Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009422.1

Orthogroup ID

OG0006294

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 752

Gene Structure 751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009422.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 443 bp

atggcctccaccgccaaccccttctccatctccctctcctccaagcccactgccaaaccctcactcttcaacccctcggagctctctcttcgggtccagacccccggcgtcgcggctctccggtcttccttcgcttccaattactccgttaagcttagcctagcgaaatcgaagtcgaagataatggcgaattcggcgcagctggtggatcaaccgccgagtaaaacgggtccggcggctccggtcgttgtggatgtggatttgggcaatcggagctacccgatttacattggatccggacttcttgaccaacccgagcttctccaaaggcatgttcatggaaagagagtgctggtggtgactaacaccacggttgcgccattgtatttggacaaagttgttgatgctttgacgaaagataaccccaatgttacagttgagag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003856 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016838 GO:0019632 GO:0019752 GO:0032787 GO:0033587 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0046394 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

DHQ_synthase

Protein Analysis

147

Amino Acids

15.61

Weight (kDa)

9.6

Isoelectric Point (pI)

32.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006294)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66120 AT5G66120
fragaria_vesca	FvH4_1g11430
malus_domestica	MD15G1242600.v1.1
prunus_persica	Prupe.7G171600_v2.0.a1
pyrus_communis	pycom02g09850 pycom15g21380
rosa_chinensis	RchiOBHm_Chr2g0099011 RchiOBHm_Chr2g0099021
rosa_laevigata	RLG00000016840
rosa_multiflora	Rmu_co8359771.1_g000001 Rmu_sc0000577.1_g000012 Rmu_sc0009422.1_g000001
rosa_roxburghii	Rroxscaffold_2G00143490 Rroxscaffold_2G00143510
rosa_rugosa	Rorug02G0075600 Rorug02G0075700
rosa_samantha	Rh2AG125000 Rh2AG125100 Rh2BG128200 Rh2BG128300 Rh2CG129200 Rh2CG129300 Rh2DG129400 Rh2DG129500
rosa_wichuraiana	Rw2G009610 Rw2G009620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	113
AccIII	TCCGGA	1 cut(s)	296
AciI	CCGC	4 cut(s)	12, 113, 215, 236
AclWI	GGATC	3 cut(s)	216, 288, 301
AcsI	RAATTY	1 cut(s)	190
AcyI	GRCGYC	1 cut(s)	108
AgsI	TTSAA	1 cut(s)	70
AjuI	GAANNNNNNNTTGG	4 cut(s)	303, 318, 335, 350
AluBI	AGCT	5 cut(s)	82, 154, 202, 276, 319
AluI	AGCT	5 cut(s)	82, 154, 202, 276, 319
Alw21I	GWGCWC	1 cut(s)	84
AlwI	GGATC	3 cut(s)	216, 288, 301
Ama87I	CYCGRG	1 cut(s)	314
Aor13HI	TCCGGA	1 cut(s)	296
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	199
ApoI	RAATTY	1 cut(s)	190
ArsI	GACNNNNNNTTYG	2 cut(s)	158, 190
AspLEI	GCGC	2 cut(s)	199, 379
AspS9I	GGNCC	2 cut(s)	94, 230
AsuC2I	CCSGG	1 cut(s)	105
AsuHPI	GGTGA	1 cut(s)	370
AvaI	CYCGRG	1 cut(s)	314
AvaII	GGWCC	2 cut(s)	94, 230
BamHI	GGATCC	1 cut(s)	293
BanII	GRGCYC	1 cut(s)	84
BbsI	GAAGAC	1 cut(s)	117
Bbv12I	GWGCWC	1 cut(s)	84
BbvI	GCAGC	1 cut(s)	211
BccI	CCATC	1 cut(s)	35
BcnI	CCSGG	1 cut(s)	105
