Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0005896

Physical Location & Seq

Genomic Coordinates Forward (+)

29909179 .. 29947086

Gene Structure 37908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG149700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGAAGGAGAATATGCAAGATCCTGCCCAACATAGCCATACACAAGGTGACGCTGTAAATCCAAGCGGTGGTAAGGATGAAGCAATTAATGCAAGAATGGTGTGGAAATCATTAGTCATGCAGTTTTCCTTACGGTCAGAACATATCCTCGAACGTCGTTTACAAACGAACGTACAAGGAACCTGGAATACCATACTCGTATTCTCATGTGTGATTGCAGTCTCAGTTGATCCTTTGTTCTTTTACCTTCCGATCATTAATGAGGAAATCAAGTGCGTTGGAGTGGACAAAAATTTGAGGACTGCTGCTCTTCTTTTGCGCGCTGTCACTGATATTGCTTTCATCCTGAACATTTTCTATGAAATTAAAAATGTCATCGAAAATCTAAAATCTAGAGCAAAGTCGATGAAAAGTAAAGGAAAGCAGATAATTCCCAGAAGTTGGTTCCTTAAGGAATTAGCTCGAAAGATGCCATGGCACTCGATTACAATTGATATTCTTGCGGTTCTCCCTATCCCACAATCCAATGCATTCCCACTGGTGGTGCCGTTTTGTGGTGGCTTGTCTAGGCCTAGGCGAGCGCGACTCAAAGGCAATGTTGTATTGACGGAGGAGTTGGCAGATCTGGGTAGATCTTGGCGGGCGCGATTGGAGATTTTGCGGCCTTCCGGGTCGGGTCAGATTTGCGAGATTGGCCTTAAATATCATGGATTTGGGTACGTCTCTGCCACAAAAGACTACAAGCTCATCTTGTCTGCTGATTATGGTGACCTTGTTGATCCACGGATTGAAGAGGAGAAGGTCCAGGTGTTTTCAATGAGGAATGAAATGTGGAAGAGGATGGATTCGCCTTGCGGCTCTATCCTCGAGTGTCAAGGTGTTATTGTAAACGAGAAGCTGCATTGGGTGATTGAGGACTACAATCTCAAGTTTGATGACGAGGAGGACCCTATTGTTGTCTTTGATTTGGAGATGGAGGAGTTTCGGAGACTGCGGCTTCCGTTTCCTAAGCCTGATGCTTTAGAAACTGCTGGACTAAGATTGGATGAACCAAGCTCTTCTACGAACACTGCTGCAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans

Protein Analysis

360

Amino Acids

40.93

Weight (kDa)

6.63

Isoelectric Point (pI)

