Rmu_sc0010364.1_g000003

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010364.1
OG0005896
Physical Location & Seq
Forward (+)
25372 .. 26428
1057 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010364.1_g000003.1.cds

Sequence Viewer

Length: 669 bp
atggcagtccggcagttgtttggagataccggcggggcagaacacttggtggtctggcggcggtggctgtggtggggatgggccaggcttggctggcggcttatggtcttccttcggagatcgtactttcgccgtaaagctcgcctcccctttaacccgacccgactacgacgtcttgctattgggctcctgtgtcaaggcgttattgtaaacgagaagttgcattgggtaattgaggactacaatctcaagtttgatgacaaggaggatcctattgttgtctttgatttggagatggaggagtttcagagattgtggcttccgtttcctaaggttgaaagagatgacagtgtgaattttagagttgcgattttttacagtgaagggtgtctatttctatggcgttatggaagtcttgctgcctctagttctgttgatttttgggtcatggaaaggtatggagacaatgactcgtggaacatgctttatagctttaggatttccaacgagtctccgattaagtttctgaagccacttgtagttgcggagagtagtcaagttctggtgagatgttctactgctgcagagctggagttggtaaggatttgtggacaagaagaggagcgtggtacctatatgaacgaggccgagcaaatgttatggacatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

222

Amino Acids

26.47

Weight (kDa)

6.21

Isoelectric Point (pI)

