Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8359771.1

Orthogroup ID

OG0006294

Physical Location & Seq

Genomic Coordinates Reverse (-)

218 .. 1076

Gene Structure 859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8359771.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 463 bp

ggatccaaatgctctcgcttatgctataaagcgctcatgtgaaaataaggctgaggttgtgtccttggatgagaaagaaggtggactgagggcaactctgaatttgggccatacatttggccatgcaatagaaacaggggttggctatgggaagtggttccatggagaagctgttgcagctggcatggtcatggctgttgatatgtcctaccgccttggttggattgatgattcactagtgaagcgagttcacaatattgtaaaacaggccaagctacctattggccctcctgagtctgtgactgtggagacgttcaaggctgtgatggcggttgataagaaggtagctgatggattgctaaggctgatccttctgaaaggtcctctgggaaattgtgttttcacaggggactatgatagaaaggccctggacgaaacactccatgcattttgcaagtcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003856 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016838 GO:0019632 GO:0019752 GO:0032787 GO:0033587 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0046394 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

DHQ_synthase

Protein Analysis

153

Amino Acids

16.6

Weight (kDa)

7.13

Isoelectric Point (pI)

34.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006294)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66120 AT5G66120
fragaria_vesca	FvH4_1g11430
malus_domestica	MD15G1242600.v1.1
prunus_persica	Prupe.7G171600_v2.0.a1
pyrus_communis	pycom02g09850 pycom15g21380
rosa_chinensis	RchiOBHm_Chr2g0099011 RchiOBHm_Chr2g0099021
rosa_laevigata	RLG00000016840
rosa_multiflora	Rmu_co8359771.1_g000001 Rmu_sc0000577.1_g000012 Rmu_sc0009422.1_g000001
rosa_roxburghii	Rroxscaffold_2G00143490 Rroxscaffold_2G00143510
rosa_rugosa	Rorug02G0075600 Rorug02G0075700
rosa_samantha	Rh2AG125000 Rh2AG125100 Rh2BG128200 Rh2BG128300 Rh2CG129200 Rh2CG129300 Rh2DG129400 Rh2DG129500
rosa_wichuraiana	Rw2G009610 Rw2G009620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	212, 330
AclWI	GGATC	2 cut(s)	10, 362
AcoI	YGGCCR	1 cut(s)	119
AcsI	RAATTY	1 cut(s)	101
AfeI	AGCGCT	1 cut(s)	33
AgsI	TTSAA	1 cut(s)	317
AhlI	ACTAGT	1 cut(s)	236
AjnI	CCWGG	1 cut(s)	427
AjuI	GAANNNNNNNTTGG	2 cut(s)	124, 156
AluBI	AGCT	4 cut(s)	171, 180, 275, 348
AluI	AGCT	4 cut(s)	171, 180, 275, 348
Alw26I	GTCTC	1 cut(s)	303
AlwI	GGATC	2 cut(s)	10, 362
Aor51HI	AGCGCT	1 cut(s)	33
AoxI	GGCC	5 cut(s)	107, 119, 268, 284, 424
ApeKI	GCWGC	1 cut(s)	177
ApoI	RAATTY	1 cut(s)	101
Asp700I	GAANNNNTTC	1 cut(s)	156
AspLEI	GCGC	1 cut(s)	34
AspS9I	GGNCC	4 cut(s)	107, 285, 381, 425
AvaII	GGWCC	1 cut(s)	381
BalI	TGGCCA	1 cut(s)	121
BamHI	GGATCC	1 cut(s)	2
BbvCI	CCTCAGC	1 cut(s)	52
BbvI	GCAGC	1 cut(s)	189
