Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006294

Physical Location & Seq

Genomic Coordinates Reverse (-)

5982491 .. 5983510

Gene Structure 1020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0075600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGCGAGTTATATGTGGAGGAAATACGCAGACTATGTGTACACAAAATGGGAAAGAATGATTCTTTGGAACATGGTGGAGCCCTACACCAGGCCCAAATCGTTTACGCCTCTCGTCACTATCTACGTCGCCGCTTTCTACACTGGAGTCGTCGCCTCTGCCATCACTGAACAGCTCTACAAGGAAAAATACTGGGAAGATCATCCTGGCCATGCAGTCCCACTTATGAAGCCCAAGTTTTATGGAGGACCTTGGAAGGTAGAGAGAGGAGAGGTTCCGGCCGCTCTCCCACCCCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003856 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016838 GO:0019632 GO:0019752 GO:0032787 GO:0033587 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0046394 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

DHQ_synthase

Protein Analysis

99

Amino Acids

11.64

Weight (kDa)

9.1

Isoelectric Point (pI)

41.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006294)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66120 AT5G66120
fragaria_vesca	FvH4_1g11430
malus_domestica	MD15G1242600.v1.1
prunus_persica	Prupe.7G171600_v2.0.a1
pyrus_communis	pycom02g09850 pycom15g21380
rosa_chinensis	RchiOBHm_Chr2g0099011 RchiOBHm_Chr2g0099021
rosa_laevigata	RLG00000016840
rosa_multiflora	Rmu_co8359771.1_g000001 Rmu_sc0000577.1_g000012 Rmu_sc0009422.1_g000001
rosa_roxburghii	Rroxscaffold_2G00143490 Rroxscaffold_2G00143510
rosa_rugosa	Rorug02G0075600 Rorug02G0075700
rosa_samantha	Rh2AG125000 Rh2AG125100 Rh2BG128200 Rh2BG128300 Rh2CG129200 Rh2CG129300 Rh2DG129400 Rh2DG129500
rosa_wichuraiana	Rw2G009610 Rw2G009620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	284
AciI	CCGC	2 cut(s)	132, 282
AcoI	YGGCCR	2 cut(s)	208, 279
AfaI	GTAC	1 cut(s)	41
AfiI	CCNNNNNNNGG	1 cut(s)	90
AjnI	CCWGG	2 cut(s)	89, 205
AjuI	GAANNNNNNNTTGG	2 cut(s)	49, 81
AluBI	AGCT	1 cut(s)	175
AluI	AGCT	1 cut(s)	175
AoxI	GGCC	3 cut(s)	92, 208, 279
AspS9I	GGNCC	2 cut(s)	93, 248
AvaII	GGWCC	1 cut(s)	248
BalI	TGGCCA	1 cut(s)	210
BanII	GRGCYC	1 cut(s)	84
BccI	CCATC	1 cut(s)	170
BciT130I	CCWGG	2 cut(s)	91, 207
BisI	GCNGC	2 cut(s)	132, 282
BlsI	GCNGC	2 cut(s)	133, 283
