Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0006294

Physical Location & Seq

Genomic Coordinates Forward (+)

6818215 .. 6820269

Gene Structure 2055 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g09850.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGACTCATTATGAAGGAAGTTATGACGGAGTTGACAAAAAGGTTGCACATTTTGATGAGTTTAGGGACCAAAGGCATGTTCACGGAAGGAGGGTTCTTGTGGTCACTAACACCAAAGTTGCACCATTGTGCTTGGATAAAGTTGTTGAGGCTTTGACAAGAGATAACCCGAATGTGTCAATTGAGAGGGTGATTTTACCGGATGGTGAGAAGTGTAAGAACATGGGCACTCTTATGAAAGTGTTTGACAAGGCTATTGGGTCAAGAGTACTGGACCAGCGATGTACATTTGTTGCGCTCGGAGGCGGCGTGATTGGTGACATGTGTGGCTATGCTGCTGCTTCTTACCTTCGGGGTGTTAACTTCATTCAGATTCTGACAATTTTTAAGGCGCAGGTTCATTCTTCTGTTGGCGGAAAAACTGATATAAACCACTCTCTTGGGAAGAACTTAATCGGTGCTTTTTACCAACCTCAGTGTACGCTTATTGTCACAAACACATTGAACACATTACCAGATCGGGAACTGGCATCAGGGCTTGCGGAGGCCATTAAGTGTGGGCTTGTTAGAGATGCAGATTTCTTTGAATGGCAGGAGAGGAATATTCAGGCAATAATGGCAAGGGATCCAGCGGCATTGGCTTATGCTATAAAGCAGTCGTGTGAAATCAAGGCTGAGCTTGTCCTTGGACGAGAGGGAAAGTGGAGTGAGGGCTATACTGAATTTGGGTCATACATTTGGTCATGTGAGTTTTTGTTTTGTACAATTAGGTGCAATAGAAACTGGCTCCATGGAGAAGCTGTTACGGTTATGGCTGCTGACATGTCATACCGCCTTGGCTGGATTGATGATGCACTTGAGAAGCGAACCACCAACATTTTTAAGCAGTCCAAGTTACCTATTGCACCTGCTGAATCTGTGACGATCGAGATGTTCAGATCTGTAATGGCGATTGATAAGAAGGTAGCTGATGGGTTACTAAGGCTCGTCCTTCTGAAGGGTCCTTTGGGAAACTGTGTCTTCACCGGAAGGCCCTCGACGAAACACTCCATGCATTTTGTAAGTCCTGATGATCCGCACAAGATGTGTGTGAGTTCCTCACCTGCGTTTCGTGGTTTTTGTATTTTAGTCGTCCACTCGTCCGTGTACTTTGCCCCTATGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003856 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016838 GO:0019632 GO:0019752 GO:0032787 GO:0033587 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0046394 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

DHQ_synthase

Protein Analysis

389

Amino Acids

43.13

Weight (kDa)

8.35

Isoelectric Point (pI)