BccI	CCATC	2 cut(s)	320, 345
BciT130I	CCWGG	1 cut(s)	429
BcoDI	GTCTC	1 cut(s)	303
BcuI	ACTAGT	1 cut(s)	236
BfaI	CTAG	1 cut(s)	237
BfoI	RGCGCY	1 cut(s)	35
BisI	GCNGC	1 cut(s)	178
BlsI	GCNGC	1 cut(s)	179
Bme1390I	CCNGG	1 cut(s)	429
Bme18I	GGWCC	1 cut(s)	381
BmgT120I	GGNCC	4 cut(s)	107, 285, 381, 425
BmiI	GGNNCC	2 cut(s)	4, 159
BmrFI	CCNGG	1 cut(s)	429
BplI	GAGNNNNNCTC	2 cut(s)	80, 112
Bpu10I	CCTNAGC	2 cut(s)	52, 360
BsaJI	CCNNGG	4 cut(s)	64, 161, 215, 427
BsaXI	ACNNNNNCTCC	2 cut(s)	157, 187
BseBI	CCWGG	1 cut(s)	429
BseDI	CCNNGG	4 cut(s)	64, 161, 215, 427
BseGI	GGATG	1 cut(s)	74
BseMII	CTCAG	3 cut(s)	43, 78, 283
BseXI	GCAGC	1 cut(s)	189
BshFI	GGCC	5 cut(s)	109, 121, 270, 286, 426
BslFI	GGGAC	1 cut(s)	423
BsmAI	GTCTC	1 cut(s)	303
BsmBI	CGTCTC	1 cut(s)	303
BsmFI	GGGAC	1 cut(s)	423
BsnI	GGCC	5 cut(s)	109, 121, 270, 286, 426
Bsp143I	GATC	2 cut(s)	2, 367
Bsp19I	CCATGG	1 cut(s)	161
BspACI	CCGC	2 cut(s)	212, 330
BspANI	GGCC	5 cut(s)	109, 121, 270, 286, 426
BspCNI	CTCAG	3 cut(s)	44, 79, 284
BspLI	GGNNCC	2 cut(s)	4, 159
BspPI	GGATC	2 cut(s)	10, 362
BssECI	CCNNGG	4 cut(s)	64, 161, 215, 427
BssMI	GATC	2 cut(s)	2, 367
BssT1I	CCWWGG	3 cut(s)	64, 161, 215
Bst2UI	CCWGG	1 cut(s)	429
Bst4CI	ACNGT	1 cut(s)	305
BstC8I	GCNNGC	1 cut(s)	182
BstDEI	CTNAG	4 cut(s)	52, 87, 292, 360
BstDSI	CCRYGG	1 cut(s)	161
BstF5I	GGATG	1 cut(s)	74
BstH2I	RGCGCY	1 cut(s)	35
BstHHI	GCGC	1 cut(s)	34
BstKTI	GATC	2 cut(s)	5, 370
BstMAI	GTCTC	1 cut(s)	303
BstMBI	GATC	2 cut(s)	2, 367
BstMWI	GCNNNNNNNGC	2 cut(s)	177, 327
BstNI	CCWGG	1 cut(s)	429
BstSCI	CCNGG	1 cut(s)	427
BstV1I	GCAGC	1 cut(s)	189
BstX2I	RGATCY	1 cut(s)	2
BstXI	CCANNNNNNTGG	1 cut(s)	117
BstYI	RGATCY	1 cut(s)	2
BsuRI	GGCC	5 cut(s)	109, 121, 270, 286, 426
BtgI	CCRYGG	1 cut(s)	161
BtsCI	GGATG	1 cut(s)	74
Cac8I	GCNNGC	1 cut(s)	182
CfoI	GCGC	1 cut(s)	34
Cfr13I	GGNCC	4 cut(s)	107, 285, 381, 425
CviAII	CATG	6 cut(s)	37, 123, 162, 185, 191, 444
DdeI	CTNAG	4 cut(s)	52, 87, 292, 360
DpnI	GATC	2 cut(s)	4, 369
DpnII	GATC	2 cut(s)	2, 367
EaeI	YGGCCR	1 cut(s)	119
Eco130I	CCWWGG	3 cut(s)	64, 161, 215
Eco47I	GGWCC	1 cut(s)	381
Eco47III	AGCGCT	1 cut(s)	33
EcoO109I	RGGNCCY	2 cut(s)	381, 425
EcoRII	CCWGG	1 cut(s)	427
EcoT14I	CCWWGG	3 cut(s)	64, 161, 215
EcoT22I	ATGCAT	1 cut(s)	449
ErhI	CCWWGG	3 cut(s)	64, 161, 215
Esp3I	CGTCTC	1 cut(s)	303
FaeI	CATG	6 cut(s)	40, 126, 165, 188, 194, 447
FaqI	GGGAC	1 cut(s)	423
FatI	CATG	6 cut(s)	36, 122, 161, 184, 190, 443
Fnu4HI	GCNGC	1 cut(s)	178
FokI	GGATG	1 cut(s)	81
Fsp4HI	GCNGC	1 cut(s)	178
FspBI	CTAG	1 cut(s)	237
GlaI	GCGC	1 cut(s)	33
GluI	GCNGC	1 cut(s)	178
HaeII	RGCGCY	1 cut(s)	35
HaeIII	GGCC	5 cut(s)	109, 121, 270, 286, 426
HhaI	GCGC	1 cut(s)	34
