FvH4_1g18410

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0005896
Physical Location & Seq
Forward (+)
10715277 .. 10718639
3363 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g18410.t2

Sequence Viewer

Length: 669 bp
ATGACTTCTTTATTTGAAATCCATCCAACGGAGACTACCGGGCAATACCTCCCCCTCCATTGCCGGCCAGTGAGTTTGGGTACGCCGCCGACCCTCCTTTCAGGCATTTCGGCGGATTTGGAAGGTCATCCAGAGGACTATGATACGGTGGATGTACAGGTTTTTTCGTTGAACAATGAAACGTGGGGGGAGGAGATTACGTCCCCTTGCTTCGCTGCCGTCGAGGGTCAAGGTGTTCTTGTCAACCAGAAGCTGCATTGGGTTCTCGACTACTATAACATTGATGATGATGGGGAGGAACATATCATTGCATTCGATTTGGAGACGGAGACGTTTCAGTCAATGCGGCTTCCATTTCCCAGTGCTGAACCAACCAATGACATTGATAACTTCGGTGTTGCTATTTCCCGCCACGAAGGGAATCTGTGTGTATGGTACTATAACAAGCGTGCTGCCTCCGTTGATTATTGGATCATGGAGATTTATGGGGAGAATGGTTCTTGGAGACGGTTTATCTTCAATATTTCCACTCAGCCTCCGATTAGTTTTCTTAAGCCGCTTATGGTTACAGAGAGTGCTATTGTGCTAGTGAGGTGTTCAACTACTGGGGTGTTGGAGTTGGTGCGGATCCGTGTGAACAAGGAGATGAGGAGCGTGCGGTGTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

223

Amino Acids

25.2

Weight (kDa)

4.62

Isoelectric Point (pI)