38.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006294)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66120 AT5G66120
fragaria_vesca	FvH4_1g11430
malus_domestica	MD15G1242600.v1.1
prunus_persica	Prupe.7G171600_v2.0.a1
pyrus_communis	pycom02g09850 pycom15g21380
rosa_chinensis	RchiOBHm_Chr2g0099011 RchiOBHm_Chr2g0099021
rosa_laevigata	RLG00000016840
rosa_multiflora	Rmu_co8359771.1_g000001 Rmu_sc0000577.1_g000012 Rmu_sc0009422.1_g000001
rosa_roxburghii	Rroxscaffold_2G00143490 Rroxscaffold_2G00143510
rosa_rugosa	Rorug02G0075600 Rorug02G0075700
rosa_samantha	Rh2AG125000 Rh2AG125100 Rh2BG128200 Rh2BG128300 Rh2CG129200 Rh2CG129300 Rh2DG129400 Rh2DG129500
rosa_wichuraiana	Rw2G009610 Rw2G009620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	916, 1111
Acc36I	ACCTGC	3 cut(s)	385, 916, 1111
AciI	CCGC	6 cut(s)	306, 414, 542, 632, 832, 1076
AclWI	GGATC	3 cut(s)	620, 633, 1067
AcsI	RAATTY	1 cut(s)	722
AcuI	CTGAAG	1 cut(s)	1016
AfaI	GTAC	5 cut(s)	270, 286, 481, 763, 1148
AfiI	CCNNNNNNNGG	1 cut(s)	997
AflIII	ACRYGT	2 cut(s)	321, 822
AgsI	TTSAA	2 cut(s)	505, 587
AjuI	GAANNNNNNNTTGG	4 cut(s)	63, 95, 989, 1021
AleI	CACNNNNGTG	1 cut(s)	127
AloI	GAACNNNNNNTCC	2 cut(s)	78, 110
AluBI	AGCT	3 cut(s)	679, 800, 968
AluI	AGCT	3 cut(s)	679, 800, 968
AlwI	GGATC	3 cut(s)	620, 633, 1067
AlwNI	CAGNNNCTG	1 cut(s)	376
AoxI	GGCC	2 cut(s)	546, 1031
ApeKI	GCWGC	3 cut(s)	335, 338, 815
ApoI	RAATTY	1 cut(s)	722
AspLEI	GCGC	2 cut(s)	298, 394
AspS9I	GGNCC	4 cut(s)	67, 274, 1001, 1032
AsuHPI	GGTGA	5 cut(s)	202, 218, 329, 1015, 1092
AvaII	GGWCC	3 cut(s)	67, 274, 1001
BaeGI	GKGCMC	1 cut(s)	230
BamHI	GGATCC	1 cut(s)	625
BbsI	GAAGAC	1 cut(s)	1012
BbvI	GCAGC	3 cut(s)	322, 325, 802
BccI	CCATC	2 cut(s)	197, 965
BfuAI	ACCTGC	3 cut(s)	385, 916, 1111
BglII	AGATCT	1 cut(s)	938
BisI	GCNGC	5 cut(s)	307, 336, 339, 633, 816
BlpI	GCTNAGC	1 cut(s)	675
BlsI	GCNGC	5 cut(s)	308, 337, 340, 634, 817
BmcAI	AGTACT	1 cut(s)	270
Bme18I	GGWCC	3 cut(s)	67, 274, 1001
BmgT120I	GGNCC	4 cut(s)	67, 274, 1001, 1032
BmiI	GGNNCC	4 cut(s)	68, 627, 788, 1002
BmsI	GCATC	3 cut(s)	539, 562, 841
BpiI	GAAGAC	1 cut(s)	1012
Bpu1102I	GCTNAGC	1 cut(s)	675
BpuEI	CTTGAG	1 cut(s)	878
BsaJI	CCNNGG	3 cut(s)	685, 790, 835
BsaWI	WCCGGW	2 cut(s)	199, 1025
BsaXI	ACNNNNNCTCC	4 cut(s)	294, 324, 786, 816