Hin1II	CATG	6 cut(s)	40, 126, 165, 188, 194, 447
Hin6I	GCGC	1 cut(s)	32
HinP1I	GCGC	1 cut(s)	32
HinfI	GANTC	2 cut(s)	231, 294
Hpy166II	GTNNAC	2 cut(s)	84, 251
Hpy188I	TCNGA	2 cut(s)	100, 376
Hpy188III	TCNNGA	2 cut(s)	291, 460
Hpy8I	GTNNAC	2 cut(s)	84, 251
HpyAV	CCTTC	3 cut(s)	72, 335, 381
HpyCH4III	ACNGT	1 cut(s)	305
HpyCH4IV	ACGT	1 cut(s)	312
HpyCH4V	TGCA	4 cut(s)	126, 177, 447, 454
HpyF10VI	GCNNNNNNNGC	2 cut(s)	177, 327
HpyF3I	CTNAG	4 cut(s)	52, 87, 292, 360
HpySE526I	ACGT	1 cut(s)	312
Hsp92II	CATG	6 cut(s)	40, 126, 165, 188, 194, 447
HspAI	GCGC	1 cut(s)	32
Kzo9I	GATC	2 cut(s)	2, 367
LpnPI	CCDG	8 cut(s)	121, 166, 252, 304, 372, 391, 414, 441
Lsp1109I	GCAGC	1 cut(s)	189
MaeI	CTAG	1 cut(s)	237
MaeII	ACGT	1 cut(s)	312
MaeIII	GTNAC	1 cut(s)	299
MalI	GATC	2 cut(s)	4, 369
MboI	GATC	2 cut(s)	2, 367
MflI	RGATCY	1 cut(s)	2
MlsI	TGGCCA	1 cut(s)	121
MluCI	AATT	2 cut(s)	101, 392
MluNI	TGGCCA	1 cut(s)	121
MlyI	GAGTC	1 cut(s)	303
MmeI	TCCRAC	1 cut(s)	201
MnlI	CCTC	4 cut(s)	47, 82, 298, 394
Mox20I	TGGCCA	1 cut(s)	121
Mph1103I	ATGCAT	1 cut(s)	449
MroXI	GAANNNNTTC	1 cut(s)	156
MscI	TGGCCA	1 cut(s)	121
MslI	CAYNNNNRTG	1 cut(s)	189
Msp20I	TGGCCA	1 cut(s)	121
MspA1I	CMGCKG	1 cut(s)	180
MspR9I	CCNGG	1 cut(s)	429
MvaI	CCWGG	1 cut(s)	429
MwoI	GCNNNNNNNGC	2 cut(s)	177, 327
NcoI	CCATGG	1 cut(s)	161
NdeII	GATC	2 cut(s)	2, 367
NlaIII	CATG	6 cut(s)	40, 126, 165, 188, 194, 447
NlaIV	GGNNCC	2 cut(s)	4, 159
NmuCI	GTSAC	1 cut(s)	299
NsiI	ATGCAT	1 cut(s)	449
PdmI	GAANNNNTTC	1 cut(s)	156
PfeI	GAWTC	1 cut(s)	231
PkrI	GCNGC	1 cut(s)	179
PleI	GAGTC	1 cut(s)	302
PpsI	GAGTC	1 cut(s)	302
PpuMI	RGGWCCY	1 cut(s)	381
Psp5II	RGGWCCY	1 cut(s)	381
Psp6I	CCWGG	1 cut(s)	427
PspGI	CCWGG	1 cut(s)	427
PspN4I	GGNNCC	2 cut(s)	4, 159
PspPI	GGNCC	4 cut(s)	107, 285, 381, 425
PspPPI	RGGWCCY	1 cut(s)	381
PsuI	RGATCY	1 cut(s)	2
PvuII	CAGCTG	1 cut(s)	180
RseI	CAYNNNNRTG	1 cut(s)	189
SatI	GCNGC	1 cut(s)	178
Sau3AI	GATC	2 cut(s)	2, 367
Sau96I	GGNCC	4 cut(s)	107, 285, 381, 425
SchI	GAGTC	1 cut(s)	303
ScrFI	CCNGG	1 cut(s)	429
SinI	GGWCC	1 cut(s)	381
SmiMI	CAYNNNNRTG	1 cut(s)	189
SpeI	ACTAGT	1 cut(s)	236
Sse9I	AATT	2 cut(s)	101, 392
SsiI	CCGC	2 cut(s)	212, 330
SspI	AATATT	1 cut(s)	257
SspMI	CTAG	1 cut(s)	237
StyD4I	CCNGG	1 cut(s)	427
StyI	CCWWGG	3 cut(s)	64, 161, 215
TaaI	ACNGT	1 cut(s)	305
TaiI	ACGT	1 cut(s)	315
TasI	AATT	2 cut(s)	101, 392
TfiI	GAWTC	1 cut(s)	231
TseFI	GTSAC	1 cut(s)	299
TseI	GCWGC	1 cut(s)	177
Tsp45I	GTSAC	1 cut(s)	299
VpaK11BI	GGWCC	1 cut(s)	381
XapI	RAATTY	1 cut(s)	101
XmnI	GAANNNNTTC	1 cut(s)	156
XspI	CTAG	1 cut(s)	237
Zsp2I	ATGCAT	1 cut(s)	449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.