BfaI	CTAG	1 cut(s)	161
BisI	GCNGC	3 cut(s)	114, 200, 237
BlpI	GCTNAGC	1 cut(s)	155
BlsI	GCNGC	3 cut(s)	115, 201, 238
Bme1390I	CCNGG	1 cut(s)	105
Bme18I	GGWCC	2 cut(s)	94, 230
BmeT110I	CYCGRG	1 cut(s)	314
BmgT120I	GGNCC	2 cut(s)	94, 230
BmiI	GGNNCC	4 cut(s)	95, 231, 240, 295
BmrFI	CCNGG	1 cut(s)	105
BmsI	GCATC	1 cut(s)	394
BpiI	GAAGAC	1 cut(s)	117
Bpu1102I	GCTNAGC	1 cut(s)	155
BpuMI	CCSGG	1 cut(s)	105
BsaHI	GRCGYC	1 cut(s)	108
BsaJI	CCNNGG	3 cut(s)	75, 103, 369
BsaWI	WCCGGW	3 cut(s)	120, 241, 296
BsaXI	ACNNNNNCTCC	2 cut(s)	8, 38
BseAI	TCCGGA	1 cut(s)	296
BseDI	CCNNGG	3 cut(s)	75, 103, 369
BseGI	GGATG	1 cut(s)	259
BseRI	GAGGAG	1 cut(s)	28
BseXI	GCAGC	1 cut(s)	211
Bsh1236I	CGCG	1 cut(s)	113
Bsh1285I	CGRYCG	1 cut(s)	246
BshFI	GGCC	1 cut(s)	5
BsiEI	CGRYCG	1 cut(s)	246
BsiHKAI	GWGCWC	1 cut(s)	84
BsiHKCI	CYCGRG	1 cut(s)	314
BsiSI	CCGG	5 cut(s)	105, 121, 233, 242, 297
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	314
Bsp1286I	GDGCHC	1 cut(s)	84
Bsp13I	TCCGGA	1 cut(s)	296
Bsp143I	GATC	2 cut(s)	208, 293
Bsp1720I	GCTNAGC	1 cut(s)	155
BspACI	CCGC	4 cut(s)	12, 113, 215, 236
BspANI	GGCC	1 cut(s)	5
BspEI	TCCGGA	1 cut(s)	296
BspFNI	CGCG	1 cut(s)	113
BspLI	GGNNCC	4 cut(s)	95, 231, 240, 295
BspPI	GGATC	3 cut(s)	216, 288, 301
BssECI	CCNNGG	3 cut(s)	75, 103, 369
BssMI	GATC	2 cut(s)	208, 293
BssNI	GRCGYC	1 cut(s)	108
Bst4CI	ACNGT	2 cut(s)	373, 436
Bst6I	CTCTTC	2 cut(s)	71, 93
BstACI	GRCGYC	1 cut(s)	108
BstDEI	CTNAG	1 cut(s)	155
BstDSI	CCRYGG	1 cut(s)	369
BstF5I	GGATG	1 cut(s)	259
BstFNI	CGCG	1 cut(s)	113
BstHHI	GCGC	2 cut(s)	199, 379
BstKTI	GATC	2 cut(s)	211, 296
BstMBI	GATC	2 cut(s)	208, 293
BstMCI	CGRYCG	1 cut(s)	246
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 194, 273
BstNSI	RCATGY	1 cut(s)	335
BstSCI	CCNGG	1 cut(s)	103
BstUI	CGCG	1 cut(s)	113
BstV1I	GCAGC	1 cut(s)	211
BstV2I	GAAGAC	1 cut(s)	117
BstX2I	RGATCY	1 cut(s)	293
BstYI	RGATCY	1 cut(s)	293
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	369
BtsCI	GGATG	1 cut(s)	259
BtsI	GCAGTG	1 cut(s)	48
BtsIMutI	CAGTG	1 cut(s)	48
CfoI	GCGC	2 cut(s)	199, 379
Cfr13I	GGNCC	2 cut(s)	94, 230
CseI	GACGC	1 cut(s)	97
CviAII	CATG	2 cut(s)	332, 338
DdeI	CTNAG	1 cut(s)	155
DpnI	GATC	2 cut(s)	210, 295
DpnII	GATC	2 cut(s)	208, 293
Eam1104I	CTCTTC	2 cut(s)	71, 93
EarI	CTCTTC	2 cut(s)	71, 93
Ecl136II	GAGCTC	1 cut(s)	82
Eco24I	GRGCYC	1 cut(s)	84
Eco47I	GGWCC	2 cut(s)	94, 230
Eco53kI	GAGCTC	1 cut(s)	82
Eco88I	CYCGRG	1 cut(s)	314
EcoICRI	GAGCTC	1 cut(s)	82
EcoRI	GAATTC	1 cut(s)	190
EcoT38I	GRGCYC	1 cut(s)	84
FaeI	CATG	2 cut(s)	335, 341
FaiI	YATR	2 cut(s)	333, 339
FatI	CATG	2 cut(s)	331, 337
Fnu4HI	GCNGC	3 cut(s)	114, 200, 237
FokI	GGATG	1 cut(s)	266
FriOI	GRGCYC	1 cut(s)	84
Fsp4HI	GCNGC	3 cut(s)	114, 200, 237
FspBI	CTAG	1 cut(s)	161
GlaI	GCGC	2 cut(s)	198, 378
