Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0006294

Physical Location & Seq

Genomic Coordinates Reverse (-)

9795327 .. 9796953

Gene Structure 1627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G009610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGAAAGTGTTTGACAAGGCTATTGAGTCGAGACTTGACCGGCGATGTACATTTGTTACCCTTGGAGGTGGTGTGATTGGTGACATGTGTGACTTTGCCGCTGCTTCTTTCCTTCGCGGTGTTAATTTCATTCAGATTCCGACGACTGTTATGGCACAGGAGAGGAATATGGATGCATTAATATCAAGGGATCCAAATGCTCTGGCTTATGCTATAAAGCGCTCATGTGAAATGAAGGCTGAGACTGTATCCTTGGATGCGCTGGAAGGTGGACTGAGGGCCATCCTTAATTTTGGTCATACGTTTGGCCATGCAATAGAAACCGCGGTTGGCTATGGGAAGTGGTTCCATGGAGAAGCTGTTGCAGCTGGCATGGTTATGGGTGTTAATATGTCCTACCGCCTTGGTTGGATTGATGAGTCACTTGTCAAGCGAGTTGACAACATTGTGGAACAAGCCAACTTACCTATTGGCCCTCCTGAATCCATGACTCTTGAGACGTTCAGGCTCGTCCTTCTGAAGGGTCCTTTGGGCAACTGTGTTTTCACTGGTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003856 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016838 GO:0019632 GO:0019752 GO:0032787 GO:0033587 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0046394 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

DHQ_synthase

Protein Analysis

185

Amino Acids

20.15

Weight (kDa)

5.64

Isoelectric Point (pI)

