Rroxscaffold_2G00143510

3-dehydroquinate synthase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
81510546 .. 81512549
2004 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00143510.1

Sequence Viewer

Length: 1113 bp
ATGCAGCGCTGCAACCTCGTCGCTGGCGACTCCACCCTACTGCAGACCGGTCCGTCTGACCCCCGGCCTCCGTCCGGCATGCCCCGCCACTCCGTCGCTCCTCGAACTGAGCTGCAGCGTCGCCGTCTGCTAAAGTGTGGACATCCACCCTCGATCCTCTCCATATATATTTTGGACACTCTTATGAAAGTGTTTTACAAGGCTATTGAGTCGAGACTTGACCGGCGATGTACATTTGTTGCCCTTGGAGGTGGTGTGATTGGTGACATGTGTGACTTTGCCGCTGCTTCTTTCCTTCGCGGTGTTAATTTCATTCAGATTCCGACGACTGTTATGGCACAGGTTGATTCTTCTGTTGGGGGCAAAACTGGGTTTAACCACTCTCTCGGGAAGAACTTGATTGGTACTATTTACCAACCGAAGTCTCTGCTTATTGACACAGACACAATAAACACATTGCCAGATAGGGAACTAGCATCAGGACTTGCAGAAGTAATTGAGCTGGGGCTTGTTATAGATGCAGAATTCTTTGAGTGGCAGGAGAGGAATATGGATGCATTAATATCAAGGTACTTACATGAGCTGGAAGGTGGACTGAGGGCCATCCTTAATTTTGGTCATACGTTTGGCCATGTGAGTTTTGGTGCAAGTACTGCAATAGAAACCGCGGTTGGCTATGGGAAGTGGTTCCATGGAGAAGCTGTTGCAGCTGGCATGGTTATGATTGTTAATATGTCCTACCGCCTTGGTTGGATTGACGATTCACTTGTCAAGCGAGTTGACAACATTGCGGAACAGGCCAACTTACCTATTAGGCCTCCTGAATCCATGACTCTTGAGAAGTTCAAGTCTTTGATGGCGGATTTGAGACACCCCAACTACTGTGGAGTGATTTTGATTGTGAAGCATAAATTACTTTATCATTGTTTTGATGTATGTCGTCTTCCTTATGGCAACTTGATAAGAAGGATAGAAAGACTCTTAACCAAACACCCCACGCATTTCGCAAGTCTTGATTCTCGTGTGGTTGATCTTGTACCAGTCCAGTACTATTTACGTGCAAGTTTTAACCCTTTGTTTTGCACTTTTGTTGTCATCCAATCATCCCTGTAG

Protein Analysis

370

Amino Acids

41.25

Weight (kDa)

8.37

Isoelectric Point (pI)

