Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0006294

Physical Location & Seq

Genomic Coordinates Reverse (-)

10948467 .. 10950279

Gene Structure 1813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG129400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGAAGATGAAGGCCAAGGTTGATTCTTCTGCTGGGGACAAAACTGGGTTTAACCACTCTCTTGGGAAGAACTTGATTGGTACTATTTACCAACCCAAGTCTCTGCTTATTGACACAGACACAATAAACACATTGCCAGATAGGGAATTAGCATCAGGACTTGCAGAGGTAATTGAACTGGGGCTTGTTAGAGATGCAGAATTCTTTGAGTGGCAGGAGAGGAATATGGATGTATTAATATCAAGGGATCCAAATGCTCTGGCTTATGCTATAAAGCGCTCATGTGAAATGAAGGCTGAGACTGTGTCCTTGGATGAGCTGGAAGGTGGACTGAGGGCCATCCTTAATTTTGGTCATACGTTTGGCCATGCAATAGAAAATGGGAAGTGGTTCCATGGAGAAGCTGTTGCAGCTGGCATGGTAATGACATATATGATCCTCTCCCTAGCTACGGGATTCGCATGCACTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003856 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016838 GO:0019632 GO:0019752 GO:0032787 GO:0033587 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0046394 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

DHQ_synthase

Protein Analysis

157

Amino Acids

17.17

Weight (kDa)

5.17

Isoelectric Point (pI)