40.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 34 - 185 2.7e-13 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 337
AciI CCGC 7 cut(s) 86, 113, 346, 409, 557, 625, 658
AclWI GGATC 3 cut(s) 479, 622, 635
AcoI YGGCCR 1 cut(s) 65
AfaI GTAC 4 cut(s) 82, 156, 437, 664
AfiI CCNNNNNNNGG 1 cut(s) 28
AflII CTTAAG 1 cut(s) 551
AgsI TTSAA 4 cut(s) 17, 172, 520, 600
AluBI AGCT 1 cut(s) 253
AluI AGCT 1 cut(s) 253
Alw26I GTCTC 4 cut(s) 26, 317, 323, 499
AlwI GGATC 3 cut(s) 479, 622, 635
AlwNI CAGNNNCTG 1 cut(s) 253
AoxI GGCC 1 cut(s) 65
ApeKI GCWGC 3 cut(s) 215, 253, 452
AsuC2I CCSGG 1 cut(s) 40
BamHI GGATCC 1 cut(s) 627
BbvI GCAGC 3 cut(s) 202, 240, 439
BccI CCATC 2 cut(s) 30, 284
BceAI ACGGC 1 cut(s) 203
BcnI CCSGG 1 cut(s) 40
BcoDI GTCTC 4 cut(s) 26, 317, 323, 499
BfaI CTAG 1 cut(s) 587
BfrI CTTAAG 1 cut(s) 551
BisI GCNGC 6 cut(s) 86, 216, 254, 347, 453, 557
BlsI GCNGC 6 cut(s) 87, 217, 255, 348, 454, 558
Bme1390I CCNGG 1 cut(s) 40
BmiI GGNNCC 1 cut(s) 629
BmrFI CCNGG 1 cut(s) 40
BmrI ACTGGG 2 cut(s) 354, 615
BmuI ACTGGG 2 cut(s) 354, 615
BpuMI CCSGG 1 cut(s) 40
BsaXI ACNNNNNCTCC 4 cut(s) 185, 215, 520, 550
Bsc4I CCNNNNNNNGG 1 cut(s) 28
Bse118I RCCGGY 1 cut(s) 63
Bse1I ACTGG 3 cut(s) 68, 360, 610
Bse3DI GCAATG 2 cut(s) 58, 306
BseGI GGATG 3 cut(s) 22, 127, 157
BseLI CCNNNNNNNGG 1 cut(s) 28
BseMI GCAATG 2 cut(s) 58, 306
BseMII CTCAG 1 cut(s) 545
BseNI ACTGG 3 cut(s) 68, 360, 610
BseRI GAGGAG 2 cut(s) 206, 664
BseXI GCAGC 3 cut(s) 202, 240, 439
BshFI GGCC 1 cut(s) 67
BsiSI CCGG 2 cut(s) 39, 64
BslFI GGGAC 1 cut(s) 187
BslI CCNNNNNNNGG 1 cut(s) 28
BsmAI GTCTC 4 cut(s) 26, 317, 323, 499
BsmBI CGTCTC 3 cut(s) 317, 323, 499
BsmFI GGGAC 1 cut(s) 187
BsmI GAATGC 1 cut(s) 311
BsnI GGCC 1 cut(s) 67
Bsp1407I TGTACA 2 cut(s) 154, 662
Bsp143I GATC 2 cut(s) 471, 627
BspACI CCGC 7 cut(s) 86, 113, 346, 409, 557, 625, 658
BspANI GGCC 1 cut(s) 67
BspCNI CTCAG 1 cut(s) 544
BspLI GGNNCC 1 cut(s) 629
BspPI GGATC 3 cut(s) 479, 622, 635
BspTI CTTAAG 1 cut(s) 551
BsrDI GCAATG 2 cut(s) 58, 306
BsrFI RCCGGY 1 cut(s) 63
BsrGI TGTACA 2 cut(s) 154, 662
BsrI ACTGG 3 cut(s) 68, 360, 610
BssAI RCCGGY 1 cut(s) 63
BssMI GATC 2 cut(s) 471, 627
Bst4CI ACNGT 2 cut(s) 148, 510
BstAFI CTTAAG 1 cut(s) 551
BstAUI TGTACA 2 cut(s) 154, 662
BstC8I GCNNGC 3 cut(s) 65, 450, 656
BstDEI CTNAG 1 cut(s) 531
BstF5I GGATG 3 cut(s) 22, 127, 157
BstKTI GATC 2 cut(s) 474, 630
BstMAI GTCTC 4 cut(s) 26, 317, 323, 499
BstMBI GATC 2 cut(s) 471, 627
BstSCI CCNGG 1 cut(s) 38
BstV1I GCAGC 3 cut(s) 202, 240, 439
BstX2I RGATCY 1 cut(s) 627
BstYI RGATCY 1 cut(s) 627
BsuRI GGCC 1 cut(s) 67
BtsCI GGATG 3 cut(s) 22, 127, 157
BtsIMutI CAGTG 2 cut(s) 75, 367
Cac8I GCNNGC 3 cut(s) 65, 450, 656
CaiI CAGNNNCTG 1 cut(s) 253
Cfr10I RCCGGY 1 cut(s) 63
Csp6I GTAC 4 cut(s) 81, 155, 436, 663
CviAII CATG 2 cut(s) 475, 666
CviJI RGCY 5 cut(s) 67, 253, 349, 535, 556
CviKI_1 RGCY 5 cut(s) 67, 253, 349, 535, 556
CviQI GTAC 4 cut(s) 81, 155, 436, 663
DdeI CTNAG 1 cut(s) 531
DpnI GATC 2 cut(s) 473, 629
DpnII GATC 2 cut(s) 471, 627