Bme1390I	CCNGG	2 cut(s)	91, 207
Bme18I	GGWCC	1 cut(s)	248
BmgT120I	GGNCC	2 cut(s)	93, 248
BmiI	GGNNCC	2 cut(s)	81, 276
BmrFI	CCNGG	2 cut(s)	91, 207
BmrI	ACTGGG	1 cut(s)	202
BmuI	ACTGGG	1 cut(s)	202
BpmI	CTGGAG	1 cut(s)	165
BsaJI	CCNNGG	1 cut(s)	251
Bsc4I	CCNNNNNNNGG	1 cut(s)	90
Bse1I	ACTGG	2 cut(s)	148, 197
BseBI	CCWGG	2 cut(s)	91, 207
BseDI	CCNNGG	1 cut(s)	251
BseGI	GGATG	1 cut(s)	202
BseLI	CCNNNNNNNGG	1 cut(s)	90
BseNI	ACTGG	2 cut(s)	148, 197
BseRI	GAGGAG	1 cut(s)	282
BseX3I	CGGCCG	1 cut(s)	279
Bsh1285I	CGRYCG	1 cut(s)	282
BshFI	GGCC	3 cut(s)	94, 210, 281
BsiEI	CGRYCG	1 cut(s)	282
BsiSI	CCGG	1 cut(s)	278
BslFI	GGGAC	1 cut(s)	203
BslI	CCNNNNNNNGG	1 cut(s)	90
BsmFI	GGGAC	1 cut(s)	203
BsnI	GGCC	3 cut(s)	94, 210, 281
Bsp1286I	GDGCHC	1 cut(s)	84
Bsp1407I	TGTACA	1 cut(s)	39
Bsp143I	GATC	1 cut(s)	199
BspACI	CCGC	2 cut(s)	132, 282
BspANI	GGCC	3 cut(s)	94, 210, 281
BspLI	GGNNCC	2 cut(s)	81, 276
BsrBI	CCGCTC	1 cut(s)	284
BsrGI	TGTACA	1 cut(s)	39
BsrI	ACTGG	2 cut(s)	148, 197
BssECI	CCNNGG	1 cut(s)	251
BssMI	GATC	1 cut(s)	199
BssT1I	CCWWGG	1 cut(s)	251
Bst2UI	CCWGG	2 cut(s)	91, 207
BstAUI	TGTACA	1 cut(s)	39
BstENI	CCTNNNNNAGG	1 cut(s)	88
BstF5I	GGATG	1 cut(s)	202
BstKTI	GATC	1 cut(s)	202
BstMBI	GATC	1 cut(s)	199
BstMCI	CGRYCG	1 cut(s)	282
BstNI	CCWGG	2 cut(s)	91, 207
BstSCI	CCNGG	2 cut(s)	89, 205
BstZI	CGGCCG	1 cut(s)	279
BsuRI	GGCC	3 cut(s)	94, 210, 281
BtsCI	GGATG	1 cut(s)	202
BtsIMutI	CAGTG	2 cut(s)	141, 165
Cfr13I	GGNCC	2 cut(s)	93, 248
Csp6I	GTAC	1 cut(s)	40
CviAII	CATG	2 cut(s)	73, 212
CviJI	RGCY	6 cut(s)	82, 94, 175, 210, 232, 281
CviKI_1	RGCY	6 cut(s)	82, 94, 175, 210, 232, 281
CviQI	GTAC	1 cut(s)	40
DpnI	GATC	1 cut(s)	201
DpnII	GATC	1 cut(s)	199
EaeI	YGGCCR	2 cut(s)	208, 279
EagI	CGGCCG	1 cut(s)	279
EclXI	CGGCCG	1 cut(s)	279
Eco130I	CCWWGG	1 cut(s)	251
Eco24I	GRGCYC	1 cut(s)	84
Eco47I	GGWCC	1 cut(s)	248
Eco52I	CGGCCG	1 cut(s)	279
EcoNI	CCTNNNNNAGG	1 cut(s)	88
EcoO109I	RGGNCCY	1 cut(s)	248
EcoRII	CCWGG	2 cut(s)	89, 205
EcoT14I	CCWWGG	1 cut(s)	251
EcoT38I	GRGCYC	1 cut(s)	84
ErhI	CCWWGG	1 cut(s)	251
FaeI	CATG	2 cut(s)	76, 215
FaiI	YATR	8 cut(s)	12, 14, 36, 74, 213, 227, 243, 298
FaqI	GGGAC	1 cut(s)	203
FatI	CATG	2 cut(s)	72, 211
Fnu4HI	GCNGC	2 cut(s)	132, 282
