Rh2AG125100

3-dehydroquinate synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0006294
Physical Location & Seq
Reverse (-)
11363353 .. 11366770
3418 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG125100.1

Sequence Viewer

Length: 1008 bp
ATGGCCTCCACCGCCAACCCCTTCTCCATCTCCCTCTCCTCCAAGCCCACCGCCAAACCCTCACTCTTCAACCCCTCGGAGCTCTCTCTTCGGGTCCAGACCCCCGGCGTCGCGGCTCTCCGGTCTTCCTTCGCTTCCAATTGCTCCGTTAAGCTTAGCCTAGCGAAATCGAAGTCGAAGATAATGGCGAATTCGGCGCAGCTGGTGGATCAACCGCCGAGTAAAACGGCTCCGGTCGTTGTGGATGTGGATTTGGGCAATCGGAGCTACCCGATTTACATTGGATCCGGACTTCTTGACCAACCCGAGCTTCTCCAAAGGCATGTTCATGGAAAGAGAGTGCTGGTGGTGACTAACACCACGGTTGCGCCATTGTATTTGGACAAAGTTGTTGATGCTTTGACGAAAGATAACCCCAATGTTACAGTTGAGAGTGTGATTTTACCGGATGGGGAGAAGTACAAGGACATGGATACTCTTATGAAAGTGTTTGACAAGGCCATTGAGTCAAGACTGGACCGGCGATGTACATTTGTTGCCCTTGGAGGTGGTGTGGTTGGTGACATGTGTGGCTACGCTGCTGCTTCTTTCCTTCGCGGTGTTAATTTCATTCAGATTCCGACAACTGTTATGGCACAGGTTGATTCTTCTGTTGGGGGAAAAACTGGGATCAACCACCCTCTAGGGAAGAACTTGATTGGTGCTTTTTACCAGCCCCAGTGTGTGCTTATCGACACGGACACACTAAATACGTTACCAGATAGGGAACTGGCATCAGGGCTTGCTGAAGTCATTAAGTACGGACTTATTAGAGATGCAGAATTCTTTGAGTGGCAGGAGAGGAATATGGACGCATTAATAGCAAGGGATGCAAGTGCTCTCGCTTATGCTATAAAGCGCTCATGTGAAAATAAGGCTGAGGTTGTGTCCTTGGATGAGAAAGAAGGTGGACTGAGGGCAACTCTGAATTTGGGCCATACATTTGGCCATGTGAGTTTTGTTTTGTAG

Protein Analysis

335

Amino Acids

36.12

Weight (kDa)

6.96

Isoelectric Point (pI)

