCCA	1 cut(s)	309
MluCI	AATT	4 cut(s)	124, 289, 386, 525
MluNI	TGGCCA	1 cut(s)	309
MlyI	GAGTC	1 cut(s)	35
MmeI	TCCRAC	2 cut(s)	164, 406
MnlI	CCTC	5 cut(s)	59, 156, 270, 502, 627
Mox20I	TGGCCA	1 cut(s)	309
Mph1103I	ATGCAT	1 cut(s)	178
MroXI	GAANNNNTTC	1 cut(s)	344
MscI	TGGCCA	1 cut(s)	309
MseI	TTAA	3 cut(s)	123, 179, 288
MslI	CAYNNNNRTG	1 cut(s)	477
Msp20I	TGGCCA	1 cut(s)	309
MspA1I	CMGCKG	3 cut(s)	101, 326, 368
MspI	CCGG	2 cut(s)	40, 476
MspR9I	CCNGG	2 cut(s)	405, 477
MvaI	CCWGG	1 cut(s)	405
MvnI	CGCG	2 cut(s)	117, 326
MwoI	GCNNNNNNNGC	5 cut(s)	365, 400, 442, 520, 653
NciI	CCSGG	1 cut(s)	477
NcoI	CCATGG	1 cut(s)	349
NdeII	GATC	3 cut(s)	190, 378, 439
NlaIII	CATG	5 cut(s)	228, 314, 353, 376, 660
NlaIV	GGNNCC	4 cut(s)	192, 347, 380, 430
NmuCI	GTSAC	2 cut(s)	80, 89
NsiI	ATGCAT	1 cut(s)	178
NspI	RCATGY	2 cut(s)	376, 660
PaeI	GCATGC	1 cut(s)	660
PdmI	GAANNNNTTC	1 cut(s)	344
PfeI	GAWTC	1 cut(s)	136
PkrI	GCNGC	4 cut(s)	100, 103, 367, 595
PleI	GAGTC	1 cut(s)	34
PmaCI	CACGTG	1 cut(s)	87
PmlI	CACGTG	1 cut(s)	87
PpsI	GAGTC	1 cut(s)	34
Ppu21I	YACGTR	1 cut(s)	87
PshBI	ATTAAT	1 cut(s)	179
Psp124BI	GAGCTC	1 cut(s)	516
Psp6I	CCWGG	1 cut(s)	403
PspCI	CACGTG	1 cut(s)	87
PspGI	CCWGG	1 cut(s)	403
PspN4I	GGNNCC	4 cut(s)	192, 347, 380, 430
PspPI	GGNCC	1 cut(s)	279
PsuI	RGATCY	2 cut(s)	190, 378
PvuII	CAGCTG	1 cut(s)	368
RsaI	GTAC	1 cut(s)	49
RsaNI	GTAC	1 cut(s)	48
RseI	CAYNNNNRTG	1 cut(s)	477
SacI	GAGCTC	1 cut(s)	516
SacII	CCGCGG	1 cut(s)	327
SaqAI	TTAA	3 cut(s)	123, 179, 288
SatI	GCNGC	4 cut(s)	99, 102, 366, 594
Sau3AI	GATC	3 cut(s)	190, 378, 439
Sau96I	GGNCC	1 cut(s)	279
SchI	GAGTC	1 cut(s)	35
ScrFI	CCNGG	2 cut(s)	405, 477
SduI	GDGCHC	2 cut(s)	516, 535
SfaNI	GCATC	2 cut(s)	163, 580
Sfr303I	CCGCGG	1 cut(s)	327
SgrBI	CCGCGG	1 cut(s)	327
SmiMI	CAYNNNNRTG	1 cut(s)	477
SmlI	CTYRAG	1 cut(s)	501
SmoI	CTYRAG	1 cut(s)	501
SphI	GCATGC	1 cut(s)	660
Sse9I	AATT	4 cut(s)	124, 289, 386, 525
SsiI	CCGC	6 cut(s)	99, 117, 324, 326, 445, 498
SstI	GAGCTC	1 cut(s)	516
StyD4I	CCNGG	2 cut(s)	403, 475
StyI	CCWWGG	3 cut(s)	61, 252, 349
TaaI	ACNGT	1 cut(s)	148
TaiI	ACGT	2 cut(s)	89, 305
TaqI	TCGA	2 cut(s)	29, 588
TasI	AATT	4 cut(s)	124, 289, 386, 525
TatI	WGTACW	1 cut(s)	47
TauI	GCSGC	1 cut(s)	101
TfiI	GAWTC	1 cut(s)	136
Tru1I	TTAA	3 cut(s)	123, 179, 288
Tru9I	TTAA	3 cut(s)	123, 179, 288
TseFI	GTSAC	2 cut(s)	80, 89
TseI	GCWGC	3 cut(s)	101, 365, 593
Tsp45I	GTSAC	2 cut(s)	80, 89
TspDTI	ATGAA	3 cut(s)	17, 118, 248
VspI	ATTAAT	1 cut(s)	179
XceI	RCATGY	2 cut(s)	376, 660
XmnI	GAANNNNTTC	1 cut(s)	344
Zsp2I	ATGCAT	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.