GluI	GCNGC	3 cut(s)	114, 200, 237
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	5 cut(s)	105, 121, 233, 242, 297
HgaI	GACGC	1 cut(s)	97
HhaI	GCGC	2 cut(s)	199, 379
Hin1I	GRCGYC	1 cut(s)	108
Hin1II	CATG	2 cut(s)	335, 341
Hin6I	GCGC	2 cut(s)	197, 377
HinP1I	GCGC	2 cut(s)	197, 377
HindIII	AAGCTT	1 cut(s)	152
HpaII	CCGG	5 cut(s)	105, 121, 233, 242, 297
HphI	GGTGA	1 cut(s)	370
Hpy188I	TCNGA	2 cut(s)	79, 273
Hpy188III	TCNNGA	3 cut(s)	97, 297, 305
Hpy99I	CGWCG	1 cut(s)	113
HpyAV	CCTTC	2 cut(s)	31, 139
HpyCH4III	ACNGT	2 cut(s)	373, 436
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 194, 273
HpyF3I	CTNAG	1 cut(s)	155
Hsp92I	GRCGYC	1 cut(s)	108
Hsp92II	CATG	2 cut(s)	335, 341
HspAI	GCGC	2 cut(s)	197, 377
Kpn2I	TCCGGA	1 cut(s)	296
Kzo9I	GATC	2 cut(s)	208, 293
LmnI	GCTCC	3 cut(s)	79, 244, 273
LpnPI	CCDG	8 cut(s)	110, 118, 134, 188, 246, 255, 310, 338
Lsp1109I	GCAGC	1 cut(s)	211
LweI	GCATC	1 cut(s)	394
MaeI	CTAG	1 cut(s)	161
MaeIII	GTNAC	2 cut(s)	358, 430
MalI	GATC	2 cut(s)	210, 295
MboI	GATC	2 cut(s)	208, 293
MboII	GAAGA	4 cut(s)	58, 80, 117, 190
MflI	RGATCY	1 cut(s)	293
MhlI	GDGCHC	1 cut(s)	84
MluCI	AATT	2 cut(s)	139, 190
MnlI	CCTC	5 cut(s)	16, 44, 49, 70, 85
MroI	TCCGGA	1 cut(s)	296
MseI	TTAA	1 cut(s)	150
MslI	CAYNNNNRTG	1 cut(s)	336
MspA1I	CMGCKG	1 cut(s)	202
MspI	CCGG	5 cut(s)	105, 121, 233, 242, 297
MspR9I	CCNGG	1 cut(s)	105
MvnI	CGCG	1 cut(s)	113
MwoI	GCNNNNNNNGC	3 cut(s)	11, 194, 273
NciI	CCSGG	1 cut(s)	105
NdeII	GATC	2 cut(s)	208, 293
NlaIII	CATG	2 cut(s)	335, 341
NlaIV	GGNNCC	4 cut(s)	95, 231, 240, 295
NmeAIII	GCCGAG	1 cut(s)	243
NmuCI	GTSAC	1 cut(s)	358
NspI	RCATGY	1 cut(s)	335
PkrI	GCNGC	3 cut(s)	115, 201, 238
Psp124BI	GAGCTC	1 cut(s)	84
PspN4I	GGNNCC	4 cut(s)	95, 231, 240, 295
PspPI	GGNCC	2 cut(s)	94, 230
PsuI	RGATCY	1 cut(s)	293
PvuII	CAGCTG	1 cut(s)	202
RseI	CAYNNNNRTG	1 cut(s)	336
SacI	GAGCTC	1 cut(s)	84
SaqAI	TTAA	1 cut(s)	150
SatI	GCNGC	3 cut(s)	114, 200, 237
Sau3AI	GATC	2 cut(s)	208, 293
Sau96I	GGNCC	2 cut(s)	94, 230
ScrFI	CCNGG	1 cut(s)	105
SduI	GDGCHC	1 cut(s)	84
SetI	ASST	5 cut(s)	84, 156, 204, 278, 321
SfaNI	GCATC	1 cut(s)	394
SinI	GGWCC	2 cut(s)	94, 230
SmiMI	CAYNNNNRTG	1 cut(s)	336
Sse9I	AATT	2 cut(s)	139, 190
SsiI	CCGC	4 cut(s)	12, 113, 215, 236
SspMI	CTAG	1 cut(s)	161
SstI	GAGCTC	1 cut(s)	84
StyD4I	CCNGG	1 cut(s)	103
TaaI	ACNGT	2 cut(s)	373, 436
TaqI	TCGA	2 cut(s)	170, 176
TasI	AATT	2 cut(s)	139, 190
TauI	GCSGC	2 cut(s)	116, 239
Tru1I	TTAA	1 cut(s)	150
Tru9I	TTAA	1 cut(s)	150
TscAI	CASTG	1 cut(s)	55
TseFI	GTSAC	1 cut(s)	358
TseI	GCWGC	1 cut(s)	199
Tsp45I	GTSAC	1 cut(s)	358
TspDTI	ATGAA	1 cut(s)	326
TspGWI	ACGGA	1 cut(s)	136
TspRI	CASTG	1 cut(s)	55
VpaK11BI	GGWCC	2 cut(s)	94, 230
XapI	RAATTY	1 cut(s)	190
XceI	RCATGY	1 cut(s)	335
XspI	CTAG	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.