Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0006294

Physical Location & Seq

Genomic Coordinates Reverse (-)

11512319 .. 11521397

Gene Structure 9079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG129200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGAAAGTGTTTGACAAGGCTATTGAGTCGAGACTTGACCGGCGATGTACATTTGTTACCCTTGGAGGTGGTGTGATTGGTGACACGTGTGACTTTGCCGCTGCTTCTTTCCTTCGCGGTGTTAATTTCATTCAGATTCCGACGACTGTTATGGCACAGGAGAGGAATATGGATGCATTAATATCAAGGGATCCAAATGCTCTGGCTTATGCTATAAAGCGCTCATGTGAAATGAAGGCTGAGATTGTATCCTTGGATGAGCTGGAAGGTGGACTGAGGGCCATTCTTAATTTTGGTCATACGTTTGGCCATGCAATAGAAACCGCGGTTGGCTATGGGAAGTGGTTCCATGGAGAAGCTGTTGCAGCTGGCATGAAAAGTCCTTTGAAGTGGGGTAGTACTACTAGTACTCTTCCAAATCCATTCCAACCAACCTGTGCTTTCTCATCAATGGTGACAGCTGAGGAGGTGGTTGGAGTAGTAGAATTTGCAGGCTGCTTAACCAACCTCATCAACTCCAAATATAAGAAATCTCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003856 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016838 GO:0019632 GO:0019752 GO:0032787 GO:0033587 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0046394 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

DHQ_synthase

Protein Analysis

179

Amino Acids

19.35

Weight (kDa)

6.82

Isoelectric Point (pI)