32.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fe-ADH PF00465 92 - 210 2.1e-06 Iron-containing alcohol dehydrogenase
Fe-ADH_2 PF13685 96 - 251 1.6e-09 Iron-containing alcohol dehydrogenase
DHQ_synthase PF01761 146 - 258 1.1e-48 3-dehydroquinate synthase N-terminal
DHQS_C PF24621 260 - 331 1.1e-26 3-dehydroquinate synthase C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 113, 597
AccIII TCCGGA 1 cut(s) 287
AciI CCGC 5 cut(s) 12, 51, 113, 215, 597
AclWI GGATC 4 cut(s) 216, 279, 292, 677
AcoI YGGCCR 1 cut(s) 985
AcsI RAATTY 3 cut(s) 190, 821, 967
AcuI CTGAAG 1 cut(s) 807
AcyI GRCGYC 1 cut(s) 108
AfaI GTAC 3 cut(s) 461, 529, 800
AfeI AGCGCT 1 cut(s) 899
AflIII ACRYGT 1 cut(s) 564
AgsI TTSAA 1 cut(s) 70
AjuI GAANNNNNNNTTGG 4 cut(s) 294, 309, 326, 341
AluBI AGCT 5 cut(s) 82, 154, 202, 267, 310
AluI AGCT 5 cut(s) 82, 154, 202, 267, 310
Alw21I GWGCWC 2 cut(s) 84, 880
AlwI GGATC 4 cut(s) 216, 279, 292, 677
Ama87I CYCGRG 1 cut(s) 305
Aor13HI TCCGGA 1 cut(s) 287
Aor51HI AGCGCT 1 cut(s) 899
AoxI GGCC 4 cut(s) 3, 498, 973, 985
ApeKI GCWGC 3 cut(s) 199, 578, 581
ApoI RAATTY 3 cut(s) 190, 821, 967
ArsI GACNNNNNNTTYG 2 cut(s) 158, 190
AseI ATTAAT 1 cut(s) 857
AspLEI GCGC 3 cut(s) 199, 370, 900
AspS9I GGNCC 3 cut(s) 94, 517, 973
AsuC2I CCSGG 1 cut(s) 105
AsuHPI GGTGA 2 cut(s) 361, 572
AvaI CYCGRG 1 cut(s) 305
AvaII GGWCC 2 cut(s) 94, 517
BalI TGGCCA 1 cut(s) 987
BamHI GGATCC 1 cut(s) 284
BanII GRGCYC 1 cut(s) 84
BbsI GAAGAC 1 cut(s) 117
Bbv12I GWGCWC 2 cut(s) 84, 880
BbvCI CCTCAGC 1 cut(s) 918
BbvI GCAGC 3 cut(s) 211, 565, 568
BccI CCATC 2 cut(s) 35, 443
BceAI ACGGC 1 cut(s) 243
BciVI GTATCC 1 cut(s) 466
BcnI CCSGG 1 cut(s) 105
BfaI CTAG 2 cut(s) 161, 683
BfoI RGCGCY 1 cut(s) 901
BfuI GTATCC 1 cut(s) 466
BisI GCNGC 4 cut(s) 114, 200, 579, 582
BlpI GCTNAGC 1 cut(s) 155
BlsI GCNGC 4 cut(s) 115, 201, 580, 583
Bme1390I CCNGG 1 cut(s) 105
Bme18I GGWCC 2 cut(s) 94, 517
BmeT110I CYCGRG 1 cut(s) 305
BmgT120I GGNCC 3 cut(s) 94, 517, 973
BmiI GGNNCC 3 cut(s) 95, 231, 286
BmrFI CCNGG 1 cut(s) 105
BmrI ACTGGG 2 cut(s) 675, 712
BmsI GCATC 4 cut(s) 385, 782, 805, 859
BmuI ACTGGG 2 cut(s) 675, 712
BpiI GAAGAC 1 cut(s) 117
BplI GAGNNNNNCTC 2 cut(s) 946, 978
Bpu10I CCTNAGC 1 cut(s) 918
Bpu1102I GCTNAGC 1 cut(s) 155
BpuMI CCSGG 1 cut(s) 105
BsaHI GRCGYC 1 cut(s) 108
BsaJI CCNNGG 5 cut(s) 75, 103, 360, 541, 930
BsaWI WCCGGW 4 cut(s) 120, 232, 287, 445
BsaXI ACNNNNNCTCC 4 cut(s) 8, 38, 537, 567