44.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHQ_synthase PF01761 58 - 159 2.8e-39 3-dehydroquinate synthase N-terminal
DHQS_C PF24621 194 - 287 4.6e-22 3-dehydroquinate synthase C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 52
AccII CGCG 2 cut(s) 300, 668
AciI CCGC 8 cut(s) 85, 282, 300, 666, 668, 742, 791, 860
AclWI GGATC 1 cut(s) 148
AcoI YGGCCR 1 cut(s) 628
AcsI RAATTY 1 cut(s) 524
AfaI GTAC 6 cut(s) 232, 406, 572, 652, 1038, 1049
AfeI AGCGCT 1 cut(s) 8
AfiI CCNNNNNNNGG 1 cut(s) 74
AflIII ACRYGT 1 cut(s) 267
AgeI ACCGGT 1 cut(s) 47
AgsI TTSAA 1 cut(s) 847
AjuI GAANNNNNNNTTGG 2 cut(s) 654, 686
AluBI AGCT 5 cut(s) 112, 502, 583, 701, 710
AluI AGCT 5 cut(s) 112, 502, 583, 701, 710
Alw26I GTCTC 3 cut(s) 208, 429, 862
AlwI GGATC 1 cut(s) 148
Ama87I CYCGRG 1 cut(s) 386
Aor51HI AGCGCT 1 cut(s) 8
AoxI GGCC 5 cut(s) 65, 600, 628, 798, 815
ApeKI GCWGC 6 cut(s) 4, 9, 112, 115, 284, 707
ApoI RAATTY 1 cut(s) 524
AseI ATTAAT 1 cut(s) 560
AsiGI ACCGGT 1 cut(s) 47
Asp700I GAANNNNTTC 1 cut(s) 686
AspLEI GCGC 1 cut(s) 9
AspS9I GGNCC 2 cut(s) 50, 600
AsuC2I CCSGG 1 cut(s) 64
AsuHPI GGTGA 1 cut(s) 275
AvaI CYCGRG 1 cut(s) 386
AvaII GGWCC 1 cut(s) 50
BalI TGGCCA 1 cut(s) 630
BarI GAAGNNNNNNTAC 2 cut(s) 927, 959
BauI CACGAG 1 cut(s) 1020
BbsI GAAGAC 1 cut(s) 935
BbvI GCAGC 5 cut(s) 16, 99, 127, 271, 719
BccI CCATC 2 cut(s) 611, 850
BceAI ACGGC 1 cut(s) 108
BcgI CGANNNNNNTGC 3 cut(s) 35, 409, 443
BcnI CCSGG 1 cut(s) 64
BcoDI GTCTC 3 cut(s) 208, 429, 862
BfaI CTAG 1 cut(s) 473
BfmI CTRYAG 3 cut(s) 41, 113, 1109
BfoI RGCGCY 1 cut(s) 10
BisI GCNGC 7 cut(s) 5, 10, 113, 116, 282, 285, 708
BlsI GCNGC 7 cut(s) 6, 11, 114, 117, 283, 286, 709
BmcAI AGTACT 2 cut(s) 652, 1049
Bme1390I CCNGG 1 cut(s) 64
Bme18I GGWCC 1 cut(s) 50
BmeT110I CYCGRG 1 cut(s) 386
BmgT120I GGNCC 2 cut(s) 50, 600
BmiI GGNNCC 1 cut(s) 689
BmrFI CCNGG 1 cut(s) 64
BmrI ACTGGG 1 cut(s) 378
BmsI GCATC 3 cut(s) 485, 508, 544
BmuI ACTGGG 1 cut(s) 378
BpiI GAAGAC 1 cut(s) 935
BpuEI CTTGAG 1 cut(s) 857
BpuMI CCSGG 1 cut(s) 64
BsaAI YACGTR 1 cut(s) 1058
BsaJI CCNNGG 5 cut(s) 62, 244, 666, 691, 745
BsaWI WCCGGW 1 cut(s) 47
BsaXI ACNNNNNCTCC 4 cut(s) 240, 270, 687, 717
Bsc4I CCNNNNNNNGG 1 cut(s) 74
Bse118I RCCGGY 2 cut(s) 47, 222
Bse1I ACTGG 3 cut(s) 373, 1040, 1045
Bse3DI GCAATG 2 cut(s) 455, 786
BseDI CCNNGG 5 cut(s) 62, 244, 666, 691, 745
BseGI GGATG 5 cut(s) 142, 559, 603, 1095, 1103
BseLI CCNNNNNNNGG 1 cut(s) 74
BseMI GCAATG 2 cut(s) 455, 786
BseMII CTCAG 2 cut(s) 99, 587
BseNI ACTGG 3 cut(s) 373, 1040, 1045
BseRI GAGGAG 1 cut(s) 90