52.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 171
AatII GACGTC 1 cut(s) 175
Acc65I GGTACC 1 cut(s) 629
AccB1I GGYRCC 1 cut(s) 629
AciI CCGC 5 cut(s) 33, 58, 61, 97, 545
AclWI GGATC 2 cut(s) 263, 276
AcsI RAATTY 1 cut(s) 355
AcuI CTGAAG 1 cut(s) 548
AcyI GRCGYC 1 cut(s) 172
AdeI CACNNNGTG 1 cut(s) 49
AfaI GTAC 2 cut(s) 125, 631
AgsI TTSAA 1 cut(s) 338
AjnI CCWGG 1 cut(s) 83
AluBI AGCT 3 cut(s) 140, 492, 589
AluI AGCT 3 cut(s) 140, 492, 589
Alw26I GTCTC 2 cut(s) 456, 516
AlwI GGATC 2 cut(s) 263, 276
AoxI GGCC 2 cut(s) 81, 645
ApeKI GCWGC 2 cut(s) 419, 581
ApoI RAATTY 1 cut(s) 355
Asp718I GGTACC 1 cut(s) 629
AspS9I GGNCC 1 cut(s) 81
AsuHPI GGTGA 1 cut(s) 577
AxyI CCTNAGG 1 cut(s) 330
BamHI GGATCC 1 cut(s) 268
BanI GGYRCC 1 cut(s) 629
BanII GRGCYC 1 cut(s) 189
BauI CACGAG 1 cut(s) 472
BbsI GAAGAC 1 cut(s) 100
BbvI GCAGC 2 cut(s) 406, 568
BccI CCATC 2 cut(s) 72, 289
BceAI ACGGC 1 cut(s) 117
BciT130I CCWGG 1 cut(s) 85
BcoDI GTCTC 2 cut(s) 456, 516
BfaI CTAG 1 cut(s) 426
BfmI CTRYAG 1 cut(s) 582
BisI GCNGC 4 cut(s) 59, 98, 420, 582
BlsI GCNGC 4 cut(s) 60, 99, 421, 583
Bme1390I CCNGG 1 cut(s) 85
BmgT120I GGNCC 1 cut(s) 81
BmiI GGNNCC 3 cut(s) 188, 270, 631
BmrFI CCNGG 1 cut(s) 85
BpiI GAAGAC 1 cut(s) 100
BpmI CTGGAG 1 cut(s) 611
BpuEI CTTGAG 1 cut(s) 233
BsaHI GRCGYC 1 cut(s) 172
Bse118I RCCGGY 1 cut(s) 29
Bse21I CCTNAGG 1 cut(s) 330
BseBI CCWGG 1 cut(s) 85
BseGI GGATG 1 cut(s) 83
BseRI GAGGAG 2 cut(s) 314, 635
BseXI GCAGC 2 cut(s) 406, 568
BshFI GGCC 2 cut(s) 83, 647
BshNI GGYRCC 1 cut(s) 629
BsiSI CCGG 2 cut(s) 10, 30
BsmAI GTCTC 2 cut(s) 456, 516
BsnI GGCC 2 cut(s) 83, 647
Bsp1286I GDGCHC 1 cut(s) 189
Bsp143I GATC 2 cut(s) 119, 268
BspACI CCGC 5 cut(s) 33, 58, 61, 97, 545
BspANI GGCC 2 cut(s) 83, 647
BspLI GGNNCC 3 cut(s) 188, 270, 631
BspMAI CTGCAG 1 cut(s) 586
BspPI GGATC 2 cut(s) 263, 276
BspT107I GGYRCC 1 cut(s) 629
BsrFI RCCGGY 1 cut(s) 29
BssAI RCCGGY 1 cut(s) 29
BssMI GATC 2 cut(s) 119, 268
BssNI GRCGYC 1 cut(s) 172
BssSI CACGAG 1 cut(s) 472
Bst2BI CACGAG 1 cut(s) 472
Bst2UI CCWGG 1 cut(s) 85
Bst4CI ACNGT 2 cut(s) 350, 380
Bst6I CTCTTC 1 cut(s) 612
BstACI GRCGYC 1 cut(s) 172
BstC8I GCNNGC 2 cut(s) 95, 142
BstDEI CTNAG 1 cut(s) 330
BstF5I GGATG 1 cut(s) 83
BstKTI GATC 2 cut(s) 122, 271
BstMAI GTCTC 2 cut(s) 456, 516
BstMBI GATC 2 cut(s) 119, 268
BstMWI GCNNNNNNNGC 2 cut(s) 64, 94
BstNI CCWGG 1 cut(s) 85
BstNSI RCATGY 1 cut(s) 484
BstSCI CCNGG 1 cut(s) 83
BstSFI CTRYAG 1 cut(s) 582
BstV1I GCAGC 2 cut(s) 406, 568
BstV2I GAAGAC 1 cut(s) 100
BstX2I RGATCY 1 cut(s) 268
BstYI RGATCY 1 cut(s) 268
Bsu36I CCTNAGG 1 cut(s) 330
BsuRI GGCC 2 cut(s) 83, 647
BtsCI GGATG 1 cut(s) 83
BtsIMutI CAGTG 2 cut(s) 355, 385
Cac8I GCNNGC 2 cut(s) 95, 142
Cfr10I RCCGGY 1 cut(s) 29
Cfr13I GGNCC 1 cut(s) 81
Csp6I GTAC 2 cut(s) 124, 630
CviAII CATG 3 cut(s) 448, 481, 666
CviQI GTAC 2 cut(s) 124, 630
DdeI CTNAG 1 cut(s) 330
DpnI GATC 2 cut(s) 121, 270
DpnII GATC 2 cut(s) 119, 268
DraIII CACNNNGTG 1 cut(s) 49
DrdI GACNNNNNNGTC 1 cut(s) 171
DseDI GACNNNNNNGTC 1 cut(s) 171
Eam1104I CTCTTC 1 cut(s) 612