41.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHQ_synthase	PF01761	2 - 53	7.6e-16	3-dehydroquinate synthase N-terminal
DHQS_C	PF24621	52 - 134	1.3e-29	3-dehydroquinate synthase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006294)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66120 AT5G66120
fragaria_vesca	FvH4_1g11430
malus_domestica	MD15G1242600.v1.1
prunus_persica	Prupe.7G171600_v2.0.a1
pyrus_communis	pycom02g09850 pycom15g21380
rosa_chinensis	RchiOBHm_Chr2g0099011 RchiOBHm_Chr2g0099021
rosa_laevigata	RLG00000016840
rosa_multiflora	Rmu_co8359771.1_g000001 Rmu_sc0000577.1_g000012 Rmu_sc0009422.1_g000001
rosa_roxburghii	Rroxscaffold_2G00143490 Rroxscaffold_2G00143510
rosa_rugosa	Rorug02G0075600 Rorug02G0075700
rosa_samantha	Rh2AG125000 Rh2AG125100 Rh2BG128200 Rh2BG128300 Rh2CG129200 Rh2CG129300 Rh2DG129400 Rh2DG129500
rosa_wichuraiana	Rw2G009610 Rw2G009620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	117, 326
AciI	CCGC	4 cut(s)	99, 117, 324, 326
AclWI	GGATC	2 cut(s)	185, 198
AcoI	YGGCCR	1 cut(s)	307
AcsI	RAATTY	1 cut(s)	485
AcvI	CACGTG	1 cut(s)	87
AfaI	GTAC	3 cut(s)	49, 400, 409
AfeI	AGCGCT	1 cut(s)	221
AflIII	ACRYGT	2 cut(s)	84, 86
AgsI	TTSAA	1 cut(s)	388
AhlI	ACTAGT	1 cut(s)	404
AjuI	GAANNNNNNNTTGG	2 cut(s)	312, 344
AluBI	AGCT	4 cut(s)	262, 359, 368, 461
AluI	AGCT	4 cut(s)	262, 359, 368, 461
Alw26I	GTCTC	1 cut(s)	25
AlwI	GGATC	2 cut(s)	185, 198
Aor51HI	AGCGCT	1 cut(s)	221
AoxI	GGCC	2 cut(s)	279, 307
ApeKI	GCWGC	3 cut(s)	101, 365, 495
ApoI	RAATTY	1 cut(s)	485
AseI	ATTAAT	1 cut(s)	179
Asp700I	GAANNNNTTC	1 cut(s)	344
AspLEI	GCGC	1 cut(s)	222
AspS9I	GGNCC	1 cut(s)	279
AsuHPI	GGTGA	2 cut(s)	92, 466
BalI	TGGCCA	1 cut(s)	309
BamHI	GGATCC	1 cut(s)	190
BbrPI	CACGTG	1 cut(s)	87
BbvCI	CCTCAGC	1 cut(s)	462
BbvI	GCAGC	3 cut(s)	88, 377, 482
BciVI	GTATCC	1 cut(s)	259
BcoDI	GTCTC	1 cut(s)	25
BcuI	ACTAGT	1 cut(s)	404
BfaI	CTAG	1 cut(s)	405
BfoI	RGCGCY	1 cut(s)	223
BfuI	GTATCC	1 cut(s)	259
BisI	GCNGC	4 cut(s)	99, 102, 366, 496
BlsI	GCNGC	4 cut(s)	100, 103, 367, 497
BmcAI	AGTACT	2 cut(s)	400, 409
BmgT120I	GGNCC	1 cut(s)	279
BmiI	GGNNCC	2 cut(s)	192, 347
BmsI	GCATC	1 cut(s)	163
Bpu10I	CCTNAGC	1 cut(s)	462
BsaAI	YACGTR	1 cut(s)	87
BsaJI	CCNNGG	4 cut(s)	61, 252, 324, 349
BsaXI	ACNNNNNCTCC	4 cut(s)	57, 87, 345, 375
Bse118I	RCCGGY	1 cut(s)	39
BseDI	CCNNGG	4 cut(s)	61, 252, 324, 349
BseGI	GGATG	2 cut(s)	178, 262
BseMII	CTCAG	3 cut(s)	231, 266, 453
BseRI	GAGGAG	1 cut(s)	479
BseXI	GCAGC	3 cut(s)	88, 377, 482
Bsh1236I	CGCG	2 cut(s)	117, 326
BshFI	GGCC	2 cut(s)	281, 309
BsiSI	CCGG	1 cut(s)	40
BsmAI	GTCTC	1 cut(s)	25
BsnI	GGCC	2 cut(s)	281, 309
Bsp1407I	TGTACA	1 cut(s)	47
