Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006294

Physical Location & Seq

Genomic Coordinates Reverse (-)

11329220 .. 11332199

Gene Structure 2980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47374

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGACACTCTTATGAAAGTGTTTGACAAGGCTATTGAGTCGAGACTTGACCGGCGATGTACATTTATTCCGACGACTGTTATGTCACAGGTTGATTCTTCTGCTGGGGACAAAACTGGGTTTAACCACTCTCTTGGGAAGAACTTGATTGGTACTATTTACCAACCCAAGTCTCTGCTTATTGACACAGACACAATAAACACATTGCCAGATAGGGAATTAGCATCAGGACTTGCAGAGGTAATTGAACTGGGGCTTGTTAGAGATGCAGAATTCTTTGAGTGGCAGGAGAGGAATATGGATGTATTAATATCAAGGGATCCAAATGCTCTGGCTTATGCTATAAAGCGCTCATGTGAAATGAAGGCTGAGACTGTGTCCTTGGATGAGCTGGAAGGTGGACTGAGGGCCATCCTTAATTTTGGTCATACGTTTGGCCATGCAATAGAAAATGGGAAGTGGTTCCATGGAGAAGCTGTTGCAGCTGGCATGCGAGTTGACAACATAGTGGAACAGGCCAACTTACCTATTGGCCCTCCTGAATCCATGACTCTTGAGACGTTCAGGTCTTTGATGGCGCTGAATAAGCTGATGGGTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003856 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016838 GO:0019632 GO:0019752 GO:0032787 GO:0033587 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0046394 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

DHQ_synthase

Protein Analysis

200

Amino Acids

22.15

Weight (kDa)

4.95

Isoelectric Point (pI)