41.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHQ_synthase	PF01761	2 - 53	1.4e-16	3-dehydroquinate synthase N-terminal
DHQS_C	PF24621	52 - 166	1.4e-36	3-dehydroquinate synthase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006294)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66120 AT5G66120
fragaria_vesca	FvH4_1g11430
malus_domestica	MD15G1242600.v1.1
prunus_persica	Prupe.7G171600_v2.0.a1
pyrus_communis	pycom02g09850 pycom15g21380
rosa_chinensis	RchiOBHm_Chr2g0099011 RchiOBHm_Chr2g0099021
rosa_laevigata	RLG00000016840
rosa_multiflora	Rmu_co8359771.1_g000001 Rmu_sc0000577.1_g000012 Rmu_sc0009422.1_g000001
rosa_roxburghii	Rroxscaffold_2G00143490 Rroxscaffold_2G00143510
rosa_rugosa	Rorug02G0075600 Rorug02G0075700
rosa_samantha	Rh2AG125000 Rh2AG125100 Rh2BG128200 Rh2BG128300 Rh2CG129200 Rh2CG129300 Rh2DG129400 Rh2DG129500
rosa_wichuraiana	Rw2G009610 Rw2G009620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	117, 326
AciI	CCGC	5 cut(s)	99, 117, 324, 326, 400
AclWI	GGATC	2 cut(s)	185, 198
AcoI	YGGCCR	1 cut(s)	307
AcuI	CTGAAG	1 cut(s)	539
AfaI	GTAC	1 cut(s)	49
AfeI	AGCGCT	1 cut(s)	221
AfiI	CCNNNNNNNGG	1 cut(s)	520
AflIII	ACRYGT	1 cut(s)	84
AjuI	GAANNNNNNNTTGG	4 cut(s)	312, 344, 512, 544
AluBI	AGCT	2 cut(s)	359, 368
AluI	AGCT	2 cut(s)	359, 368
Alw26I	GTCTC	3 cut(s)	25, 236, 491
AlwI	GGATC	2 cut(s)	185, 198
Aor51HI	AGCGCT	1 cut(s)	221
AoxI	GGCC	3 cut(s)	279, 307, 472
ApeKI	GCWGC	2 cut(s)	101, 365
AseI	ATTAAT	1 cut(s)	179
Asp700I	GAANNNNTTC	1 cut(s)	344
AspLEI	GCGC	2 cut(s)	222, 262
AspS9I	GGNCC	3 cut(s)	279, 473, 524
AsuHPI	GGTGA	1 cut(s)	92
AvaII	GGWCC	1 cut(s)	524
BalI	TGGCCA	1 cut(s)	309
BamHI	GGATCC	1 cut(s)	190
BbvI	GCAGC	2 cut(s)	88, 377
BccI	CCATC	1 cut(s)	290
BciVI	GTATCC	1 cut(s)	259
BcoDI	GTCTC	3 cut(s)	25, 236, 491
BfaI	CTAG	1 cut(s)	556
BfoI	RGCGCY	1 cut(s)	223
BfuI	GTATCC	1 cut(s)	259
BisI	GCNGC	3 cut(s)	99, 102, 366
BlsI	GCNGC	3 cut(s)	100, 103, 367
Bme18I	GGWCC	1 cut(s)	524
BmgT120I	GGNCC	3 cut(s)	279, 473, 524
BmiI	GGNNCC	3 cut(s)	192, 347, 525
BmsI	GCATC	2 cut(s)	163, 247
BpuEI	CTTGAG	1 cut(s)	515
BsaJI	CCNNGG	5 cut(s)	61, 252, 324, 349, 403
BsaXI	ACNNNNNCTCC	4 cut(s)	57, 87, 345, 375
Bsc4I	CCNNNNNNNGG	1 cut(s)	520
Bse118I	RCCGGY	1 cut(s)	39
Bse1I	ACTGG	1 cut(s)	553
BseDI	CCNNGG	5 cut(s)	61, 252, 324, 349, 403
BseGI	GGATG	3 cut(s)	178, 262, 282
BseLI	CCNNNNNNNGG	1 cut(s)	520
BseMII	CTCAG	2 cut(s)	231, 266
BseNI	ACTGG	1 cut(s)	553
BseXI	GCAGC	2 cut(s)	88, 377
Bsh1236I	CGCG	2 cut(s)	117, 326
BshFI	GGCC	3 cut(s)	281, 309, 474
BsiSI	CCGG	1 cut(s)	40
BslI	CCNNNNNNNGG	1 cut(s)	520
BsmAI	GTCTC	3 cut(s)	25, 236, 491
BsmBI	CGTCTC	1 cut(s)	491
BsnI	GGCC	3 cut(s)	281, 309, 474
Bsp1407I	TGTACA	1 cut(s)	47
Bsp143I	GATC	1 cut(s)	190
Bsp19I	CCATGG	1 cut(s)	349
BspACI	CCGC	5 cut(s)	99, 117, 324, 326, 400
BspANI	GGCC	3 cut(s)	281, 309, 474
BspCNI	CTCAG	2 cut(s)	232, 267