33.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHQ_synthase	PF01761	5 - 51	1.6e-13	3-dehydroquinate synthase N-terminal
DHQS_C	PF24621	53 - 146	2.4e-34	3-dehydroquinate synthase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006294)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66120 AT5G66120
fragaria_vesca	FvH4_1g11430
malus_domestica	MD15G1242600.v1.1
prunus_persica	Prupe.7G171600_v2.0.a1
pyrus_communis	pycom02g09850 pycom15g21380
rosa_chinensis	RchiOBHm_Chr2g0099011 RchiOBHm_Chr2g0099021
rosa_laevigata	RLG00000016840
rosa_multiflora	Rmu_co8359771.1_g000001 Rmu_sc0000577.1_g000012 Rmu_sc0009422.1_g000001
rosa_roxburghii	Rroxscaffold_2G00143490 Rroxscaffold_2G00143510
rosa_rugosa	Rorug02G0075600 Rorug02G0075700
rosa_samantha	Rh2AG125000 Rh2AG125100 Rh2BG128200 Rh2BG128300 Rh2CG129200 Rh2CG129300 Rh2DG129400 Rh2DG129500
rosa_wichuraiana	Rw2G009610 Rw2G009620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	242, 255, 430
AcoI	YGGCCR	1 cut(s)	364
AcsI	RAATTY	1 cut(s)	200
AfaI	GTAC	1 cut(s)	82
AfeI	AGCGCT	1 cut(s)	278
AfiI	CCNNNNNNNGG	1 cut(s)	451
AgsI	TTSAA	1 cut(s)	176
AluBI	AGCT	5 cut(s)	319, 404, 413, 449, 471
AluI	AGCT	5 cut(s)	319, 404, 413, 449, 471
Alw26I	GTCTC	2 cut(s)	105, 293
AlwI	GGATC	3 cut(s)	242, 255, 430
Aor51HI	AGCGCT	1 cut(s)	278
AoxI	GGCC	3 cut(s)	12, 336, 364
ApeKI	GCWGC	1 cut(s)	410
ApoI	RAATTY	1 cut(s)	200
AseI	ATTAAT	1 cut(s)	236
Asp700I	GAANNNNTTC	1 cut(s)	389
AspLEI	GCGC	1 cut(s)	279
AspS9I	GGNCC	1 cut(s)	336
BalI	TGGCCA	1 cut(s)	366
BamHI	GGATCC	1 cut(s)	247
BbvI	GCAGC	1 cut(s)	422
BccI	CCATC	1 cut(s)	347
BcoDI	GTCTC	2 cut(s)	105, 293
BfaI	CTAG	3 cut(s)	446, 468, 472
BfoI	RGCGCY	1 cut(s)	280
BisI	GCNGC	1 cut(s)	411
BlsI	GCNGC	1 cut(s)	412
BmgT120I	GGNCC	1 cut(s)	336
BmiI	GGNNCC	2 cut(s)	249, 392
BmrI	ACTGGG	2 cut(s)	54, 188
BmsI	GCATC	2 cut(s)	161, 184
BmuI	ACTGGG	2 cut(s)	54, 188
BsaJI	CCNNGG	3 cut(s)	15, 309, 394
BsaXI	ACNNNNNCTCC	2 cut(s)	390, 420
Bsc4I	CCNNNNNNNGG	1 cut(s)	451
Bse1I	ACTGG	2 cut(s)	49, 183
Bse3DI	GCAATG	1 cut(s)	131
BseDI	CCNNGG	3 cut(s)	15, 309, 394
BseGI	GGATG	3 cut(s)	235, 319, 339
BseLI	CCNNNNNNNGG	1 cut(s)	451
BseMI	GCAATG	1 cut(s)	131
BseMII	CTCAG	2 cut(s)	288, 323
BseNI	ACTGG	2 cut(s)	49, 183
BseXI	GCAGC	1 cut(s)	422
BseYI	CCCAGC	1 cut(s)	32
BshFI	GGCC	3 cut(s)	14, 338, 366
BslFI	GGGAC	1 cut(s)	50
BslI	CCNNNNNNNGG	1 cut(s)	451
BsmAI	GTCTC	2 cut(s)	105, 293
BsmFI	GGGAC	1 cut(s)	50
BsnI	GGCC	3 cut(s)	14, 338, 366
Bsp143I	GATC	2 cut(s)	247, 435
Bsp19I	CCATGG	1 cut(s)	394
BspANI	GGCC	3 cut(s)	14, 338, 366
BspCNI	CTCAG	2 cut(s)	289, 324
BspLI	GGNNCC	2 cut(s)	249, 392
BspPI	GGATC	3 cut(s)	242, 255, 430
BsrDI	GCAATG	1 cut(s)	131
BsrI	ACTGG	2 cut(s)	49, 183
BssECI	CCNNGG	3 cut(s)	15, 309, 394
BssMI	GATC	2 cut(s)	247, 435
BssT1I	CCWWGG	3 cut(s)	15, 309, 394
Bst4CI	ACNGT	1 cut(s)	304
BstC8I	GCNNGC	2 cut(s)	415, 463
BstDEI	CTNAG	2 cut(s)	297, 332
BstDSI	CCRYGG	1 cut(s)	394
BstF5I	GGATG	3 cut(s)	235, 319, 339
BstH2I	RGCGCY	1 cut(s)	280
BstHHI	GCGC	1 cut(s)	279
BstKTI	GATC	2 cut(s)	250, 438
BstMAI	GTCTC	2 cut(s)	105, 293
BstMBI	GATC	2 cut(s)	247, 435
BstMWI	GCNNNNNNNGC	1 cut(s)	410
BstNSI	RCATGY	1 cut(s)	465
BstV1I	GCAGC	1 cut(s)	422
BstX2I	RGATCY	1 cut(s)	247
BstXI	CCANNNNNNTGG	1 cut(s)	62
BstYI	RGATCY	1 cut(s)	247
BsuRI	GGCC	3 cut(s)	14, 338, 366
BtgI	CCRYGG	1 cut(s)	394
BtsCI	GGATG	3 cut(s)	235, 319, 339
Cac8I	GCNNGC	2 cut(s)	415, 463
