3-dehydroquinate synthase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G66120 AT5G66120 |
| fragaria_vesca | FvH4_1g11430 |
| malus_domestica | MD15G1242600.v1.1 |
| prunus_persica | Prupe.7G171600_v2.0.a1 |
| pyrus_communis | pycom02g09850 pycom15g21380 |
| rosa_chinensis | RchiOBHm_Chr2g0099011 RchiOBHm_Chr2g0099021 |
| rosa_laevigata | RLG00000016840 |
| rosa_multiflora | Rmu_co8359771.1_g000001 Rmu_sc0000577.1_g000012 Rmu_sc0009422.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00143490 Rroxscaffold_2G00143510 |
| rosa_rugosa | Rorug02G0075600 Rorug02G0075700 |
| rosa_samantha | Rh2AG125000 Rh2AG125100 Rh2BG128200 Rh2BG128300 Rh2CG129200 Rh2CG129300 Rh2DG129400 Rh2DG129500 |
| rosa_wichuraiana | Rw2G009610 Rw2G009620 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 52 |
| AccII | CGCG | 2 cut(s) | 300, 668 |
| AciI | CCGC | 8 cut(s) | 85, 282, 300, 666, 668, 742, 791, 860 |
| AclWI | GGATC | 1 cut(s) | 148 |
| AcoI | YGGCCR | 1 cut(s) | 628 |
| AcsI | RAATTY | 1 cut(s) | 524 |
| AfaI | GTAC | 6 cut(s) | 232, 406, 572, 652, 1038, 1049 |
| AfeI | AGCGCT | 1 cut(s) | 8 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 74 |
| AflIII | ACRYGT | 1 cut(s) | 267 |
| AgeI | ACCGGT | 1 cut(s) | 47 |
| AgsI | TTSAA | 1 cut(s) | 847 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 654, 686 |
| AluBI | AGCT | 5 cut(s) | 112, 502, 583, 701, 710 |
| AluI | AGCT | 5 cut(s) | 112, 502, 583, 701, 710 |
| Alw26I | GTCTC | 3 cut(s) | 208, 429, 862 |
| AlwI | GGATC | 1 cut(s) | 148 |
| Ama87I | CYCGRG | 1 cut(s) | 386 |
| Aor51HI | AGCGCT | 1 cut(s) | 8 |
| AoxI | GGCC | 5 cut(s) | 65, 600, 628, 798, 815 |
| ApeKI | GCWGC | 6 cut(s) | 4, 9, 112, 115, 284, 707 |
| ApoI | RAATTY | 1 cut(s) | 524 |
| AseI | ATTAAT | 1 cut(s) | 560 |
| AsiGI | ACCGGT | 1 cut(s) | 47 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 686 |
| AspLEI | GCGC | 1 cut(s) | 9 |
| AspS9I | GGNCC | 2 cut(s) | 50, 600 |
| AsuC2I | CCSGG | 1 cut(s) | 64 |
| AsuHPI | GGTGA | 1 cut(s) | 275 |
| AvaI | CYCGRG | 1 cut(s) | 386 |
| AvaII | GGWCC | 1 cut(s) | 50 |
| BalI | TGGCCA | 1 cut(s) | 630 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 927, 959 |
| BauI | CACGAG | 1 cut(s) | 1020 |
| BbsI | GAAGAC | 1 cut(s) | 935 |
| BbvI | GCAGC | 5 cut(s) | 16, 99, 127, 271, 719 |
| BccI | CCATC | 2 cut(s) | 611, 850 |