40.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHQ_synthase	PF01761	21 - 75	1.8e-17	3-dehydroquinate synthase N-terminal
DHQS_C	PF24621	77 - 171	5.4e-33	3-dehydroquinate synthase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006294)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66120 AT5G66120
fragaria_vesca	FvH4_1g11430
malus_domestica	MD15G1242600.v1.1
prunus_persica	Prupe.7G171600_v2.0.a1
pyrus_communis	pycom02g09850 pycom15g21380
rosa_chinensis	RchiOBHm_Chr2g0099011 RchiOBHm_Chr2g0099021
rosa_laevigata	RLG00000016840
rosa_multiflora	Rmu_co8359771.1_g000001 Rmu_sc0000577.1_g000012 Rmu_sc0009422.1_g000001
rosa_roxburghii	Rroxscaffold_2G00143490 Rroxscaffold_2G00143510
rosa_rugosa	Rorug02G0075600 Rorug02G0075700
rosa_samantha	Rh2AG125000 Rh2AG125100 Rh2BG128200 Rh2BG128300 Rh2CG129200 Rh2CG129300 Rh2DG129400 Rh2DG129500
rosa_wichuraiana	Rw2G009610 Rw2G009620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	82, 565
AclWI	GGATC	2 cut(s)	314, 327
AcoI	YGGCCR	1 cut(s)	436
AcsI	RAATTY	1 cut(s)	272
AfaI	GTAC	2 cut(s)	61, 154
AfeI	AGCGCT	1 cut(s)	350
AgsI	TTSAA	1 cut(s)	248
AluBI	AGCT	4 cut(s)	391, 476, 485, 589
AluI	AGCT	4 cut(s)	391, 476, 485, 589
Alw26I	GTCTC	4 cut(s)	37, 177, 365, 551
AlwI	GGATC	2 cut(s)	314, 327
Aor51HI	AGCGCT	1 cut(s)	350
AoxI	GGCC	4 cut(s)	408, 436, 516, 532
ApeKI	GCWGC	1 cut(s)	482
ApoI	RAATTY	1 cut(s)	272
AseI	ATTAAT	1 cut(s)	308
Asp700I	GAANNNNTTC	1 cut(s)	461
AspLEI	GCGC	2 cut(s)	351, 580
AspS9I	GGNCC	2 cut(s)	408, 533
BalI	TGGCCA	1 cut(s)	438
BamHI	GGATCC	1 cut(s)	319
BbvI	GCAGC	1 cut(s)	494
BccI	CCATC	3 cut(s)	419, 568, 586
BcoDI	GTCTC	4 cut(s)	37, 177, 365, 551
BfoI	RGCGCY	2 cut(s)	352, 581
BisI	GCNGC	1 cut(s)	483
BlsI	GCNGC	1 cut(s)	484
BmgT120I	GGNCC	2 cut(s)	408, 533
BmiI	GGNNCC	2 cut(s)	321, 464
BmrI	ACTGGG	2 cut(s)	126, 260
BmsI	GCATC	2 cut(s)	233, 256
BmuI	ACTGGG	2 cut(s)	126, 260
BpuEI	CTTGAG	1 cut(s)	575
BsaJI	CCNNGG	2 cut(s)	381, 466
BsaXI	ACNNNNNCTCC	2 cut(s)	462, 492
Bse118I	RCCGGY	1 cut(s)	51
Bse1I	ACTGG	2 cut(s)	121, 255
Bse3DI	GCAATG	1 cut(s)	203
BseDI	CCNNGG	2 cut(s)	381, 466
BseGI	GGATG	3 cut(s)	307, 391, 411
BseMI	GCAATG	1 cut(s)	203
BseMII	CTCAG	2 cut(s)	360, 395
BseNI	ACTGG	2 cut(s)	121, 255
BseXI	GCAGC	1 cut(s)	494
BseYI	CCCAGC	1 cut(s)	104
BshFI	GGCC	4 cut(s)	410, 438, 518, 534
BsiSI	CCGG	1 cut(s)	52
BslFI	GGGAC	1 cut(s)	122
BsmAI	GTCTC	4 cut(s)	37, 177, 365, 551
BsmBI	CGTCTC	1 cut(s)	551
BsmFI	GGGAC	1 cut(s)	122
BsnI	GGCC	4 cut(s)	410, 438, 518, 534