FokI	GGATG	1 cut(s)	189
FriOI	GRGCYC	1 cut(s)	84
Fsp4HI	GCNGC	2 cut(s)	132, 282
GluI	GCNGC	2 cut(s)	132, 282
GsuI	CTGGAG	1 cut(s)	165
HaeIII	GGCC	3 cut(s)	94, 210, 281
HapII	CCGG	1 cut(s)	278
Hin1II	CATG	2 cut(s)	76, 215
HinfI	GANTC	2 cut(s)	61, 147
HpaII	CCGG	1 cut(s)	278
Hpy166II	GTNNAC	3 cut(s)	40, 42, 105
Hpy8I	GTNNAC	3 cut(s)	40, 42, 105
Hpy99I	CGWCG	2 cut(s)	131, 155
HpyAV	CCTTC	1 cut(s)	250
HpyCH4IV	ACGT	1 cut(s)	126
HpyCH4V	TGCA	1 cut(s)	215
HpySE526I	ACGT	1 cut(s)	126
Hsp92II	CATG	2 cut(s)	76, 215
Kzo9I	GATC	1 cut(s)	199
LmnI	GCTCC	1 cut(s)	79
LpnPI	CCDG	7 cut(s)	76, 103, 129, 178, 192, 219, 291
MaeII	ACGT	1 cut(s)	126
MaeIII	GTNAC	1 cut(s)	115
MalI	GATC	1 cut(s)	201
MbiI	CCGCTC	1 cut(s)	284
MboI	GATC	1 cut(s)	199
MboII	GAAGA	1 cut(s)	209
MhlI	GDGCHC	1 cut(s)	84
MlsI	TGGCCA	1 cut(s)	210
MluNI	TGGCCA	1 cut(s)	210
MlyI	GAGTC	1 cut(s)	156
MnlI	CCTC	6 cut(s)	12, 120, 166, 239, 260, 265
Mox20I	TGGCCA	1 cut(s)	210
MscI	TGGCCA	1 cut(s)	210
Msp20I	TGGCCA	1 cut(s)	210
MspI	CCGG	1 cut(s)	278
MspR9I	CCNGG	2 cut(s)	91, 207
MvaI	CCWGG	2 cut(s)	91, 207
NdeII	GATC	1 cut(s)	199
NlaIII	CATG	2 cut(s)	76, 215
NlaIV	GGNNCC	2 cut(s)	81, 276
NmuCI	GTSAC	1 cut(s)	115
PfeI	GAWTC	1 cut(s)	61
PkrI	GCNGC	2 cut(s)	133, 283
PleI	GAGTC	1 cut(s)	155
PpsI	GAGTC	1 cut(s)	155
PpuMI	RGGWCCY	1 cut(s)	248
Psp5II	RGGWCCY	1 cut(s)	248
Psp6I	CCWGG	2 cut(s)	89, 205
PspGI	CCWGG	2 cut(s)	89, 205
PspN4I	GGNNCC	2 cut(s)	81, 276
PspPI	GGNCC	2 cut(s)	93, 248
PspPPI	RGGWCCY	1 cut(s)	248
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
SatI	GCNGC	2 cut(s)	132, 282
Sau3AI	GATC	1 cut(s)	199
Sau96I	GGNCC	2 cut(s)	93, 248
SchI	GAGTC	1 cut(s)	156
ScrFI	CCNGG	2 cut(s)	91, 207
SduI	GDGCHC	1 cut(s)	84
SetI	ASST	5 cut(s)	129, 177, 253, 261, 276
SinI	GGWCC	1 cut(s)	248
SsiI	CCGC	2 cut(s)	132, 282
StyD4I	CCNGG	2 cut(s)	89, 205
StyI	CCWWGG	1 cut(s)	251
TaiI	ACGT	1 cut(s)	129
TatI	WGTACW	1 cut(s)	39
TauI	GCSGC	2 cut(s)	134, 284
TfiI	GAWTC	1 cut(s)	61
TscAI	CASTG	2 cut(s)	148, 172
TseFI	GTSAC	1 cut(s)	115
Tsp45I	GTSAC	1 cut(s)	115
TspDTI	ATGAA	1 cut(s)	242
TspRI	CASTG	2 cut(s)	148, 172
VpaK11BI	GGWCC	1 cut(s)	248
XagI	CCTNNNNNAGG	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.