| BceAI | ACGGC | 1 cut(s) | 108 |
| BcgI | CGANNNNNNTGC | 3 cut(s) | 35, 409, 443 |
| BcnI | CCSGG | 1 cut(s) | 64 |
| BcoDI | GTCTC | 3 cut(s) | 208, 429, 862 |
| BfaI | CTAG | 1 cut(s) | 473 |
| BfmI | CTRYAG | 3 cut(s) | 41, 113, 1109 |
| BfoI | RGCGCY | 1 cut(s) | 10 |
| BisI | GCNGC | 7 cut(s) | 5, 10, 113, 116, 282, 285, 708 |
| BlsI | GCNGC | 7 cut(s) | 6, 11, 114, 117, 283, 286, 709 |
| BmcAI | AGTACT | 2 cut(s) | 652, 1049 |
| Bme1390I | CCNGG | 1 cut(s) | 64 |
| Bme18I | GGWCC | 1 cut(s) | 50 |
| BmeT110I | CYCGRG | 1 cut(s) | 386 |
| BmgT120I | GGNCC | 2 cut(s) | 50, 600 |
| BmiI | GGNNCC | 1 cut(s) | 689 |
| BmrFI | CCNGG | 1 cut(s) | 64 |
| BmrI | ACTGGG | 1 cut(s) | 378 |
| BmsI | GCATC | 3 cut(s) | 485, 508, 544 |
| BmuI | ACTGGG | 1 cut(s) | 378 |
| BpiI | GAAGAC | 1 cut(s) | 935 |
| BpuEI | CTTGAG | 1 cut(s) | 857 |
| BpuMI | CCSGG | 1 cut(s) | 64 |
| BsaAI | YACGTR | 1 cut(s) | 1058 |
| BsaJI | CCNNGG | 5 cut(s) | 62, 244, 666, 691, 745 |
| BsaWI | WCCGGW | 1 cut(s) | 47 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 240, 270, 687, 717 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 74 |
| Bse118I | RCCGGY | 2 cut(s) | 47, 222 |
| Bse1I | ACTGG | 3 cut(s) | 373, 1040, 1045 |
| Bse3DI | GCAATG | 2 cut(s) | 455, 786 |
| BseDI | CCNNGG | 5 cut(s) | 62, 244, 666, 691, 745 |
| BseGI | GGATG | 5 cut(s) | 142, 559, 603, 1095, 1103 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 74 |
| BseMI | GCAATG | 2 cut(s) | 455, 786 |
| BseMII | CTCAG | 2 cut(s) | 99, 587 |
| BseNI | ACTGG | 3 cut(s) | 373, 1040, 1045 |
| BseRI | GAGGAG | 1 cut(s) | 90 |
| BseXI | GCAGC | 5 cut(s) | 16, 99, 127, 271, 719 |
| BseYI | CCCAGC | 1 cut(s) | 502 |
| Bsh1236I | CGCG | 2 cut(s) | 300, 668 |
| BshFI | GGCC | 5 cut(s) | 67, 602, 630, 800, 817 |
| BshTI | ACCGGT | 1 cut(s) | 47 |
| BsiHKCI | CYCGRG | 1 cut(s) | 386 |
| BsiSI | CCGG | 4 cut(s) | 48, 64, 75, 223 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 74 |
| BsmAI | GTCTC | 3 cut(s) | 208, 429, 862 |
| BsnI | GGCC | 5 cut(s) | 67, 602, 630, 800, 817 |
| BsoBI | CYCGRG | 1 cut(s) | 386 |
| Bsp1407I | TGTACA | 1 cut(s) | 230 |
| Bsp143I | GATC | 2 cut(s) | 153, 1030 |
| Bsp19I | CCATGG | 1 cut(s) | 691 |
| BspACI | CCGC | 8 cut(s) | 85, 282, 300, 666, 668, 742, 791, 860 |
| BspANI | GGCC | 5 cut(s) | 67, 602, 630, 800, 817 |