Bsp143I	GATC	1 cut(s)	190
Bsp19I	CCATGG	1 cut(s)	349
BspACI	CCGC	4 cut(s)	99, 117, 324, 326
BspANI	GGCC	2 cut(s)	281, 309
BspCNI	CTCAG	3 cut(s)	232, 267, 454
BspFNI	CGCG	2 cut(s)	117, 326
BspLI	GGNNCC	2 cut(s)	192, 347
BspPI	GGATC	2 cut(s)	185, 198
BsrFI	RCCGGY	1 cut(s)	39
BsrGI	TGTACA	1 cut(s)	47
BssAI	RCCGGY	1 cut(s)	39
BssECI	CCNNGG	4 cut(s)	61, 252, 324, 349
BssMI	GATC	1 cut(s)	190
BssT1I	CCWWGG	3 cut(s)	61, 252, 349
Bst4CI	ACNGT	1 cut(s)	148
Bst6I	CTCTTC	1 cut(s)	417
BstAUI	TGTACA	1 cut(s)	47
BstBAI	YACGTR	1 cut(s)	87
BstC8I	GCNNGC	2 cut(s)	370, 493
BstDEI	CTNAG	3 cut(s)	240, 275, 462
BstDSI	CCRYGG	2 cut(s)	324, 349
BstF5I	GGATG	2 cut(s)	178, 262
BstFNI	CGCG	2 cut(s)	117, 326
BstH2I	RGCGCY	1 cut(s)	223
BstHHI	GCGC	1 cut(s)	222
BstKTI	GATC	1 cut(s)	193
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	1 cut(s)	190
BstMWI	GCNNNNNNNGC	1 cut(s)	365
BstUI	CGCG	2 cut(s)	117, 326
BstV1I	GCAGC	3 cut(s)	88, 377, 482
BstX2I	RGATCY	1 cut(s)	190
BstYI	RGATCY	1 cut(s)	190
BsuI	GTATCC	1 cut(s)	259
BsuRI	GGCC	2 cut(s)	281, 309
BtgI	CCRYGG	2 cut(s)	324, 349
BtgZI	GCGATG	1 cut(s)	58
BtsCI	GGATG	2 cut(s)	178, 262
Cac8I	GCNNGC	2 cut(s)	370, 493
CfoI	GCGC	1 cut(s)	222
Cfr10I	RCCGGY	1 cut(s)	39
Cfr13I	GGNCC	1 cut(s)	279
Cfr42I	CCGCGG	1 cut(s)	327
Csp6I	GTAC	3 cut(s)	48, 399, 408
CviAII	CATG	4 cut(s)	225, 311, 350, 373
CviQI	GTAC	3 cut(s)	48, 399, 408
DdeI	CTNAG	3 cut(s)	240, 275, 462
DpnI	GATC	1 cut(s)	192
DpnII	GATC	1 cut(s)	190
EaeI	YGGCCR	1 cut(s)	307
Eam1104I	CTCTTC	1 cut(s)	417
EarI	CTCTTC	1 cut(s)	417
Eco130I	CCWWGG	3 cut(s)	61, 252, 349
Eco47III	AGCGCT	1 cut(s)	221
Eco72I	CACGTG	1 cut(s)	87
EcoT14I	CCWWGG	3 cut(s)	61, 252, 349
EcoT22I	ATGCAT	1 cut(s)	178
ErhI	CCWWGG	3 cut(s)	61, 252, 349
FaeI	CATG	4 cut(s)	228, 314, 353, 376
FatI	CATG	4 cut(s)	224, 310, 349, 372
Fnu4HI	GCNGC	4 cut(s)	99, 102, 366, 496
FokI	GGATG	2 cut(s)	185, 269
Fsp4HI	GCNGC	4 cut(s)	99, 102, 366, 496
FspBI	CTAG	1 cut(s)	405
GlaI	GCGC	1 cut(s)	221
GluI	GCNGC	4 cut(s)	99, 102, 366, 496
HaeII	RGCGCY	1 cut(s)	223
HaeIII	GGCC	2 cut(s)	281, 309
HapII	CCGG	1 cut(s)	40
HhaI	GCGC	1 cut(s)	222
Hin1II	CATG	4 cut(s)	228, 314, 353, 376
Hin6I	GCGC	1 cut(s)	220
HinP1I	GCGC	1 cut(s)	220
HinfI	GANTC	2 cut(s)	26, 136
HpaII	CCGG	1 cut(s)	40
HphI	GGTGA	2 cut(s)	92, 466
Hpy166II	GTNNAC	1 cut(s)	272
Hpy188I	TCNGA	2 cut(s)	135, 141
Hpy188III	TCNNGA	1 cut(s)	30
Hpy8I	GTNNAC	1 cut(s)	272
Hpy99I	CGWCG	1 cut(s)	145
HpyAV	CCTTC	3 cut(s)	122, 229, 260
HpyCH4III	ACNGT	1 cut(s)	148
HpyCH4IV	ACGT	2 cut(s)	86, 302
HpyCH4V	TGCA	4 cut(s)	176, 314, 365, 491
HpyF10VI	GCNNNNNNNGC	1 cut(s)	365
HpyF3I	CTNAG	3 cut(s)	240, 275, 462