BseXI GCAGC 5 cut(s) 16, 99, 127, 271, 719
BseYI CCCAGC 1 cut(s) 502
Bsh1236I CGCG 2 cut(s) 300, 668
BshFI GGCC 5 cut(s) 67, 602, 630, 800, 817
BshTI ACCGGT 1 cut(s) 47
BsiHKCI CYCGRG 1 cut(s) 386
BsiSI CCGG 4 cut(s) 48, 64, 75, 223
BslI CCNNNNNNNGG 1 cut(s) 74
BsmAI GTCTC 3 cut(s) 208, 429, 862
BsnI GGCC 5 cut(s) 67, 602, 630, 800, 817
BsoBI CYCGRG 1 cut(s) 386
Bsp1407I TGTACA 1 cut(s) 230
Bsp143I GATC 2 cut(s) 153, 1030
Bsp19I CCATGG 1 cut(s) 691
BspACI CCGC 8 cut(s) 85, 282, 300, 666, 668, 742, 791, 860
BspANI GGCC 5 cut(s) 67, 602, 630, 800, 817
BspCNI CTCAG 2 cut(s) 100, 588
BspFNI CGCG 2 cut(s) 300, 668
BspLI GGNNCC 1 cut(s) 689
BspMAI CTGCAG 2 cut(s) 45, 117
BspPI GGATC 1 cut(s) 148
BsrDI GCAATG 2 cut(s) 455, 786
BsrFI RCCGGY 2 cut(s) 47, 222
BsrGI TGTACA 1 cut(s) 230
BsrI ACTGG 3 cut(s) 373, 1040, 1045
BssAI RCCGGY 2 cut(s) 47, 222
BssECI CCNNGG 5 cut(s) 62, 244, 666, 691, 745
BssMI GATC 2 cut(s) 153, 1030
BssSI CACGAG 1 cut(s) 1020
BssT1I CCWWGG 3 cut(s) 244, 691, 745
Bst2BI CACGAG 1 cut(s) 1020
Bst4CI ACNGT 2 cut(s) 331, 884
BstAPI GCANNNNNTGC 1 cut(s) 653
BstAUI TGTACA 1 cut(s) 230
BstBAI YACGTR 1 cut(s) 1058
BstC8I GCNNGC 3 cut(s) 25, 80, 712
BstDEI CTNAG 2 cut(s) 108, 596
BstDSI CCRYGG 2 cut(s) 666, 691
BstF5I GGATG 5 cut(s) 142, 559, 603, 1095, 1103
BstFNI CGCG 2 cut(s) 300, 668
BstH2I RGCGCY 1 cut(s) 10
BstHHI GCGC 1 cut(s) 9
BstKTI GATC 2 cut(s) 156, 1033
BstMAI GTCTC 3 cut(s) 208, 429, 862
BstMBI GATC 2 cut(s) 153, 1030
BstMWI GCNNNNNNNGC 4 cut(s) 84, 653, 707, 797
BstNSI RCATGY 2 cut(s) 82, 271
BstSCI CCNGG 1 cut(s) 62
BstSFI CTRYAG 3 cut(s) 41, 113, 1109
BstUI CGCG 2 cut(s) 300, 668
BstV1I GCAGC 5 cut(s) 16, 99, 127, 271, 719
BstV2I GAAGAC 1 cut(s) 935
BsuRI GGCC 5 cut(s) 67, 602, 630, 800, 817
BtgI CCRYGG 2 cut(s) 666, 691
BtgZI GCGATG 1 cut(s) 241
BtsCI GGATG 5 cut(s) 142, 559, 603, 1095, 1103
Cac8I GCNNGC 3 cut(s) 25, 80, 712
CfoI GCGC 1 cut(s) 9
Cfr10I RCCGGY 2 cut(s) 47, 222
Cfr13I GGNCC 2 cut(s) 50, 600
Cfr42I CCGCGG 1 cut(s) 669
CpoI CGGWCCG 1 cut(s) 50
CseI GACGC 1 cut(s) 107
Csp6I GTAC 6 cut(s) 231, 405, 571, 651, 1037, 1048
CspAI ACCGGT 1 cut(s) 47
CspCI CAANNNNNGTGG 2 cut(s) 865, 900
CspI CGGWCCG 1 cut(s) 50
CviAII CATG 7 cut(s) 79, 268, 578, 632, 692, 715, 829
CviQI GTAC 6 cut(s) 231, 405, 571, 651, 1037, 1048
DdeI CTNAG 2 cut(s) 108, 596
DpnI GATC 2 cut(s) 155, 1032
DpnII GATC 2 cut(s) 153, 1030
DrdI GACNNNNNNGTC 1 cut(s) 52
DseDI GACNNNNNNGTC 1 cut(s) 52
EaeI YGGCCR 1 cut(s) 628
EciI GGCGGA 1 cut(s) 875
Eco130I CCWWGG 3 cut(s) 244, 691, 745
Eco147I AGGCCT 1 cut(s) 817