| BspCNI | CTCAG | 2 cut(s) | 100, 588 |
| BspFNI | CGCG | 2 cut(s) | 300, 668 |
| BspLI | GGNNCC | 1 cut(s) | 689 |
| BspMAI | CTGCAG | 2 cut(s) | 45, 117 |
| BspPI | GGATC | 1 cut(s) | 148 |
| BsrDI | GCAATG | 2 cut(s) | 455, 786 |
| BsrFI | RCCGGY | 2 cut(s) | 47, 222 |
| BsrGI | TGTACA | 1 cut(s) | 230 |
| BsrI | ACTGG | 3 cut(s) | 373, 1040, 1045 |
| BssAI | RCCGGY | 2 cut(s) | 47, 222 |
| BssECI | CCNNGG | 5 cut(s) | 62, 244, 666, 691, 745 |
| BssMI | GATC | 2 cut(s) | 153, 1030 |
| BssSI | CACGAG | 1 cut(s) | 1020 |
| BssT1I | CCWWGG | 3 cut(s) | 244, 691, 745 |
| Bst2BI | CACGAG | 1 cut(s) | 1020 |
| Bst4CI | ACNGT | 2 cut(s) | 331, 884 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 653 |
| BstAUI | TGTACA | 1 cut(s) | 230 |
| BstBAI | YACGTR | 1 cut(s) | 1058 |
| BstC8I | GCNNGC | 3 cut(s) | 25, 80, 712 |
| BstDEI | CTNAG | 2 cut(s) | 108, 596 |
| BstDSI | CCRYGG | 2 cut(s) | 666, 691 |
| BstF5I | GGATG | 5 cut(s) | 142, 559, 603, 1095, 1103 |
| BstFNI | CGCG | 2 cut(s) | 300, 668 |
| BstH2I | RGCGCY | 1 cut(s) | 10 |
| BstHHI | GCGC | 1 cut(s) | 9 |
| BstKTI | GATC | 2 cut(s) | 156, 1033 |
| BstMAI | GTCTC | 3 cut(s) | 208, 429, 862 |
| BstMBI | GATC | 2 cut(s) | 153, 1030 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 84, 653, 707, 797 |
| BstNSI | RCATGY | 2 cut(s) | 82, 271 |
| BstSCI | CCNGG | 1 cut(s) | 62 |
| BstSFI | CTRYAG | 3 cut(s) | 41, 113, 1109 |
| BstUI | CGCG | 2 cut(s) | 300, 668 |
| BstV1I | GCAGC | 5 cut(s) | 16, 99, 127, 271, 719 |
| BstV2I | GAAGAC | 1 cut(s) | 935 |
| BsuRI | GGCC | 5 cut(s) | 67, 602, 630, 800, 817 |
| BtgI | CCRYGG | 2 cut(s) | 666, 691 |
| BtgZI | GCGATG | 1 cut(s) | 241 |
| BtsCI | GGATG | 5 cut(s) | 142, 559, 603, 1095, 1103 |
| Cac8I | GCNNGC | 3 cut(s) | 25, 80, 712 |
| CfoI | GCGC | 1 cut(s) | 9 |
| Cfr10I | RCCGGY | 2 cut(s) | 47, 222 |
| Cfr13I | GGNCC | 2 cut(s) | 50, 600 |
| Cfr42I | CCGCGG | 1 cut(s) | 669 |
| CpoI | CGGWCCG | 1 cut(s) | 50 |
| CseI | GACGC | 1 cut(s) | 107 |
| Csp6I | GTAC | 6 cut(s) | 231, 405, 571, 651, 1037, 1048 |
| CspAI | ACCGGT | 1 cut(s) | 47 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 865, 900 |
| CspI | CGGWCCG | 1 cut(s) | 50 |
| CviAII | CATG | 7 cut(s) | 79, 268, 578, 632, 692, 715, 829 |
| CviQI | GTAC | 6 cut(s) | 231, 405, 571, 651, 1037, 1048 |