Bsc4I	CCNNNNNNNGG	1 cut(s)	997
Bse1I	ACTGG	3 cut(s)	276, 531, 788
BseDI	CCNNGG	3 cut(s)	685, 790, 835
BseGI	GGATG	1 cut(s)	208
BseLI	CCNNNNNNNGG	1 cut(s)	997
BseMII	CTCAG	2 cut(s)	488, 666
BseNI	ACTGG	3 cut(s)	276, 531, 788
BseSI	GKGCMC	1 cut(s)	230
BseXI	GCAGC	3 cut(s)	322, 325, 802
Bsh1285I	CGRYCG	1 cut(s)	927
BshFI	GGCC	2 cut(s)	548, 1033
BsiEI	CGRYCG	1 cut(s)	927
BsiSI	CCGG	2 cut(s)	200, 1026
BslFI	GGGAC	1 cut(s)	80
BslI	CCNNNNNNNGG	1 cut(s)	997
BsmFI	GGGAC	1 cut(s)	80
BsnI	GGCC	2 cut(s)	548, 1033
Bsp1286I	GDGCHC	1 cut(s)	230
Bsp1407I	TGTACA	2 cut(s)	284, 761
Bsp143I	GATC	5 cut(s)	517, 625, 924, 938, 1072
Bsp1720I	GCTNAGC	1 cut(s)	675
Bsp19I	CCATGG	1 cut(s)	790
BspACI	CCGC	6 cut(s)	306, 414, 542, 632, 832, 1076
BspANI	GGCC	2 cut(s)	548, 1033
BspCNI	CTCAG	2 cut(s)	487, 667
BspLI	GGNNCC	4 cut(s)	68, 627, 788, 1002
BspMI	ACCTGC	3 cut(s)	385, 916, 1111
BspPI	GGATC	3 cut(s)	620, 633, 1067
BsrGI	TGTACA	2 cut(s)	284, 761
BsrI	ACTGG	3 cut(s)	276, 531, 788
BssECI	CCNNGG	3 cut(s)	685, 790, 835
BssMI	GATC	5 cut(s)	517, 625, 924, 938, 1072
BssT1I	CCWWGG	3 cut(s)	685, 790, 835
Bst4CI	ACNGT	2 cut(s)	808, 1016
BstAUI	TGTACA	2 cut(s)	284, 761
BstC8I	GCNNGC	1 cut(s)	540
BstDEI	CTNAG	3 cut(s)	474, 675, 980
BstDSI	CCRYGG	1 cut(s)	790
BstENI	CCTNNNNNAGG	1 cut(s)	995
BstF5I	GGATG	1 cut(s)	208
BstHHI	GCGC	2 cut(s)	298, 394
BstKTI	GATC	5 cut(s)	520, 628, 927, 941, 1075
BstMBI	GATC	5 cut(s)	517, 625, 924, 938, 1072
BstMCI	CGRYCG	1 cut(s)	927
BstMWI	GCNNNNNNNGC	2 cut(s)	617, 638
BstNSI	RCATGY	3 cut(s)	80, 325, 826
BstSLI	GKGCMC	1 cut(s)	230
BstV1I	GCAGC	3 cut(s)	322, 325, 802
BstV2I	GAAGAC	1 cut(s)	1012
BstX2I	RGATCY	2 cut(s)	625, 938
BstXI	CCANNNNNNTGG	1 cut(s)	440
BstYI	RGATCY	2 cut(s)	625, 938
BsuRI	GGCC	2 cut(s)	548, 1033
BtgI	CCRYGG	1 cut(s)	790
BtgZI	GCGATG	1 cut(s)	295
BtsCI	GGATG	1 cut(s)	208
BtsIMutI	CAGTG	1 cut(s)	482
BveI	ACCTGC	3 cut(s)	385, 916, 1111
Cac8I	GCNNGC	1 cut(s)	540
CaiI	CAGNNNCTG	1 cut(s)	376
CfoI	GCGC	2 cut(s)	298, 394
Cfr13I	GGNCC	4 cut(s)	67, 274, 1001, 1032
Csp6I	GTAC	5 cut(s)	269, 285, 480, 762, 1147
CviAII	CATG	7 cut(s)	77, 223, 322, 744, 791, 823, 1051
CviQI	GTAC	5 cut(s)	269, 285, 480, 762, 1147
DdeI	CTNAG	3 cut(s)	474, 675, 980
DpnI	GATC	5 cut(s)	519, 627, 926, 940, 1074