Bse118I RCCGGY 1 cut(s) 519
Bse1I ACTGG 4 cut(s) 519, 670, 718, 774
BseAI TCCGGA 1 cut(s) 287
BseDI CCNNGG 5 cut(s) 75, 103, 360, 541, 930
BseGI GGATG 4 cut(s) 250, 454, 874, 940
BseMII CTCAG 2 cut(s) 909, 944
BseNI ACTGG 4 cut(s) 519, 670, 718, 774
BseRI GAGGAG 1 cut(s) 28
BseXI GCAGC 3 cut(s) 211, 565, 568
Bsh1236I CGCG 2 cut(s) 113, 597
Bsh1285I CGRYCG 1 cut(s) 237
BshFI GGCC 4 cut(s) 5, 500, 975, 987
BsiEI CGRYCG 1 cut(s) 237
BsiHKAI GWGCWC 2 cut(s) 84, 880
BsiHKCI CYCGRG 1 cut(s) 305
BsiSI CCGG 6 cut(s) 105, 121, 233, 288, 446, 520
BsnI GGCC 4 cut(s) 5, 500, 975, 987
BsoBI CYCGRG 1 cut(s) 305
Bsp1286I GDGCHC 2 cut(s) 84, 880
Bsp13I TCCGGA 1 cut(s) 287
Bsp1407I TGTACA 1 cut(s) 527
Bsp143I GATC 3 cut(s) 208, 284, 669
Bsp1720I GCTNAGC 1 cut(s) 155
BspACI CCGC 5 cut(s) 12, 51, 113, 215, 597
BspANI GGCC 4 cut(s) 5, 500, 975, 987
BspCNI CTCAG 2 cut(s) 910, 945
BspEI TCCGGA 1 cut(s) 287
BspFNI CGCG 2 cut(s) 113, 597
BspLI GGNNCC 3 cut(s) 95, 231, 286
BspPI GGATC 4 cut(s) 216, 279, 292, 677
BsrFI RCCGGY 1 cut(s) 519
BsrGI TGTACA 1 cut(s) 527
BsrI ACTGG 4 cut(s) 519, 670, 718, 774
BssAI RCCGGY 1 cut(s) 519
BssECI CCNNGG 5 cut(s) 75, 103, 360, 541, 930
BssMI GATC 3 cut(s) 208, 284, 669
BssNI GRCGYC 1 cut(s) 108
BssT1I CCWWGG 2 cut(s) 541, 930
Bst4CI ACNGT 3 cut(s) 364, 427, 628
Bst6I CTCTTC 2 cut(s) 71, 93
BstACI GRCGYC 1 cut(s) 108
BstAPI GCANNNNNTGC 1 cut(s) 869
BstAUI TGTACA 1 cut(s) 527
BstC8I GCNNGC 1 cut(s) 783
BstDEI CTNAG 3 cut(s) 155, 918, 953
BstDSI CCRYGG 1 cut(s) 360
BstF5I GGATG 4 cut(s) 250, 454, 874, 940
BstFNI CGCG 2 cut(s) 113, 597
BstH2I RGCGCY 1 cut(s) 901
BstHHI GCGC 3 cut(s) 199, 370, 900
BstKTI GATC 3 cut(s) 211, 287, 672
BstMBI GATC 3 cut(s) 208, 284, 669
BstMCI CGRYCG 1 cut(s) 237
BstMWI GCNNNNNNNGC 5 cut(s) 11, 194, 264, 860, 869
BstNSI RCATGY 2 cut(s) 326, 568
BstSCI CCNGG 1 cut(s) 103
BstUI CGCG 2 cut(s) 113, 597
BstV1I GCAGC 3 cut(s) 211, 565, 568
BstV2I GAAGAC 1 cut(s) 117
BstX2I RGATCY 1 cut(s) 284
BstXI CCANNNNNNTGG 1 cut(s) 983
BstYI RGATCY 1 cut(s) 284
BsuI GTATCC 1 cut(s) 466
BsuRI GGCC 4 cut(s) 5, 500, 975, 987
BtgI CCRYGG 1 cut(s) 360
BtgZI GCGATG 1 cut(s) 538
BtsCI GGATG 4 cut(s) 250, 454, 874, 940
BtsIMutI CAGTG 1 cut(s) 725
Cac8I GCNNGC 1 cut(s) 783
CfoI GCGC 3 cut(s) 199, 370, 900
Cfr10I RCCGGY 1 cut(s) 519
Cfr13I GGNCC 3 cut(s) 94, 517, 973
CseI GACGC 2 cut(s) 97, 860
Csp6I GTAC 3 cut(s) 460, 528, 799
CviAII CATG 6 cut(s) 323, 329, 469, 565, 903, 989