| DdeI | CTNAG | 2 cut(s) | 108, 596 |
| DpnI | GATC | 2 cut(s) | 155, 1032 |
| DpnII | GATC | 2 cut(s) | 153, 1030 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 52 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 52 |
| EaeI | YGGCCR | 1 cut(s) | 628 |
| EciI | GGCGGA | 1 cut(s) | 875 |
| Eco130I | CCWWGG | 3 cut(s) | 244, 691, 745 |
| Eco147I | AGGCCT | 1 cut(s) | 817 |
| Eco47I | GGWCC | 1 cut(s) | 50 |
| Eco47III | AGCGCT | 1 cut(s) | 8 |
| Eco88I | CYCGRG | 1 cut(s) | 386 |
| EcoRI | GAATTC | 1 cut(s) | 524 |
| EcoT14I | CCWWGG | 3 cut(s) | 244, 691, 745 |
| EcoT22I | ATGCAT | 1 cut(s) | 559 |
| ErhI | CCWWGG | 3 cut(s) | 244, 691, 745 |
| FaeI | CATG | 7 cut(s) | 82, 271, 581, 635, 695, 718, 832 |
| FatI | CATG | 7 cut(s) | 78, 267, 577, 631, 691, 714, 828 |
| FauI | CCCGC | 1 cut(s) | 92 |
| Fnu4HI | GCNGC | 7 cut(s) | 5, 10, 113, 116, 282, 285, 708 |
| FokI | GGATG | 5 cut(s) | 129, 566, 590, 1082, 1090 |
| Fsp4HI | GCNGC | 7 cut(s) | 5, 10, 113, 116, 282, 285, 708 |
| FspBI | CTAG | 1 cut(s) | 473 |
| GlaI | GCGC | 1 cut(s) | 8 |
| GluI | GCNGC | 7 cut(s) | 5, 10, 113, 116, 282, 285, 708 |
| GsaI | CCCAGC | 1 cut(s) | 506 |
| HaeII | RGCGCY | 1 cut(s) | 10 |
| HaeIII | GGCC | 5 cut(s) | 67, 602, 630, 800, 817 |
| HapII | CCGG | 4 cut(s) | 48, 64, 75, 223 |
| HgaI | GACGC | 1 cut(s) | 107 |
| HhaI | GCGC | 1 cut(s) | 9 |
| Hin1II | CATG | 7 cut(s) | 82, 271, 581, 635, 695, 718, 832 |
| Hin6I | GCGC | 1 cut(s) | 7 |
| HinP1I | GCGC | 1 cut(s) | 7 |
| HincII | GTYRAC | 1 cut(s) | 781 |
| HindII | GTYRAC | 1 cut(s) | 781 |
| HinfI | GANTC | 9 cut(s) | 29, 209, 319, 347, 761, 824, 832, 978, 1016 |
| HpaII | CCGG | 4 cut(s) | 48, 64, 75, 223 |
| HphI | GGTGA | 1 cut(s) | 275 |
| Hpy166II | GTNNAC | 3 cut(s) | 140, 593, 781 |
| Hpy188I | TCNGA | 3 cut(s) | 58, 318, 324 |
| Hpy188III | TCNNGA | 6 cut(s) | 213, 388, 480, 821, 836, 1013 |
| Hpy8I | GTNNAC | 3 cut(s) | 140, 593, 781 |
| Hpy99I | CGWCG | 4 cut(s) | 23, 98, 123, 328 |
| HpyAV | CCTTC | 3 cut(s) | 305, 581, 960 |
| HpyCH4III | ACNGT | 2 cut(s) | 331, 884 |
| HpyCH4IV | ACGT | 2 cut(s) | 623, 1057 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 84, 653, 707, 797 |
| HpyF3I | CTNAG | 2 cut(s) | 108, 596 |
| HpySE526I | ACGT | 2 cut(s) | 623, 1057 |
| Hsp92II | CATG | 7 cut(s) | 82, 271, 581, 635, 695, 718, 832 |