Bsp1407I	TGTACA	1 cut(s)	59
Bsp143I	GATC	1 cut(s)	319
Bsp19I	CCATGG	1 cut(s)	466
BspANI	GGCC	4 cut(s)	410, 438, 518, 534
BspCNI	CTCAG	2 cut(s)	361, 396
BspLI	GGNNCC	2 cut(s)	321, 464
BspPI	GGATC	2 cut(s)	314, 327
BsrDI	GCAATG	1 cut(s)	203
BsrFI	RCCGGY	1 cut(s)	51
BsrGI	TGTACA	1 cut(s)	59
BsrI	ACTGG	2 cut(s)	121, 255
BssAI	RCCGGY	1 cut(s)	51
BssECI	CCNNGG	2 cut(s)	381, 466
BssMI	GATC	1 cut(s)	319
BssT1I	CCWWGG	2 cut(s)	381, 466
Bst4CI	ACNGT	2 cut(s)	79, 376
BstAUI	TGTACA	1 cut(s)	59
BstC8I	GCNNGC	2 cut(s)	487, 491
BstDEI	CTNAG	2 cut(s)	369, 404
BstDSI	CCRYGG	1 cut(s)	466
BstF5I	GGATG	3 cut(s)	307, 391, 411
BstH2I	RGCGCY	2 cut(s)	352, 581
BstHHI	GCGC	2 cut(s)	351, 580
BstKTI	GATC	1 cut(s)	322
BstMAI	GTCTC	4 cut(s)	37, 177, 365, 551
BstMBI	GATC	1 cut(s)	319
BstMWI	GCNNNNNNNGC	2 cut(s)	482, 586
BstNSI	RCATGY	1 cut(s)	493
BstV1I	GCAGC	1 cut(s)	494
BstX2I	RGATCY	1 cut(s)	319
BstXI	CCANNNNNNTGG	1 cut(s)	134
BstYI	RGATCY	1 cut(s)	319
BsuRI	GGCC	4 cut(s)	410, 438, 518, 534
BtgI	CCRYGG	1 cut(s)	466
BtgZI	GCGATG	1 cut(s)	70
BtsCI	GGATG	3 cut(s)	307, 391, 411
Cac8I	GCNNGC	2 cut(s)	487, 491
CfoI	GCGC	2 cut(s)	351, 580
Cfr10I	RCCGGY	1 cut(s)	51
Cfr13I	GGNCC	2 cut(s)	408, 533
Csp6I	GTAC	2 cut(s)	60, 153
CviAII	CATG	5 cut(s)	354, 440, 467, 490, 547
CviQI	GTAC	2 cut(s)	60, 153
DdeI	CTNAG	2 cut(s)	369, 404
DpnI	GATC	1 cut(s)	321
DpnII	GATC	1 cut(s)	319
DrdI	GACNNNNNNGTC	2 cut(s)	82, 565
DseDI	GACNNNNNNGTC	2 cut(s)	82, 565
EaeI	YGGCCR	1 cut(s)	436
Eco130I	CCWWGG	2 cut(s)	381, 466
Eco47III	AGCGCT	1 cut(s)	350
EcoRI	GAATTC	1 cut(s)	272
EcoT14I	CCWWGG	2 cut(s)	381, 466
ErhI	CCWWGG	2 cut(s)	381, 466
Esp3I	CGTCTC	1 cut(s)	551
FaeI	CATG	5 cut(s)	357, 443, 470, 493, 550
FaqI	GGGAC	1 cut(s)	122
FatI	CATG	5 cut(s)	353, 439, 466, 489, 546
Fnu4HI	GCNGC	1 cut(s)	483
FokI	GGATG	3 cut(s)	314, 398, 398
Fsp4HI	GCNGC	1 cut(s)	483
GlaI	GCGC	2 cut(s)	350, 579
GluI	GCNGC	1 cut(s)	483
GsaI	CCCAGC	1 cut(s)	108
HaeII	RGCGCY	2 cut(s)	352, 581
HaeIII	GGCC	4 cut(s)	410, 438, 518, 534
HapII	CCGG	1 cut(s)	52
HhaI	GCGC	2 cut(s)	351, 580
Hin1II	CATG	5 cut(s)	357, 443, 470, 493, 550
Hin6I	GCGC	2 cut(s)	349, 578
HinP1I	GCGC	2 cut(s)	349, 578
HincII	GTYRAC	1 cut(s)	499
HindII	GTYRAC	1 cut(s)	499
HinfI	GANTC	4 cut(s)	38, 95, 542, 550
HpaII	CCGG	1 cut(s)	52
Hpy166II	GTNNAC	2 cut(s)	401, 499
Hpy188I	TCNGA	1 cut(s)	72
Hpy188III	TCNNGA	4 cut(s)	42, 228, 539, 554
Hpy8I	GTNNAC	2 cut(s)	401, 499
Hpy99I	CGWCG	1 cut(s)	76
HpyAV	CCTTC	2 cut(s)	358, 389