EarI CTCTTC 1 cut(s) 612
Eco24I GRGCYC 1 cut(s) 189
Eco57I CTGAAG 1 cut(s) 548
Eco81I CCTNAGG 1 cut(s) 330
EcoRII CCWGG 1 cut(s) 83
EcoT38I GRGCYC 1 cut(s) 189
FaeI CATG 3 cut(s) 451, 484, 669
FatI CATG 3 cut(s) 447, 480, 665
FauI CCCGC 1 cut(s) 26
Fnu4HI GCNGC 4 cut(s) 59, 98, 420, 582
FokI GGATG 1 cut(s) 90
FriOI GRGCYC 1 cut(s) 189
Fsp4HI GCNGC 4 cut(s) 59, 98, 420, 582
FspBI CTAG 1 cut(s) 426
GluI GCNGC 4 cut(s) 59, 98, 420, 582
GsuI CTGGAG 1 cut(s) 611
HaeIII GGCC 2 cut(s) 83, 647
HapII CCGG 2 cut(s) 10, 30
Hin1I GRCGYC 1 cut(s) 172
Hin1II CATG 3 cut(s) 451, 484, 669
HinfI GANTC 2 cut(s) 470, 509
HpaII CCGG 2 cut(s) 10, 30
HphI GGTGA 1 cut(s) 577
Hpy166II GTNNAC 2 cut(s) 211, 611
Hpy188I TCNGA 4 cut(s) 117, 309, 516, 528
Hpy8I GTNNAC 2 cut(s) 211, 611
Hpy99I CGWCG 1 cut(s) 174
HpyAV CCTTC 2 cut(s) 122, 377
HpyCH4III ACNGT 2 cut(s) 350, 380
HpyCH4IV ACGT 1 cut(s) 172
HpyCH4V TGCA 2 cut(s) 223, 584
HpyF10VI GCNNNNNNNGC 2 cut(s) 64, 94
HpyF3I CTNAG 1 cut(s) 330
HpySE526I ACGT 1 cut(s) 172
Hsp92I GRCGYC 1 cut(s) 172
Hsp92II CATG 3 cut(s) 451, 484, 669
KpnI GGTACC 1 cut(s) 633
Kzo9I GATC 2 cut(s) 119, 268
LmnI GCTCC 2 cut(s) 192, 622
LpnPI CCDG 9 cut(s) 23, 40, 43, 70, 79, 97, 203, 548, 575
Lsp1109I GCAGC 2 cut(s) 406, 568
MaeI CTAG 1 cut(s) 426
MaeII ACGT 1 cut(s) 172
MalI GATC 2 cut(s) 121, 270
MboI GATC 2 cut(s) 119, 268
MboII GAAGA 2 cut(s) 100, 629
MflI RGATCY 1 cut(s) 268
MhlI GDGCHC 1 cut(s) 189
MluCI AATT 2 cut(s) 231, 355
MlyI GAGTC 2 cut(s) 464, 518
MmeI TCCRAC 1 cut(s) 528
MnlI CCTC 7 cut(s) 155, 229, 259, 292, 433, 613, 637
MseI TTAA 2 cut(s) 153, 519
MspI CCGG 2 cut(s) 10, 30
MspR9I CCNGG 1 cut(s) 85
MvaI CCWGG 1 cut(s) 85
MwoI GCNNNNNNNGC 2 cut(s) 64, 94
NdeII GATC 2 cut(s) 119, 268
NlaIII CATG 3 cut(s) 451, 484, 669
NlaIV GGNNCC 3 cut(s) 188, 270, 631
NspI RCATGY 1 cut(s) 484
PkrI GCNGC 4 cut(s) 60, 99, 421, 583
PleI GAGTC 2 cut(s) 464, 517
PpsI GAGTC 2 cut(s) 464, 517
Psp6I CCWGG 1 cut(s) 83
PspGI CCWGG 1 cut(s) 83
PspN4I GGNNCC 3 cut(s) 188, 270, 631
PspPI GGNCC 1 cut(s) 81
PstI CTGCAG 1 cut(s) 586
PsuI RGATCY 1 cut(s) 268
RsaI GTAC 2 cut(s) 125, 631
RsaNI GTAC 2 cut(s) 124, 630
SaqAI TTAA 2 cut(s) 153, 519
SatI GCNGC 4 cut(s) 59, 98, 420, 582
Sau3AI GATC 2 cut(s) 119, 268
Sau96I GGNCC 1 cut(s) 81
SchI GAGTC 2 cut(s) 464, 518
ScrFI CCNGG 1 cut(s) 85
SduI GDGCHC 1 cut(s) 189
SetI ASST 7 cut(s) 142, 175, 336, 458, 494, 591, 635
SfcI CTRYAG 1 cut(s) 582
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
Sse9I AATT 2 cut(s) 231, 355
SsiI CCGC 5 cut(s) 33, 58, 61, 97, 545
SspMI CTAG 1 cut(s) 426
StyD4I CCNGG 1 cut(s) 83
TaaI ACNGT 2 cut(s) 350, 380
TaiI ACGT 1 cut(s) 175
TasI AATT 2 cut(s) 231, 355
TauI GCSGC 2 cut(s) 61, 100
Tru1I TTAA 2 cut(s) 153, 519
Tru9I TTAA 2 cut(s) 153, 519
TscAI CASTG 2 cut(s) 355, 385
TseI GCWGC 2 cut(s) 419, 581
TspDTI ATGAA 1 cut(s) 653
TspGWI ACGGA 1 cut(s) 312
TspRI CASTG 2 cut(s) 355, 385
XapI RAATTY 1 cut(s) 355
XceI RCATGY 1 cut(s) 484
XspI CTAG 1 cut(s) 426
ZraI GACGTC 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.