| HspAI | GCGC | 1 cut(s) | 7 |
| KspI | CCGCGG | 1 cut(s) | 669 |
| Kzo9I | GATC | 2 cut(s) | 153, 1030 |
| LmnI | GCTCC | 1 cut(s) | 103 |
| Lsp1109I | GCAGC | 5 cut(s) | 16, 99, 127, 271, 719 |
| LweI | GCATC | 3 cut(s) | 485, 508, 544 |
| MaeI | CTAG | 1 cut(s) | 473 |
| MaeII | ACGT | 2 cut(s) | 623, 1057 |
| MaeIII | GTNAC | 2 cut(s) | 263, 272 |
| MalI | GATC | 2 cut(s) | 155, 1032 |
| MboI | GATC | 2 cut(s) | 153, 1030 |
| MboII | GAAGA | 3 cut(s) | 342, 403, 935 |
| MlsI | TGGCCA | 1 cut(s) | 630 |
| MluCI | AATT | 5 cut(s) | 307, 495, 524, 610, 911 |
| MluNI | TGGCCA | 1 cut(s) | 630 |
| MlyI | GAGTC | 4 cut(s) | 23, 218, 826, 972 |
| MmeI | TCCRAC | 2 cut(s) | 347, 731 |
| MnlI | CCTC | 9 cut(s) | 26, 78, 111, 160, 167, 242, 537, 591, 828 |
| Mox20I | TGGCCA | 1 cut(s) | 630 |
| Mph1103I | ATGCAT | 1 cut(s) | 559 |
| MroXI | GAANNNNTTC | 1 cut(s) | 686 |
| MscI | TGGCCA | 1 cut(s) | 630 |
| MseI | TTAA | 7 cut(s) | 306, 375, 560, 609, 729, 983, 1068 |
| MslI | CAYNNNNRTG | 2 cut(s) | 182, 719 |
| Msp20I | TGGCCA | 1 cut(s) | 630 |
| MspA1I | CMGCKG | 3 cut(s) | 284, 668, 710 |
| MspI | CCGG | 4 cut(s) | 48, 64, 75, 223 |
| MspR9I | CCNGG | 1 cut(s) | 64 |
| MvnI | CGCG | 2 cut(s) | 300, 668 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 84, 653, 707, 797 |
| NciI | CCSGG | 1 cut(s) | 64 |
| NcoI | CCATGG | 1 cut(s) | 691 |
| NdeII | GATC | 2 cut(s) | 153, 1030 |
| NlaIII | CATG | 7 cut(s) | 82, 271, 581, 635, 695, 718, 832 |
| NlaIV | GGNNCC | 1 cut(s) | 689 |
| NmuCI | GTSAC | 2 cut(s) | 263, 272 |
| NsiI | ATGCAT | 1 cut(s) | 559 |
| NspI | RCATGY | 2 cut(s) | 82, 271 |
| PaeI | GCATGC | 1 cut(s) | 82 |
| PceI | AGGCCT | 1 cut(s) | 817 |
| PciI | ACATGT | 1 cut(s) | 267 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 24 |
| PdmI | GAANNNNTTC | 1 cut(s) | 686 |
| PfeI | GAWTC | 5 cut(s) | 319, 347, 761, 824, 1016 |
| PinAI | ACCGGT | 1 cut(s) | 47 |
| PkrI | GCNGC | 7 cut(s) | 6, 11, 114, 117, 283, 286, 709 |
| PleI | GAGTC | 4 cut(s) | 23, 217, 826, 972 |
| PpsI | GAGTC | 4 cut(s) | 23, 217, 826, 972 |
| Ppu21I | YACGTR | 1 cut(s) | 1058 |
| PscI | ACATGT | 1 cut(s) | 267 |
| PshBI | ATTAAT | 1 cut(s) | 560 |
| PspFI | CCCAGC | 1 cut(s) | 502 |
| PspN4I | GGNNCC | 1 cut(s) | 689 |
| PspPI | GGNCC | 2 cut(s) | 50, 600 |
| PstI | CTGCAG | 2 cut(s) | 45, 117 |