BspFNI	CGCG	2 cut(s)	117, 326
BspLI	GGNNCC	3 cut(s)	192, 347, 525
BspPI	GGATC	2 cut(s)	185, 198
BsrFI	RCCGGY	1 cut(s)	39
BsrGI	TGTACA	1 cut(s)	47
BsrI	ACTGG	1 cut(s)	553
BssAI	RCCGGY	1 cut(s)	39
BssECI	CCNNGG	5 cut(s)	61, 252, 324, 349, 403
BssMI	GATC	1 cut(s)	190
BssT1I	CCWWGG	4 cut(s)	61, 252, 349, 403
Bst4CI	ACNGT	3 cut(s)	148, 247, 539
BstAUI	TGTACA	1 cut(s)	47
BstC8I	GCNNGC	1 cut(s)	370
BstDEI	CTNAG	2 cut(s)	240, 275
BstDSI	CCRYGG	2 cut(s)	324, 349
BstENI	CCTNNNNNAGG	1 cut(s)	518
BstF5I	GGATG	3 cut(s)	178, 262, 282
BstFNI	CGCG	2 cut(s)	117, 326
BstH2I	RGCGCY	1 cut(s)	223
BstHHI	GCGC	2 cut(s)	222, 262
BstKTI	GATC	1 cut(s)	193
BstMAI	GTCTC	3 cut(s)	25, 236, 491
BstMBI	GATC	1 cut(s)	190
BstMWI	GCNNNNNNNGC	1 cut(s)	365
BstNSI	RCATGY	1 cut(s)	88
BstUI	CGCG	2 cut(s)	117, 326
BstV1I	GCAGC	2 cut(s)	88, 377
BstX2I	RGATCY	1 cut(s)	190
BstYI	RGATCY	1 cut(s)	190
BsuI	GTATCC	1 cut(s)	259
BsuRI	GGCC	3 cut(s)	281, 309, 474
BtgI	CCRYGG	2 cut(s)	324, 349
BtgZI	GCGATG	1 cut(s)	58
BtsCI	GGATG	3 cut(s)	178, 262, 282
BtsIMutI	CAGTG	1 cut(s)	546
Cac8I	GCNNGC	1 cut(s)	370
CfoI	GCGC	2 cut(s)	222, 262
Cfr10I	RCCGGY	1 cut(s)	39
Cfr13I	GGNCC	3 cut(s)	279, 473, 524
Cfr42I	CCGCGG	1 cut(s)	327
Csp6I	GTAC	1 cut(s)	48
CviAII	CATG	6 cut(s)	85, 225, 311, 350, 373, 487
CviQI	GTAC	1 cut(s)	48
DdeI	CTNAG	2 cut(s)	240, 275
DpnI	GATC	1 cut(s)	192
DpnII	GATC	1 cut(s)	190
EaeI	YGGCCR	1 cut(s)	307
Eco130I	CCWWGG	4 cut(s)	61, 252, 349, 403
Eco47I	GGWCC	1 cut(s)	524
Eco47III	AGCGCT	1 cut(s)	221
Eco57I	CTGAAG	1 cut(s)	539
EcoNI	CCTNNNNNAGG	1 cut(s)	518
EcoO109I	RGGNCCY	1 cut(s)	524
EcoT14I	CCWWGG	4 cut(s)	61, 252, 349, 403
EcoT22I	ATGCAT	1 cut(s)	178
ErhI	CCWWGG	4 cut(s)	61, 252, 349, 403
Esp3I	CGTCTC	1 cut(s)	491
FaeI	CATG	6 cut(s)	88, 228, 314, 353, 376, 490
FatI	CATG	6 cut(s)	84, 224, 310, 349, 372, 486
Fnu4HI	GCNGC	3 cut(s)	99, 102, 366
FokI	GGATG	3 cut(s)	185, 269, 269
Fsp4HI	GCNGC	3 cut(s)	99, 102, 366
FspBI	CTAG	1 cut(s)	556
GlaI	GCGC	2 cut(s)	221, 261
GluI	GCNGC	3 cut(s)	99, 102, 366
HaeII	RGCGCY	1 cut(s)	223
HaeIII	GGCC	3 cut(s)	281, 309, 474
HapII	CCGG	1 cut(s)	40
HhaI	GCGC	2 cut(s)	222, 262
Hin1II	CATG	6 cut(s)	88, 228, 314, 353, 376, 490
Hin6I	GCGC	2 cut(s)	220, 260
HinP1I	GCGC	2 cut(s)	220, 260
HincII	GTYRAC	1 cut(s)	439
HindII	GTYRAC	1 cut(s)	439
HinfI	GANTC	5 cut(s)	26, 136, 419, 482, 490
HpaII	CCGG	1 cut(s)	40
HphI	GGTGA	1 cut(s)	92
Hpy166II	GTNNAC	2 cut(s)	272, 439
Hpy188I	TCNGA	3 cut(s)	135, 141, 519
Hpy188III	TCNNGA	3 cut(s)	30, 479, 494
Hpy8I	GTNNAC	2 cut(s)	272, 439
Hpy99I	CGWCG	1 cut(s)	145
HpyAV	CCTTC	5 cut(s)	122, 229, 260, 514, 524
HpyCH4III	ACNGT	3 cut(s)	148, 247, 539
HpyCH4IV	ACGT	2 cut(s)	302, 500
HpyCH4V	TGCA	3 cut(s)	176, 314, 365
HpyF10VI	GCNNNNNNNGC	1 cut(s)	365
HpyF3I	CTNAG	2 cut(s)	240, 275
HpySE526I	ACGT	2 cut(s)	302, 500
Hsp92II	CATG	6 cut(s)	88, 228, 314, 353, 376, 490