DpnII	GATC	5 cut(s)	517, 625, 924, 938, 1072
EciI	GGCGGA	1 cut(s)	429
Eco130I	CCWWGG	3 cut(s)	685, 790, 835
Eco47I	GGWCC	3 cut(s)	67, 274, 1001
Eco57I	CTGAAG	1 cut(s)	1016
EcoNI	CCTNNNNNAGG	1 cut(s)	995
EcoO109I	RGGNCCY	2 cut(s)	1001, 1032
EcoT14I	CCWWGG	3 cut(s)	685, 790, 835
EcoT22I	ATGCAT	1 cut(s)	1056
ErhI	CCWWGG	3 cut(s)	685, 790, 835
FaeI	CATG	7 cut(s)	80, 226, 325, 747, 794, 826, 1054
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	7 cut(s)	76, 222, 321, 743, 790, 822, 1050
Fnu4HI	GCNGC	5 cut(s)	307, 336, 339, 633, 816
FokI	GGATG	1 cut(s)	215
Fsp4HI	GCNGC	5 cut(s)	307, 336, 339, 633, 816
GlaI	GCGC	2 cut(s)	297, 393
GluI	GCNGC	5 cut(s)	307, 336, 339, 633, 816
HaeIII	GGCC	2 cut(s)	548, 1033
HapII	CCGG	2 cut(s)	200, 1026
HhaI	GCGC	2 cut(s)	298, 394
Hin1II	CATG	7 cut(s)	80, 226, 325, 747, 794, 826, 1054
Hin6I	GCGC	2 cut(s)	296, 392
HinP1I	GCGC	2 cut(s)	296, 392
HincII	GTYRAC	2 cut(s)	34, 361
HindII	GTYRAC	2 cut(s)	34, 361
HinfI	GANTC	3 cut(s)	4, 373, 914
HpaI	GTTAAC	1 cut(s)	361
HpaII	CCGG	2 cut(s)	200, 1026
HphI	GGTGA	5 cut(s)	202, 218, 329, 1015, 1092
Hpy166II	GTNNAC	6 cut(s)	34, 82, 361, 480, 1135, 1147
Hpy188I	TCNGA	5 cut(s)	302, 372, 378, 938, 996
Hpy188III	TCNNGA	4 cut(s)	264, 521, 928, 1067
Hpy8I	GTNNAC	6 cut(s)	34, 82, 361, 480, 1135, 1147
Hpy99I	CGWCG	1 cut(s)	1042
HpyAV	CCTTC	7 cut(s)	8, 81, 359, 955, 991, 1001, 1023
HpyCH4III	ACNGT	2 cut(s)	808, 1016
HpyCH4V	TGCA	7 cut(s)	47, 122, 575, 774, 854, 905, 1054
HpyF10VI	GCNNNNNNNGC	2 cut(s)	617, 638
HpyF3I	CTNAG	3 cut(s)	474, 675, 980
Hsp92II	CATG	7 cut(s)	80, 226, 325, 747, 794, 826, 1054
HspAI	GCGC	2 cut(s)	296, 392
KspAI	GTTAAC	1 cut(s)	361
Kzo9I	GATC	5 cut(s)	517, 625, 924, 938, 1072
LmnI	GCTCC	1 cut(s)	792
Lsp1109I	GCAGC	3 cut(s)	322, 325, 802
LweI	GCATC	3 cut(s)	539, 562, 841
MaeIII	GTNAC	7 cut(s)	103, 317, 490, 802, 894, 919, 975
MalI	GATC	5 cut(s)	519, 627, 926, 940, 1074
MboI	GATC	5 cut(s)	517, 625, 924, 938, 1072
MboII	GAAGA	3 cut(s)	396, 457, 1012
MfeI	CAATTG	1 cut(s)	180
MflI	RGATCY	2 cut(s)	625, 938
MhlI	GDGCHC	1 cut(s)	230
MluCI	AATT	4 cut(s)	180, 381, 722, 765
Mph1103I	ATGCAT	1 cut(s)	1056
MseI	TTAA	5 cut(s)	360, 387, 452, 552, 882
MslI	CAYNNNNRTG	3 cut(s)	54, 127, 233
MspA1I	CMGCKG	1 cut(s)	632
MspI	CCGG	2 cut(s)	200, 1026