HpySE526I	ACGT	2 cut(s)	86, 302
Hsp92II	CATG	4 cut(s)	228, 314, 353, 376
HspAI	GCGC	1 cut(s)	220
KspI	CCGCGG	1 cut(s)	327
Kzo9I	GATC	1 cut(s)	190
LpnPI	CCDG	7 cut(s)	53, 143, 188, 248, 354, 448, 477
Lsp1109I	GCAGC	3 cut(s)	88, 377, 482
LweI	GCATC	1 cut(s)	163
MaeI	CTAG	1 cut(s)	405
MaeII	ACGT	2 cut(s)	86, 302
MaeIII	GTNAC	4 cut(s)	55, 80, 89, 454
MalI	GATC	1 cut(s)	192
MboI	GATC	1 cut(s)	190
MboII	GAAGA	1 cut(s)	404
MflI	RGATCY	1 cut(s)	190
MlsI	TGGCCA	1 cut(s)	309
MluCI	AATT	3 cut(s)	124, 289, 485
MluNI	TGGCCA	1 cut(s)	309
MlyI	GAGTC	1 cut(s)	35
MmeI	TCCRAC	3 cut(s)	164, 451, 454
MnlI	CCTC	6 cut(s)	59, 156, 270, 457, 460, 518
Mox20I	TGGCCA	1 cut(s)	309
Mph1103I	ATGCAT	1 cut(s)	178
MroXI	GAANNNNTTC	1 cut(s)	344
MscI	TGGCCA	1 cut(s)	309
MseI	TTAA	4 cut(s)	123, 179, 288, 500
Msp20I	TGGCCA	1 cut(s)	309
MspA1I	CMGCKG	4 cut(s)	101, 326, 368, 461
MspI	CCGG	1 cut(s)	40
MvnI	CGCG	2 cut(s)	117, 326
MwoI	GCNNNNNNNGC	1 cut(s)	365
NcoI	CCATGG	1 cut(s)	349
NdeII	GATC	1 cut(s)	190
NlaIII	CATG	4 cut(s)	228, 314, 353, 376
NlaIV	GGNNCC	2 cut(s)	192, 347
NmuCI	GTSAC	3 cut(s)	80, 89, 454
NsiI	ATGCAT	1 cut(s)	178
PdmI	GAANNNNTTC	1 cut(s)	344
PfeI	GAWTC	1 cut(s)	136
PkrI	GCNGC	4 cut(s)	100, 103, 367, 497
PleI	GAGTC	1 cut(s)	34
PmaCI	CACGTG	1 cut(s)	87
PmlI	CACGTG	1 cut(s)	87
PpsI	GAGTC	1 cut(s)	34
Ppu21I	YACGTR	1 cut(s)	87
PshBI	ATTAAT	1 cut(s)	179
PspCI	CACGTG	1 cut(s)	87
PspN4I	GGNNCC	2 cut(s)	192, 347
PspPI	GGNCC	1 cut(s)	279
PsuI	RGATCY	1 cut(s)	190
PvuII	CAGCTG	2 cut(s)	368, 461
RsaI	GTAC	3 cut(s)	49, 400, 409
RsaNI	GTAC	3 cut(s)	48, 399, 408
SacII	CCGCGG	1 cut(s)	327
SaqAI	TTAA	4 cut(s)	123, 179, 288, 500
SatI	GCNGC	4 cut(s)	99, 102, 366, 496
Sau3AI	GATC	1 cut(s)	190
Sau96I	GGNCC	1 cut(s)	279
ScaI	AGTACT	2 cut(s)	400, 409
SchI	GAGTC	1 cut(s)	35
SfaNI	GCATC	1 cut(s)	163
Sfr303I	CCGCGG	1 cut(s)	327
SgrBI	CCGCGG	1 cut(s)	327
SpeI	ACTAGT	1 cut(s)	404
Sse9I	AATT	3 cut(s)	124, 289, 485
SsiI	CCGC	4 cut(s)	99, 117, 324, 326
SspMI	CTAG	1 cut(s)	405
StyI	CCWWGG	3 cut(s)	61, 252, 349
TaaI	ACNGT	1 cut(s)	148
TaiI	ACGT	2 cut(s)	89, 305
TaqI	TCGA	1 cut(s)	29
TasI	AATT	3 cut(s)	124, 289, 485
TatI	WGTACW	3 cut(s)	47, 398, 407
TauI	GCSGC	1 cut(s)	101
TfiI	GAWTC	1 cut(s)	136
Tru1I	TTAA	4 cut(s)	123, 179, 288, 500
Tru9I	TTAA	4 cut(s)	123, 179, 288, 500
TseFI	GTSAC	3 cut(s)	80, 89, 454
TseI	GCWGC	3 cut(s)	101, 365, 495
Tsp45I	GTSAC	3 cut(s)	80, 89, 454
TspDTI	ATGAA	4 cut(s)	17, 118, 248, 389
TspGWI	ACGGA	1 cut(s)	525
VspI	ATTAAT	1 cut(s)	179
XapI	RAATTY	1 cut(s)	485
XmnI	GAANNNNTTC	1 cut(s)	344
XspI	CTAG	1 cut(s)	405
ZrmI	AGTACT	2 cut(s)	400, 409
Zsp2I	ATGCAT	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.