HpyCH4III	ACNGT	2 cut(s)	79, 376
HpyCH4IV	ACGT	2 cut(s)	431, 560
HpyCH4V	TGCA	4 cut(s)	236, 269, 443, 482
HpyF10VI	GCNNNNNNNGC	2 cut(s)	482, 586
HpyF3I	CTNAG	2 cut(s)	369, 404
HpySE526I	ACGT	2 cut(s)	431, 560
Hsp92II	CATG	5 cut(s)	357, 443, 470, 493, 550
HspAI	GCGC	2 cut(s)	349, 578
Kzo9I	GATC	1 cut(s)	319
Lsp1109I	GCAGC	1 cut(s)	494
LweI	GCATC	2 cut(s)	233, 256
MaeII	ACGT	2 cut(s)	431, 560
MaeIII	GTNAC	1 cut(s)	84
MalI	GATC	1 cut(s)	321
MboI	GATC	1 cut(s)	319
MboII	GAAGA	2 cut(s)	90, 151
MflI	RGATCY	1 cut(s)	319
MlsI	TGGCCA	1 cut(s)	438
MluCI	AATT	4 cut(s)	218, 243, 272, 418
MluNI	TGGCCA	1 cut(s)	438
MlyI	GAGTC	2 cut(s)	47, 544
MmeI	TCCRAC	1 cut(s)	95
MnlI	CCTC	4 cut(s)	232, 285, 399, 546
Mox20I	TGGCCA	1 cut(s)	438
MroXI	GAANNNNTTC	1 cut(s)	461
MscI	TGGCCA	1 cut(s)	438
MseI	TTAA	3 cut(s)	123, 308, 417
MslI	CAYNNNNRTG	1 cut(s)	11
Msp20I	TGGCCA	1 cut(s)	438
MspA1I	CMGCKG	1 cut(s)	485
MspI	CCGG	1 cut(s)	52
MwoI	GCNNNNNNNGC	2 cut(s)	482, 586
NcoI	CCATGG	1 cut(s)	466
NdeII	GATC	1 cut(s)	319
NlaIII	CATG	5 cut(s)	357, 443, 470, 493, 550
NlaIV	GGNNCC	2 cut(s)	321, 464
NmuCI	GTSAC	1 cut(s)	84
NspI	RCATGY	1 cut(s)	493
PaeI	GCATGC	1 cut(s)	493
PdmI	GAANNNNTTC	1 cut(s)	461
PfeI	GAWTC	2 cut(s)	95, 542
PflFI	GACNNNGTC	1 cut(s)	376
PkrI	GCNGC	1 cut(s)	484
PleI	GAGTC	2 cut(s)	46, 544
PpsI	GAGTC	2 cut(s)	46, 544
PshBI	ATTAAT	1 cut(s)	308
PspFI	CCCAGC	1 cut(s)	104
PspN4I	GGNNCC	2 cut(s)	321, 464
PspPI	GGNCC	2 cut(s)	408, 533
PsuI	RGATCY	1 cut(s)	319
PsyI	GACNNNGTC	1 cut(s)	376
PvuII	CAGCTG	1 cut(s)	485
RsaI	GTAC	2 cut(s)	61, 154
RsaNI	GTAC	2 cut(s)	60, 153
RseI	CAYNNNNRTG	1 cut(s)	11
SaqAI	TTAA	3 cut(s)	123, 308, 417
SatI	GCNGC	1 cut(s)	483
Sau3AI	GATC	1 cut(s)	319
Sau96I	GGNCC	2 cut(s)	408, 533
SchI	GAGTC	2 cut(s)	47, 544
SfaNI	GCATC	2 cut(s)	233, 256
SmiMI	CAYNNNNRTG	1 cut(s)	11
SmlI	CTYRAG	1 cut(s)	554
SmoI	CTYRAG	1 cut(s)	554
SphI	GCATGC	1 cut(s)	493
Sse9I	AATT	4 cut(s)	218, 243, 272, 418
StyI	CCWWGG	2 cut(s)	381, 466
TaaI	ACNGT	2 cut(s)	79, 376
TaiI	ACGT	2 cut(s)	434, 563
TaqI	TCGA	1 cut(s)	41
TasI	AATT	4 cut(s)	218, 243, 272, 418
TatI	WGTACW	1 cut(s)	59
TfiI	GAWTC	2 cut(s)	95, 542
Tru1I	TTAA	3 cut(s)	123, 308, 417
Tru9I	TTAA	3 cut(s)	123, 308, 417
TseFI	GTSAC	1 cut(s)	84
TseI	GCWGC	1 cut(s)	482
Tsp45I	GTSAC	1 cut(s)	84
TspDTI	ATGAA	2 cut(s)	29, 377
Tth111I	GACNNNGTC	1 cut(s)	376
VspI	ATTAAT	1 cut(s)	308
XapI	RAATTY	1 cut(s)	272
XceI	RCATGY	1 cut(s)	493
XmnI	GAANNNNTTC	1 cut(s)	461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.