Eco47I GGWCC 1 cut(s) 50
Eco47III AGCGCT 1 cut(s) 8
Eco88I CYCGRG 1 cut(s) 386
EcoRI GAATTC 1 cut(s) 524
EcoT14I CCWWGG 3 cut(s) 244, 691, 745
EcoT22I ATGCAT 1 cut(s) 559
ErhI CCWWGG 3 cut(s) 244, 691, 745
FaeI CATG 7 cut(s) 82, 271, 581, 635, 695, 718, 832
FatI CATG 7 cut(s) 78, 267, 577, 631, 691, 714, 828
FauI CCCGC 1 cut(s) 92
Fnu4HI GCNGC 7 cut(s) 5, 10, 113, 116, 282, 285, 708
FokI GGATG 5 cut(s) 129, 566, 590, 1082, 1090
Fsp4HI GCNGC 7 cut(s) 5, 10, 113, 116, 282, 285, 708
FspBI CTAG 1 cut(s) 473
GlaI GCGC 1 cut(s) 8
GluI GCNGC 7 cut(s) 5, 10, 113, 116, 282, 285, 708
GsaI CCCAGC 1 cut(s) 506
HaeII RGCGCY 1 cut(s) 10
HaeIII GGCC 5 cut(s) 67, 602, 630, 800, 817
HapII CCGG 4 cut(s) 48, 64, 75, 223
HgaI GACGC 1 cut(s) 107
HhaI GCGC 1 cut(s) 9
Hin1II CATG 7 cut(s) 82, 271, 581, 635, 695, 718, 832
Hin6I GCGC 1 cut(s) 7
HinP1I GCGC 1 cut(s) 7
HincII GTYRAC 1 cut(s) 781
HindII GTYRAC 1 cut(s) 781
HinfI GANTC 9 cut(s) 29, 209, 319, 347, 761, 824, 832, 978, 1016
HpaII CCGG 4 cut(s) 48, 64, 75, 223
HphI GGTGA 1 cut(s) 275
Hpy166II GTNNAC 3 cut(s) 140, 593, 781
Hpy188I TCNGA 3 cut(s) 58, 318, 324
Hpy188III TCNNGA 6 cut(s) 213, 388, 480, 821, 836, 1013
Hpy8I GTNNAC 3 cut(s) 140, 593, 781
Hpy99I CGWCG 4 cut(s) 23, 98, 123, 328
HpyAV CCTTC 3 cut(s) 305, 581, 960
HpyCH4III ACNGT 2 cut(s) 331, 884
HpyCH4IV ACGT 2 cut(s) 623, 1057
HpyF10VI GCNNNNNNNGC 4 cut(s) 84, 653, 707, 797
HpyF3I CTNAG 2 cut(s) 108, 596
HpySE526I ACGT 2 cut(s) 623, 1057
Hsp92II CATG 7 cut(s) 82, 271, 581, 635, 695, 718, 832
HspAI GCGC 1 cut(s) 7
KspI CCGCGG 1 cut(s) 669
Kzo9I GATC 2 cut(s) 153, 1030
LmnI GCTCC 1 cut(s) 103
Lsp1109I GCAGC 5 cut(s) 16, 99, 127, 271, 719
LweI GCATC 3 cut(s) 485, 508, 544
MaeI CTAG 1 cut(s) 473
MaeII ACGT 2 cut(s) 623, 1057
MaeIII GTNAC 2 cut(s) 263, 272
MalI GATC 2 cut(s) 155, 1032
MboI GATC 2 cut(s) 153, 1030
MboII GAAGA 3 cut(s) 342, 403, 935
MlsI TGGCCA 1 cut(s) 630
MluCI AATT 5 cut(s) 307, 495, 524, 610, 911
MluNI TGGCCA 1 cut(s) 630
MlyI GAGTC 4 cut(s) 23, 218, 826, 972
MmeI TCCRAC 2 cut(s) 347, 731
MnlI CCTC 9 cut(s) 26, 78, 111, 160, 167, 242, 537, 591, 828
Mox20I TGGCCA 1 cut(s) 630
Mph1103I ATGCAT 1 cut(s) 559
MroXI GAANNNNTTC 1 cut(s) 686
MscI TGGCCA 1 cut(s) 630
MseI TTAA 7 cut(s) 306, 375, 560, 609, 729, 983, 1068
MslI CAYNNNNRTG 2 cut(s) 182, 719
Msp20I TGGCCA 1 cut(s) 630
MspA1I CMGCKG 3 cut(s) 284, 668, 710
MspI CCGG 4 cut(s) 48, 64, 75, 223
MspR9I CCNGG 1 cut(s) 64
MvnI CGCG 2 cut(s) 300, 668
MwoI GCNNNNNNNGC 4 cut(s) 84, 653, 707, 797
NciI CCSGG 1 cut(s) 64
NcoI CCATGG 1 cut(s) 691