HspAI	GCGC	2 cut(s)	220, 260
KspI	CCGCGG	1 cut(s)	327
Kzo9I	GATC	1 cut(s)	190
LpnPI	CCDG	8 cut(s)	53, 143, 188, 248, 354, 490, 492, 534
Lsp1109I	GCAGC	2 cut(s)	88, 377
LweI	GCATC	2 cut(s)	163, 247
MaeI	CTAG	1 cut(s)	556
MaeII	ACGT	2 cut(s)	302, 500
MaeIII	GTNAC	5 cut(s)	55, 80, 89, 420, 551
MalI	GATC	1 cut(s)	192
MboI	GATC	1 cut(s)	190
MflI	RGATCY	1 cut(s)	190
MlsI	TGGCCA	1 cut(s)	309
MluCI	AATT	2 cut(s)	124, 289
MluNI	TGGCCA	1 cut(s)	309
MlyI	GAGTC	3 cut(s)	35, 428, 484
MmeI	TCCRAC	2 cut(s)	164, 389
MnlI	CCTC	4 cut(s)	59, 156, 270, 486
Mox20I	TGGCCA	1 cut(s)	309
Mph1103I	ATGCAT	1 cut(s)	178
MroXI	GAANNNNTTC	1 cut(s)	344
MscI	TGGCCA	1 cut(s)	309
MseI	TTAA	4 cut(s)	123, 179, 288, 387
MslI	CAYNNNNRTG	1 cut(s)	377
Msp20I	TGGCCA	1 cut(s)	309
MspA1I	CMGCKG	3 cut(s)	101, 326, 368
MspI	CCGG	1 cut(s)	40
MvnI	CGCG	2 cut(s)	117, 326
MwoI	GCNNNNNNNGC	1 cut(s)	365
NcoI	CCATGG	1 cut(s)	349
NdeII	GATC	1 cut(s)	190
NlaIII	CATG	6 cut(s)	88, 228, 314, 353, 376, 490
NlaIV	GGNNCC	3 cut(s)	192, 347, 525
NmuCI	GTSAC	4 cut(s)	80, 89, 420, 551
NsiI	ATGCAT	1 cut(s)	178
NspI	RCATGY	1 cut(s)	88
PciI	ACATGT	1 cut(s)	84
PdmI	GAANNNNTTC	1 cut(s)	344
PfeI	GAWTC	2 cut(s)	136, 482
PkrI	GCNGC	3 cut(s)	100, 103, 367
PleI	GAGTC	3 cut(s)	34, 427, 484
PpsI	GAGTC	3 cut(s)	34, 427, 484
PpuMI	RGGWCCY	1 cut(s)	524
PscI	ACATGT	1 cut(s)	84
PshBI	ATTAAT	1 cut(s)	179
Psp5II	RGGWCCY	1 cut(s)	524
PspN4I	GGNNCC	3 cut(s)	192, 347, 525
PspPI	GGNCC	3 cut(s)	279, 473, 524
PspPPI	RGGWCCY	1 cut(s)	524
PsuI	RGATCY	1 cut(s)	190
PvuII	CAGCTG	1 cut(s)	368
RsaI	GTAC	1 cut(s)	49
RsaNI	GTAC	1 cut(s)	48
RseI	CAYNNNNRTG	1 cut(s)	377
SacII	CCGCGG	1 cut(s)	327
SaqAI	TTAA	4 cut(s)	123, 179, 288, 387
SatI	GCNGC	3 cut(s)	99, 102, 366
Sau3AI	GATC	1 cut(s)	190
Sau96I	GGNCC	3 cut(s)	279, 473, 524
SchI	GAGTC	3 cut(s)	35, 428, 484
SetI	ASST	7 cut(s)	70, 271, 305, 361, 370, 469, 503
SfaNI	GCATC	2 cut(s)	163, 247
Sfr303I	CCGCGG	1 cut(s)	327
SgrBI	CCGCGG	1 cut(s)	327
SinI	GGWCC	1 cut(s)	524
SmiMI	CAYNNNNRTG	1 cut(s)	377
SmlI	CTYRAG	1 cut(s)	494
SmoI	CTYRAG	1 cut(s)	494
Sse9I	AATT	2 cut(s)	124, 289
SsiI	CCGC	5 cut(s)	99, 117, 324, 326, 400
SspMI	CTAG	1 cut(s)	556
StyI	CCWWGG	4 cut(s)	61, 252, 349, 403
TaaI	ACNGT	3 cut(s)	148, 247, 539
TaiI	ACGT	2 cut(s)	305, 503
TaqI	TCGA	1 cut(s)	29
TasI	AATT	2 cut(s)	124, 289
TatI	WGTACW	1 cut(s)	47
TauI	GCSGC	1 cut(s)	101
TfiI	GAWTC	2 cut(s)	136, 482
Tru1I	TTAA	4 cut(s)	123, 179, 288, 387
Tru9I	TTAA	4 cut(s)	123, 179, 288, 387
TscAI	CASTG	1 cut(s)	553
TseFI	GTSAC	4 cut(s)	80, 89, 420, 551
TseI	GCWGC	2 cut(s)	101, 365
Tsp45I	GTSAC	4 cut(s)	80, 89, 420, 551
TspDTI	ATGAA	3 cut(s)	17, 118, 248
TspRI	CASTG	1 cut(s)	553
VpaK11BI	GGWCC	1 cut(s)	524
VspI	ATTAAT	1 cut(s)	179
XagI	CCTNNNNNAGG	1 cut(s)	518
XceI	RCATGY	1 cut(s)	88
XmnI	GAANNNNTTC	1 cut(s)	344
XspI	CTAG	1 cut(s)	556
Zsp2I	ATGCAT	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.