| PvuII | CAGCTG | 1 cut(s) | 710 |
| RsaI | GTAC | 6 cut(s) | 232, 406, 572, 652, 1038, 1049 |
| RsaNI | GTAC | 6 cut(s) | 231, 405, 571, 651, 1037, 1048 |
| RseI | CAYNNNNRTG | 2 cut(s) | 182, 719 |
| Rsr2I | CGGWCCG | 1 cut(s) | 50 |
| RsrII | CGGWCCG | 1 cut(s) | 50 |
| SacII | CCGCGG | 1 cut(s) | 669 |
| SaqAI | TTAA | 7 cut(s) | 306, 375, 560, 609, 729, 983, 1068 |
| SatI | GCNGC | 7 cut(s) | 5, 10, 113, 116, 282, 285, 708 |
| Sau3AI | GATC | 2 cut(s) | 153, 1030 |
| Sau96I | GGNCC | 2 cut(s) | 50, 600 |
| ScaI | AGTACT | 2 cut(s) | 652, 1049 |
| SchI | GAGTC | 4 cut(s) | 23, 218, 826, 972 |
| ScrFI | CCNGG | 1 cut(s) | 64 |
| SfaNI | GCATC | 3 cut(s) | 485, 508, 544 |
| SfcI | CTRYAG | 3 cut(s) | 41, 113, 1109 |
| Sfr303I | CCGCGG | 1 cut(s) | 669 |
| SgrBI | CCGCGG | 1 cut(s) | 669 |
| SinI | GGWCC | 1 cut(s) | 50 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 182, 719 |
| SmlI | CTYRAG | 1 cut(s) | 836 |
| SmoI | CTYRAG | 1 cut(s) | 836 |
| SphI | GCATGC | 1 cut(s) | 82 |
| Sse9I | AATT | 5 cut(s) | 307, 495, 524, 610, 911 |
| SseBI | AGGCCT | 1 cut(s) | 817 |
| SsiI | CCGC | 8 cut(s) | 85, 282, 300, 666, 668, 742, 791, 860 |
| SspMI | CTAG | 1 cut(s) | 473 |
| StuI | AGGCCT | 1 cut(s) | 817 |
| StyD4I | CCNGG | 1 cut(s) | 62 |
| StyI | CCWWGG | 3 cut(s) | 244, 691, 745 |
| TaaI | ACNGT | 2 cut(s) | 331, 884 |
| TaiI | ACGT | 2 cut(s) | 626, 1060 |
| TaqI | TCGA | 3 cut(s) | 103, 152, 212 |
| TasI | AATT | 5 cut(s) | 307, 495, 524, 610, 911 |
| TatI | WGTACW | 3 cut(s) | 230, 650, 1047 |
| TauI | GCSGC | 1 cut(s) | 284 |
| TfiI | GAWTC | 5 cut(s) | 319, 347, 761, 824, 1016 |
| Tru1I | TTAA | 7 cut(s) | 306, 375, 560, 609, 729, 983, 1068 |
| Tru9I | TTAA | 7 cut(s) | 306, 375, 560, 609, 729, 983, 1068 |
| TseFI | GTSAC | 2 cut(s) | 263, 272 |
| TseI | GCWGC | 6 cut(s) | 4, 9, 112, 115, 284, 707 |
| Tsp45I | GTSAC | 2 cut(s) | 263, 272 |
| TspDTI | ATGAA | 2 cut(s) | 200, 301 |
| TspGWI | ACGGA | 3 cut(s) | 42, 60, 82 |
| VpaK11BI | GGWCC | 1 cut(s) | 50 |
| VspI | ATTAAT | 1 cut(s) | 560 |
| XapI | RAATTY | 1 cut(s) | 524 |
| XceI | RCATGY | 2 cut(s) | 82, 271 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 169, 638 |
| XmnI | GAANNNNTTC | 1 cut(s) | 686 |
| XspI | CTAG | 1 cut(s) | 473 |
| ZrmI | AGTACT | 2 cut(s) | 652, 1049 |
| Zsp2I | ATGCAT | 1 cut(s) | 559 |