DrdI GACNNNNNNGTC 1 cut(s) 337
DseDI GACNNNNNNGTC 1 cut(s) 337
EaeI YGGCCR 1 cut(s) 65
EciI GGCGGA 1 cut(s) 128
Esp3I CGTCTC 3 cut(s) 317, 323, 499
FaeI CATG 2 cut(s) 478, 669
FaiI YATR 9 cut(s) 141, 276, 303, 433, 441, 476, 486, 563, 667
FalI AAGNNNNNCTT 2 cut(s) 222, 254
FaqI GGGAC 1 cut(s) 187
FatI CATG 2 cut(s) 474, 665
FauI CCCGC 1 cut(s) 416
Fnu4HI GCNGC 6 cut(s) 86, 216, 254, 347, 453, 557
FokI GGATG 3 cut(s) 9, 114, 164
Fsp4HI GCNGC 6 cut(s) 86, 216, 254, 347, 453, 557
FspBI CTAG 1 cut(s) 587
GluI GCNGC 6 cut(s) 86, 216, 254, 347, 453, 557
HaeIII GGCC 1 cut(s) 67
HapII CCGG 2 cut(s) 39, 64
Hin1II CATG 2 cut(s) 478, 669
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HinfI GANTC 1 cut(s) 421
HpaII CCGG 2 cut(s) 39, 64
Hpy166II GTNNAC 3 cut(s) 244, 637, 663
Hpy188I TCNGA 1 cut(s) 540
Hpy188III TCNNGA 2 cut(s) 131, 266
Hpy8I GTNNAC 3 cut(s) 244, 637, 663
Hpy99I CGWCG 1 cut(s) 224
HpyAV CCTTC 2 cut(s) 116, 410
HpyCH4III ACNGT 2 cut(s) 148, 510
HpyCH4IV ACGT 3 cut(s) 182, 200, 332
HpyCH4V TGCA 2 cut(s) 256, 311
HpyF3I CTNAG 1 cut(s) 531
HpySE526I ACGT 3 cut(s) 182, 200, 332
Hsp92II CATG 2 cut(s) 478, 669
KroI GCCGGC 1 cut(s) 63
KroNI GCCGGC 1 cut(s) 65
Kzo9I GATC 2 cut(s) 471, 627
LmnI GCTCC 1 cut(s) 651
LpnPI CCDG 9 cut(s) 52, 77, 81, 87, 143, 144, 260, 373, 591
Lsp1109I GCAGC 3 cut(s) 202, 240, 439
MaeI CTAG 1 cut(s) 587
MaeII ACGT 3 cut(s) 182, 200, 332
MaeIII GTNAC 1 cut(s) 565
MalI GATC 2 cut(s) 473, 629
MboI GATC 2 cut(s) 471, 627
MboII GAAGA 1 cut(s) 508
MflI RGATCY 1 cut(s) 627
MmeI TCCRAC 2 cut(s) 50, 594
MroNI GCCGGC 1 cut(s) 63
MseI TTAA 1 cut(s) 552
MspCI CTTAAG 1 cut(s) 551
MspI CCGG 2 cut(s) 39, 64
MspR9I CCNGG 1 cut(s) 40
Mva1269I GAATGC 1 cut(s) 311
NaeI GCCGGC 1 cut(s) 65
NciI CCSGG 1 cut(s) 40
NdeII GATC 2 cut(s) 471, 627
NgoMIV GCCGGC 1 cut(s) 63
NlaIII CATG 2 cut(s) 478, 669
NlaIV GGNNCC 1 cut(s) 629
PcsI WCGNNNNNNNCGW 1 cut(s) 219
PctI GAATGC 1 cut(s) 311
PdiI GCCGGC 1 cut(s) 65
PfeI GAWTC 1 cut(s) 421
PkrI GCNGC 6 cut(s) 87, 217, 255, 348, 454, 558
PspN4I GGNNCC 1 cut(s) 629
PstNI CAGNNNCTG 1 cut(s) 253
PsuI RGATCY 1 cut(s) 627
RsaI GTAC 4 cut(s) 82, 156, 437, 664
RsaNI GTAC 4 cut(s) 81, 155, 436, 663
SaqAI TTAA 1 cut(s) 552
SatI GCNGC 6 cut(s) 86, 216, 254, 347, 453, 557
Sau3AI GATC 2 cut(s) 471, 627
ScrFI CCNGG 1 cut(s) 40
SetI ASST 9 cut(s) 51, 127, 162, 185, 203, 235, 255, 335, 596
SmlI CTYRAG 1 cut(s) 551
SmoI CTYRAG 1 cut(s) 551
SsiI CCGC 7 cut(s) 86, 113, 346, 409, 557, 625, 658
SspI AATATT 1 cut(s) 523
SspMI CTAG 1 cut(s) 587
StyD4I CCNGG 1 cut(s) 38
TaaI ACNGT 2 cut(s) 148, 510
TaiI ACGT 3 cut(s) 185, 203, 335
TaqI TCGA 3 cut(s) 222, 267, 315
TatI WGTACW 2 cut(s) 154, 662
TauI GCSGC 3 cut(s) 88, 349, 559
TfiI GAWTC 1 cut(s) 421
Tru1I TTAA 1 cut(s) 552
Tru9I TTAA 1 cut(s) 552
TscAI CASTG 2 cut(s) 75, 367
TseI GCWGC 3 cut(s) 215, 253, 452
TspDTI ATGAA 1 cut(s) 192
TspGWI ACGGA 4 cut(s) 44, 341, 448, 620
TspRI CASTG 2 cut(s) 75, 367
Vha464I CTTAAG 1 cut(s) 551
XspI CTAG 1 cut(s) 587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.