NdeII GATC 2 cut(s) 153, 1030
NlaIII CATG 7 cut(s) 82, 271, 581, 635, 695, 718, 832
NlaIV GGNNCC 1 cut(s) 689
NmuCI GTSAC 2 cut(s) 263, 272
NsiI ATGCAT 1 cut(s) 559
NspI RCATGY 2 cut(s) 82, 271
PaeI GCATGC 1 cut(s) 82
PceI AGGCCT 1 cut(s) 817
PciI ACATGT 1 cut(s) 267
PcsI WCGNNNNNNNCGW 1 cut(s) 24
PdmI GAANNNNTTC 1 cut(s) 686
PfeI GAWTC 5 cut(s) 319, 347, 761, 824, 1016
PinAI ACCGGT 1 cut(s) 47
PkrI GCNGC 7 cut(s) 6, 11, 114, 117, 283, 286, 709
PleI GAGTC 4 cut(s) 23, 217, 826, 972
PpsI GAGTC 4 cut(s) 23, 217, 826, 972
Ppu21I YACGTR 1 cut(s) 1058
PscI ACATGT 1 cut(s) 267
PshBI ATTAAT 1 cut(s) 560
PspFI CCCAGC 1 cut(s) 502
PspN4I GGNNCC 1 cut(s) 689
PspPI GGNCC 2 cut(s) 50, 600
PstI CTGCAG 2 cut(s) 45, 117
PvuII CAGCTG 1 cut(s) 710
RsaI GTAC 6 cut(s) 232, 406, 572, 652, 1038, 1049
RsaNI GTAC 6 cut(s) 231, 405, 571, 651, 1037, 1048
RseI CAYNNNNRTG 2 cut(s) 182, 719
Rsr2I CGGWCCG 1 cut(s) 50
RsrII CGGWCCG 1 cut(s) 50
SacII CCGCGG 1 cut(s) 669
SaqAI TTAA 7 cut(s) 306, 375, 560, 609, 729, 983, 1068
SatI GCNGC 7 cut(s) 5, 10, 113, 116, 282, 285, 708
Sau3AI GATC 2 cut(s) 153, 1030
Sau96I GGNCC 2 cut(s) 50, 600
ScaI AGTACT 2 cut(s) 652, 1049
SchI GAGTC 4 cut(s) 23, 218, 826, 972
ScrFI CCNGG 1 cut(s) 64
SfaNI GCATC 3 cut(s) 485, 508, 544
SfcI CTRYAG 3 cut(s) 41, 113, 1109
Sfr303I CCGCGG 1 cut(s) 669
SgrBI CCGCGG 1 cut(s) 669
SinI GGWCC 1 cut(s) 50
SmiMI CAYNNNNRTG 2 cut(s) 182, 719
SmlI CTYRAG 1 cut(s) 836
SmoI CTYRAG 1 cut(s) 836
SphI GCATGC 1 cut(s) 82
Sse9I AATT 5 cut(s) 307, 495, 524, 610, 911
SseBI AGGCCT 1 cut(s) 817
SsiI CCGC 8 cut(s) 85, 282, 300, 666, 668, 742, 791, 860
SspMI CTAG 1 cut(s) 473
StuI AGGCCT 1 cut(s) 817
StyD4I CCNGG 1 cut(s) 62
StyI CCWWGG 3 cut(s) 244, 691, 745
TaaI ACNGT 2 cut(s) 331, 884
TaiI ACGT 2 cut(s) 626, 1060
TaqI TCGA 3 cut(s) 103, 152, 212
TasI AATT 5 cut(s) 307, 495, 524, 610, 911
TatI WGTACW 3 cut(s) 230, 650, 1047
TauI GCSGC 1 cut(s) 284
TfiI GAWTC 5 cut(s) 319, 347, 761, 824, 1016
Tru1I TTAA 7 cut(s) 306, 375, 560, 609, 729, 983, 1068
Tru9I TTAA 7 cut(s) 306, 375, 560, 609, 729, 983, 1068
TseFI GTSAC 2 cut(s) 263, 272
TseI GCWGC 6 cut(s) 4, 9, 112, 115, 284, 707
Tsp45I GTSAC 2 cut(s) 263, 272
TspDTI ATGAA 2 cut(s) 200, 301
TspGWI ACGGA 3 cut(s) 42, 60, 82
VpaK11BI GGWCC 1 cut(s) 50
VspI ATTAAT 1 cut(s) 560
XapI RAATTY 1 cut(s) 524
XceI RCATGY 2 cut(s) 82, 271
XcmI CCANNNNNNNNNTGG 2 cut(s) 169, 638
XmnI GAANNNNTTC 1 cut(s) 686
XspI CTAG 1 cut(s) 473
ZrmI AGTACT 2 cut(s) 652, 1049
Zsp2I ATGCAT 1 cut(s) 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.