CviQI GTAC 3 cut(s) 460, 528, 799
DdeI CTNAG 3 cut(s) 155, 918, 953
DpnI GATC 3 cut(s) 210, 286, 671
DpnII GATC 3 cut(s) 208, 284, 669
EaeI YGGCCR 1 cut(s) 985
Eam1104I CTCTTC 2 cut(s) 71, 93
EarI CTCTTC 2 cut(s) 71, 93
Ecl136II GAGCTC 1 cut(s) 82
Eco130I CCWWGG 2 cut(s) 541, 930
Eco24I GRGCYC 1 cut(s) 84
Eco47I GGWCC 2 cut(s) 94, 517
Eco47III AGCGCT 1 cut(s) 899
Eco53kI GAGCTC 1 cut(s) 82
Eco57I CTGAAG 1 cut(s) 807
Eco88I CYCGRG 1 cut(s) 305
EcoICRI GAGCTC 1 cut(s) 82
EcoRI GAATTC 2 cut(s) 190, 821
EcoT14I CCWWGG 2 cut(s) 541, 930
EcoT38I GRGCYC 1 cut(s) 84
ErhI CCWWGG 2 cut(s) 541, 930
FaeI CATG 6 cut(s) 326, 332, 472, 568, 906, 992
FatI CATG 6 cut(s) 322, 328, 468, 564, 902, 988
Fnu4HI GCNGC 4 cut(s) 114, 200, 579, 582
FokI GGATG 4 cut(s) 257, 461, 881, 947
FriOI GRGCYC 1 cut(s) 84
Fsp4HI GCNGC 4 cut(s) 114, 200, 579, 582
FspBI CTAG 2 cut(s) 161, 683
GlaI GCGC 3 cut(s) 198, 369, 899
GluI GCNGC 4 cut(s) 114, 200, 579, 582
HaeII RGCGCY 1 cut(s) 901
HaeIII GGCC 4 cut(s) 5, 500, 975, 987
HapII CCGG 6 cut(s) 105, 121, 233, 288, 446, 520
HgaI GACGC 2 cut(s) 97, 860
HhaI GCGC 3 cut(s) 199, 370, 900
Hin1I GRCGYC 1 cut(s) 108
Hin1II CATG 6 cut(s) 326, 332, 472, 568, 906, 992
Hin6I GCGC 3 cut(s) 197, 368, 898
HinP1I GCGC 3 cut(s) 197, 368, 898
HindIII AAGCTT 1 cut(s) 152
HinfI GANTC 3 cut(s) 506, 616, 644
HpaII CCGG 6 cut(s) 105, 121, 233, 288, 446, 520
HphI GGTGA 2 cut(s) 361, 572
Hpy166II GTNNAC 1 cut(s) 950
Hpy188I TCNGA 5 cut(s) 79, 264, 615, 621, 966
Hpy188III TCNNGA 4 cut(s) 97, 288, 296, 510
Hpy8I GTNNAC 1 cut(s) 950
Hpy99I CGWCG 1 cut(s) 113
HpyAV CCTTC 4 cut(s) 31, 139, 602, 938
HpyCH4III ACNGT 3 cut(s) 364, 427, 628
HpyCH4IV ACGT 1 cut(s) 752
HpyCH4V TGCA 2 cut(s) 818, 872
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 194, 264, 860, 869
HpyF3I CTNAG 3 cut(s) 155, 918, 953
HpySE526I ACGT 1 cut(s) 752
Hsp92I GRCGYC 1 cut(s) 108
Hsp92II CATG 6 cut(s) 326, 332, 472, 568, 906, 992
HspAI GCGC 3 cut(s) 197, 368, 898
Kpn2I TCCGGA 1 cut(s) 287
Kzo9I GATC 3 cut(s) 208, 284, 669
LmnI GCTCC 4 cut(s) 79, 149, 235, 264
Lsp1109I GCAGC 3 cut(s) 211, 565, 568
LweI GCATC 4 cut(s) 385, 782, 805, 859
MaeI CTAG 2 cut(s) 161, 683
MaeII ACGT 1 cut(s) 752
MaeIII GTNAC 4 cut(s) 349, 421, 560, 753
MalI GATC 3 cut(s) 210, 286, 671
MboI GATC 3 cut(s) 208, 284, 669
MboII GAAGA 6 cut(s) 58, 80, 117, 190, 639, 700
MfeI CAATTG 1 cut(s) 139
MflI RGATCY 1 cut(s) 284
MhlI GDGCHC 2 cut(s) 84, 880
MlsI TGGCCA 1 cut(s) 987