CfoI	GCGC	1 cut(s)	279
Cfr13I	GGNCC	1 cut(s)	336
Csp6I	GTAC	1 cut(s)	81
CviAII	CATG	5 cut(s)	282, 368, 395, 418, 462
CviQI	GTAC	1 cut(s)	81
DdeI	CTNAG	2 cut(s)	297, 332
DpnI	GATC	2 cut(s)	249, 437
DpnII	GATC	2 cut(s)	247, 435
EaeI	YGGCCR	1 cut(s)	364
Eco130I	CCWWGG	3 cut(s)	15, 309, 394
Eco47III	AGCGCT	1 cut(s)	278
EcoRI	GAATTC	1 cut(s)	200
EcoT14I	CCWWGG	3 cut(s)	15, 309, 394
ErhI	CCWWGG	3 cut(s)	15, 309, 394
FaeI	CATG	5 cut(s)	285, 371, 398, 421, 465
FaqI	GGGAC	1 cut(s)	50
FatI	CATG	5 cut(s)	281, 367, 394, 417, 461
Fnu4HI	GCNGC	1 cut(s)	411
FokI	GGATG	3 cut(s)	242, 326, 326
Fsp4HI	GCNGC	1 cut(s)	411
FspBI	CTAG	3 cut(s)	446, 468, 472
GlaI	GCGC	1 cut(s)	278
GluI	GCNGC	1 cut(s)	411
GsaI	CCCAGC	1 cut(s)	36
HaeII	RGCGCY	1 cut(s)	280
HaeIII	GGCC	3 cut(s)	14, 338, 366
HhaI	GCGC	1 cut(s)	279
Hin1II	CATG	5 cut(s)	285, 371, 398, 421, 465
Hin6I	GCGC	1 cut(s)	277
HinP1I	GCGC	1 cut(s)	277
HinfI	GANTC	2 cut(s)	23, 456
Hpy166II	GTNNAC	1 cut(s)	329
Hpy188III	TCNNGA	1 cut(s)	156
Hpy8I	GTNNAC	1 cut(s)	329
HpyAV	CCTTC	3 cut(s)	4, 286, 317
HpyCH4III	ACNGT	1 cut(s)	304
HpyCH4IV	ACGT	1 cut(s)	359
HpyCH4V	TGCA	5 cut(s)	164, 197, 371, 410, 465
HpyF10VI	GCNNNNNNNGC	1 cut(s)	410
HpyF3I	CTNAG	2 cut(s)	297, 332
HpySE526I	ACGT	1 cut(s)	359
Hsp92II	CATG	5 cut(s)	285, 371, 398, 421, 465
HspAI	GCGC	1 cut(s)	277
Kzo9I	GATC	2 cut(s)	247, 435
LpnPI	CCDG	9 cut(s)	18, 30, 141, 150, 164, 200, 245, 305, 399
Lsp1109I	GCAGC	1 cut(s)	422
LweI	GCATC	2 cut(s)	161, 184
MaeI	CTAG	3 cut(s)	446, 468, 472
MaeII	ACGT	1 cut(s)	359
MalI	GATC	2 cut(s)	249, 437
MboI	GATC	2 cut(s)	247, 435
MboII	GAAGA	3 cut(s)	16, 18, 79
MflI	RGATCY	1 cut(s)	247
MlsI	TGGCCA	1 cut(s)	366
MluCI	AATT	4 cut(s)	146, 171, 200, 346
MluNI	TGGCCA	1 cut(s)	366
MnlI	CCTC	4 cut(s)	160, 213, 327, 449
Mox20I	TGGCCA	1 cut(s)	366
MroXI	GAANNNNTTC	1 cut(s)	389
MscI	TGGCCA	1 cut(s)	366
MseI	TTAA	3 cut(s)	51, 236, 345
MslI	CAYNNNNRTG	1 cut(s)	422
Msp20I	TGGCCA	1 cut(s)	366
MspA1I	CMGCKG	1 cut(s)	413
MwoI	GCNNNNNNNGC	1 cut(s)	410
NcoI	CCATGG	1 cut(s)	394
NdeII	GATC	2 cut(s)	247, 435
NlaIII	CATG	5 cut(s)	285, 371, 398, 421, 465
NlaIV	GGNNCC	2 cut(s)	249, 392
NspI	RCATGY	1 cut(s)	465
PaeI	GCATGC	1 cut(s)	465
PdmI	GAANNNNTTC	1 cut(s)	389
PfeI	GAWTC	2 cut(s)	23, 456
PflFI	GACNNNGTC	1 cut(s)	304
PkrI	GCNGC	1 cut(s)	412
PshBI	ATTAAT	1 cut(s)	236
PspFI	CCCAGC	1 cut(s)	32
PspN4I	GGNNCC	2 cut(s)	249, 392
PspPI	GGNCC	1 cut(s)	336
PsuI	RGATCY	1 cut(s)	247
PsyI	GACNNNGTC	1 cut(s)	304
PvuII	CAGCTG	1 cut(s)	413
RsaI	GTAC	1 cut(s)	82
RsaNI	GTAC	1 cut(s)	81
RseI	CAYNNNNRTG	1 cut(s)	422
SaqAI	TTAA	3 cut(s)	51, 236, 345
SatI	GCNGC	1 cut(s)	411
Sau3AI	GATC	2 cut(s)	247, 435
Sau96I	GGNCC	1 cut(s)	336
SetI	ASST	9 cut(s)	21, 171, 321, 328, 362, 406, 415, 451, 473
SfaNI	GCATC	2 cut(s)	161, 184
SmiMI	CAYNNNNRTG	1 cut(s)	422
SphI	GCATGC	1 cut(s)	465
Sse9I	AATT	4 cut(s)	146, 171, 200, 346
SspMI	CTAG	3 cut(s)	446, 468, 472
StyI	CCWWGG	3 cut(s)	15, 309, 394
TaaI	ACNGT	1 cut(s)	304
TaiI	ACGT	1 cut(s)	362
TasI	AATT	4 cut(s)	146, 171, 200, 346
TfiI	GAWTC	2 cut(s)	23, 456
Tru1I	TTAA	3 cut(s)	51, 236, 345
Tru9I	TTAA	3 cut(s)	51, 236, 345
TseI	GCWGC	1 cut(s)	410
TspDTI	ATGAA	3 cut(s)	17, 23, 305
Tth111I	GACNNNGTC	1 cut(s)	304
VspI	ATTAAT	1 cut(s)	236
XapI	RAATTY	1 cut(s)	200
XceI	RCATGY	1 cut(s)	465
XmnI	GAANNNNTTC	1 cut(s)	389
XspI	CTAG	3 cut(s)	446, 468, 472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.