MunI	CAATTG	1 cut(s)	180
MwoI	GCNNNNNNNGC	2 cut(s)	617, 638
NcoI	CCATGG	1 cut(s)	790
NdeII	GATC	5 cut(s)	517, 625, 924, 938, 1072
NlaIII	CATG	7 cut(s)	80, 226, 325, 747, 794, 826, 1054
NlaIV	GGNNCC	4 cut(s)	68, 627, 788, 1002
NmuCI	GTSAC	4 cut(s)	103, 317, 490, 919
NsiI	ATGCAT	1 cut(s)	1056
NspI	RCATGY	3 cut(s)	80, 325, 826
OliI	CACNNNNGTG	1 cut(s)	127
PaqCI	CACCTGC	2 cut(s)	916, 1111
PciI	ACATGT	2 cut(s)	321, 822
PcsI	WCGNNNNNNNCGW	1 cut(s)	306
PfeI	GAWTC	2 cut(s)	373, 914
PkrI	GCNGC	5 cut(s)	308, 337, 340, 634, 817
Ple19I	CGATCG	1 cut(s)	927
PpuMI	RGGWCCY	1 cut(s)	1001
PscI	ACATGT	2 cut(s)	321, 822
Psp5II	RGGWCCY	1 cut(s)	1001
PspN4I	GGNNCC	4 cut(s)	68, 627, 788, 1002
PspPI	GGNCC	4 cut(s)	67, 274, 1001, 1032
PspPPI	RGGWCCY	1 cut(s)	1001
PstNI	CAGNNNCTG	1 cut(s)	376
PsuI	RGATCY	2 cut(s)	625, 938
PvuI	CGATCG	1 cut(s)	927
RsaI	GTAC	5 cut(s)	270, 286, 481, 763, 1148
RsaNI	GTAC	5 cut(s)	269, 285, 480, 762, 1147
RseI	CAYNNNNRTG	3 cut(s)	54, 127, 233
SaqAI	TTAA	5 cut(s)	360, 387, 452, 552, 882
SatI	GCNGC	5 cut(s)	307, 336, 339, 633, 816
Sau3AI	GATC	5 cut(s)	517, 625, 924, 938, 1072
Sau96I	GGNCC	4 cut(s)	67, 274, 1001, 1032
ScaI	AGTACT	1 cut(s)	270
SduI	GDGCHC	1 cut(s)	230
SfaNI	GCATC	3 cut(s)	539, 562, 841
SinI	GGWCC	3 cut(s)	67, 274, 1001
SmiMI	CAYNNNNRTG	3 cut(s)	54, 127, 233
SmlI	CTYRAG	1 cut(s)	857
SmoI	CTYRAG	1 cut(s)	857
Sse9I	AATT	4 cut(s)	180, 381, 722, 765
SsiI	CCGC	6 cut(s)	306, 414, 542, 632, 832, 1076
SspI	AATATT	1 cut(s)	604
StyI	CCWWGG	3 cut(s)	685, 790, 835
TaaI	ACNGT	2 cut(s)	808, 1016
TaqI	TCGA	2 cut(s)	927, 1037
TasI	AATT	4 cut(s)	180, 381, 722, 765
TatI	WGTACW	4 cut(s)	268, 284, 761, 1146
TauI	GCSGC	2 cut(s)	309, 635
TfiI	GAWTC	2 cut(s)	373, 914
Tru1I	TTAA	5 cut(s)	360, 387, 452, 552, 882
Tru9I	TTAA	5 cut(s)	360, 387, 452, 552, 882
TscAI	CASTG	1 cut(s)	482
TseFI	GTSAC	4 cut(s)	103, 317, 490, 919
TseI	GCWGC	3 cut(s)	335, 338, 815
Tsp45I	GTSAC	4 cut(s)	103, 317, 490, 919
TspDTI	ATGAA	4 cut(s)	27, 251, 355, 389
TspGWI	ACGGA	3 cut(s)	42, 99, 1132
TspRI	CASTG	1 cut(s)	482
VpaK11BI	GGWCC	3 cut(s)	67, 274, 1001
XagI	CCTNNNNNAGG	1 cut(s)	995
XapI	RAATTY	1 cut(s)	722
XceI	RCATGY	3 cut(s)	80, 325, 826
ZrmI	AGTACT	1 cut(s)	270
Zsp2I	ATGCAT	1 cut(s)	1056

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.