MluCI AATT 5 cut(s) 139, 190, 604, 821, 967
MluNI TGGCCA 1 cut(s) 987
MlyI GAGTC 1 cut(s) 515
MmeI TCCRAC 1 cut(s) 644
Mox20I TGGCCA 1 cut(s) 987
MroI TCCGGA 1 cut(s) 287
MscI TGGCCA 1 cut(s) 987
MseI TTAA 4 cut(s) 150, 603, 795, 857
MslI CAYNNNNRTG 1 cut(s) 327
Msp20I TGGCCA 1 cut(s) 987
MspA1I CMGCKG 1 cut(s) 202
MspI CCGG 6 cut(s) 105, 121, 233, 288, 446, 520
MspR9I CCNGG 1 cut(s) 105
MunI CAATTG 1 cut(s) 139
MvnI CGCG 2 cut(s) 113, 597
MwoI GCNNNNNNNGC 5 cut(s) 11, 194, 264, 860, 869
NciI CCSGG 1 cut(s) 105
NdeII GATC 3 cut(s) 208, 284, 669
NlaIII CATG 6 cut(s) 326, 332, 472, 568, 906, 992
NlaIV GGNNCC 3 cut(s) 95, 231, 286
NmeAIII GCCGAG 1 cut(s) 243
NmuCI GTSAC 2 cut(s) 349, 560
NspI RCATGY 2 cut(s) 326, 568
PciI ACATGT 1 cut(s) 564
PfeI GAWTC 2 cut(s) 616, 644
PkrI GCNGC 4 cut(s) 115, 201, 580, 583
PleI GAGTC 1 cut(s) 514
PpsI GAGTC 1 cut(s) 514
PscI ACATGT 1 cut(s) 564
PshBI ATTAAT 1 cut(s) 857
Psp124BI GAGCTC 1 cut(s) 84
PspN4I GGNNCC 3 cut(s) 95, 231, 286
PspPI GGNCC 3 cut(s) 94, 517, 973
PsuI RGATCY 1 cut(s) 284
PvuII CAGCTG 1 cut(s) 202
RsaI GTAC 3 cut(s) 461, 529, 800
RsaNI GTAC 3 cut(s) 460, 528, 799
RseI CAYNNNNRTG 1 cut(s) 327
SacI GAGCTC 1 cut(s) 84
SaqAI TTAA 4 cut(s) 150, 603, 795, 857
SatI GCNGC 4 cut(s) 114, 200, 579, 582
Sau3AI GATC 3 cut(s) 208, 284, 669
Sau96I GGNCC 3 cut(s) 94, 517, 973
SchI GAGTC 1 cut(s) 515
ScrFI CCNGG 1 cut(s) 105
SduI GDGCHC 2 cut(s) 84, 880
SfaNI GCATC 4 cut(s) 385, 782, 805, 859
SinI GGWCC 2 cut(s) 94, 517
SmiMI CAYNNNNRTG 1 cut(s) 327
Sse9I AATT 5 cut(s) 139, 190, 604, 821, 967
SsiI CCGC 5 cut(s) 12, 51, 113, 215, 597
SspMI CTAG 2 cut(s) 161, 683
SstI GAGCTC 1 cut(s) 84
StyD4I CCNGG 1 cut(s) 103
StyI CCWWGG 2 cut(s) 541, 930
TaaI ACNGT 3 cut(s) 364, 427, 628
TaiI ACGT 1 cut(s) 755
TaqI TCGA 3 cut(s) 170, 176, 732
TasI AATT 5 cut(s) 139, 190, 604, 821, 967
TatI WGTACW 2 cut(s) 459, 527
TauI GCSGC 1 cut(s) 116
TfiI GAWTC 2 cut(s) 616, 644
Tru1I TTAA 4 cut(s) 150, 603, 795, 857
Tru9I TTAA 4 cut(s) 150, 603, 795, 857
TscAI CASTG 1 cut(s) 725
TseFI GTSAC 2 cut(s) 349, 560
TseI GCWGC 3 cut(s) 199, 578, 581
Tsp45I GTSAC 2 cut(s) 349, 560
TspDTI ATGAA 3 cut(s) 317, 497, 598
TspGWI ACGGA 3 cut(s) 136, 752, 816
TspRI CASTG 1 cut(s) 725
VpaK11BI GGWCC 2 cut(s) 94, 517
VspI ATTAAT 1 cut(s) 857
XapI RAATTY 3 cut(s) 190, 821, 967
XceI RCATGY 2 cut(s) 326, 568
XspI CTAG 2 cut(s) 161, 683
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.