53.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005896)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18410 FvH4_1g18410
rosa_chinensis	RchiOBHm_Chr2g0109111
rosa_laevigata	RLG00000008160 RLG00000008316 RLG00000008418 RLG00000009006 RLG00000012163 RLG00000021316 RLG00000027390 RLG00000032253 RLG00000033851
rosa_multiflora	Rmu_sc0000186.1_g000009 Rmu_sc0000363.1_g000034 Rmu_sc0000820.1_g000019 Rmu_sc0006431.1_g000002 Rmu_sc0010364.1_g000003 Rmu_sc0023232.1_g000001 Rmu_ssc0000114.1_g000057
rosa_roxburghii	Rroxscaffold_2G00092820 Rroxscaffold_7G00189280
rosa_samantha	Rh2AG209000 Rh2AG289900 Rh2AG384200 Rh2BG219400 Rh4DG149700 Rh6AG171600 Rh7DG394000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	544
AccB7I	CCANNNNNTGG	2 cut(s)	68, 441
AccII	CGCG	3 cut(s)	321, 583, 646
AciI	CCGC	6 cut(s)	66, 503, 640, 661, 855, 994
AclWI	GGATC	3 cut(s)	14, 224, 773
AcsI	RAATTY	1 cut(s)	292
AdeI	CACNNNGTG	1 cut(s)	47
AfaI	GTAC	2 cut(s)	174, 719
AfiI	CCNNNNNNNGG	4 cut(s)	68, 441, 541, 554
AflII	CTTAAG	1 cut(s)	449
AgsI	TTSAA	2 cut(s)	791, 816
AjnI	CCWGG	2 cut(s)	182, 804
AluBI	AGCT	4 cut(s)	461, 745, 898, 1056
AluI	AGCT	4 cut(s)	461, 745, 898, 1056
Alw26I	GTCTC	3 cut(s)	226, 727, 982
AlwI	GGATC	3 cut(s)	14, 224, 773
Ama87I	CYCGRG	1 cut(s)	866
AoxI	GGCC	3 cut(s)	569, 662, 694
ApeKI	GCWGC	3 cut(s)	305, 898, 1073
ApoI	RAATTY	1 cut(s)	292
AseI	ATTAAT	2 cut(s)	87, 258
Asp700I	GAANNNNTTC	1 cut(s)	353
AspA2I	CCTAGG	1 cut(s)	572
AspLEI	GCGC	4 cut(s)	321, 323, 583, 646
AspS9I	GGNCC	2 cut(s)	802, 946
AsuC2I	CCSGG	1 cut(s)	670
AsuHPI	GGTGA	3 cut(s)	59, 779, 919
AvaI	CYCGRG	1 cut(s)	866
AvaII	GGWCC	2 cut(s)	802, 946
AvrII	CCTAGG	1 cut(s)	572
BanI	GGYRCC	1 cut(s)	544
BbvI	GCAGC	3 cut(s)	292, 885, 1060
BccI	CCATC	2 cut(s)	835, 967
BceAI	ACGGC	1 cut(s)	532
BciT130I	CCWGG	2 cut(s)	184, 806
BcnI	CCSGG	1 cut(s)	670
BcoDI	GTCTC	3 cut(s)	226, 727, 982
BfaI	CTAG	3 cut(s)	393, 567, 573
BfrI	CTTAAG	1 cut(s)	449
BglII	AGATCT	2 cut(s)	622, 632
BisI	GCNGC	6 cut(s)	306, 662, 856, 899, 995, 1074
BlnI	CCTAGG	1 cut(s)	572
BlsI	GCNGC	6 cut(s)	307, 663, 857, 900, 996, 1075
Bme1390I	CCNGG	3 cut(s)	184, 670, 806
Bme18I	GGWCC	2 cut(s)	802, 946
BmeT110I	CYCGRG	1 cut(s)	866
BmgT120I	GGNCC	2 cut(s)	802, 946
BmiI	GGNNCC	4 cut(s)	181, 446, 546, 948
BmrFI	CCNGG	3 cut(s)	184, 670, 806
BmsI	GCATC	2 cut(s)	459, 1006
BplI	GAGNNNNNCTC	2 cut(s)	570, 602
Bpu10I	CCTNAGC	1 cut(s)	1008
BpuEI	CTTGAG	1 cut(s)	911
BpuMI	CCSGG	1 cut(s)	670
BsaJI	CCNNGG	3 cut(s)	473, 572, 782
Bsc4I	CCNNNNNNNGG	4 cut(s)	68, 441, 541, 554
Bse1I	ACTGG	1 cut(s)	543
Bse3DI	GCAATG	1 cut(s)	601
BseBI	CCWGG	2 cut(s)	184, 806
BseDI	CCNNGG	3 cut(s)	473, 572, 782
BseGI	GGATG	4 cut(s)	82, 342, 846, 1051
BseLI	CCNNNNNNNGG	4 cut(s)	68, 441, 541, 554
BseMI	GCAATG	1 cut(s)	601
BseMII	CTCAG	1 cut(s)	237
BseNI	ACTGG	1 cut(s)	543
BsePI	GCGCGC	1 cut(s)	319
BseRI	GAGGAG	4 cut(s)	626, 809, 956, 992
BseXI	GCAGC	3 cut(s)	292, 885, 1060
Bsh1236I	CGCG	3 cut(s)	321, 583, 646
BshFI	GGCC	3 cut(s)	571, 664, 696
BshNI	GGYRCC	1 cut(s)	544
BsiHKCI	CYCGRG	1 cut(s)	866
BsiSI	CCGG	1 cut(s)	669
BslI	CCNNNNNNNGG	4 cut(s)	68, 441, 541, 554
BsmAI	GTCTC	3 cut(s)	226, 727, 982
BsmBI	CGTCTC	1 cut(s)	727
BsmI	GAATGC	1 cut(s)	530
BsnI	GGCC	3 cut(s)	571, 664, 696
BsoBI	CYCGRG	1 cut(s)	866
Bsp143I	GATC	6 cut(s)	19, 229, 252, 622, 632, 778
Bsp19I	CCATGG	1 cut(s)	473
BspACI	CCGC	6 cut(s)	66, 503, 640, 661, 855, 994
BspANI	GGCC	3 cut(s)	571, 664, 696
BspCNI	CTCAG	1 cut(s)	236
BspFNI	CGCG	3 cut(s)	321, 583, 646
BspLI	GGNNCC	4 cut(s)	181, 446, 546, 948
BspPI	GGATC	3 cut(s)	14, 224, 773
BspQI	GCTCTTC	2 cut(s)	315, 1063
BspT107I	GGYRCC	1 cut(s)	544
BspTI	CTTAAG	1 cut(s)	449
BsrDI	GCAATG	1 cut(s)	601
BsrI	ACTGG	1 cut(s)	543
BssECI	CCNNGG	3 cut(s)	473, 572, 782
BssHII	GCGCGC	1 cut(s)	319
BssMI	GATC	6 cut(s)	19, 229, 252, 622, 632, 778
BssT1I	CCWWGG	2 cut(s)	473, 572
Bst2UI	CCWGG	2 cut(s)	184, 806
Bst4CI	ACNGT	1 cut(s)	135
Bst6I	CTCTTC	4 cut(s)	315, 786, 830, 1063
BstAFI	CTTAAG	1 cut(s)	449
BstAPI	GCANNNNNTGC	1 cut(s)	89
BstC8I	GCNNGC	3 cut(s)	321, 579, 642
BstDEI	CTNAG	3 cut(s)	223, 1008, 1037
BstDSI	CCRYGG	2 cut(s)	473, 782
BstEII	GGTNACC	1 cut(s)	767
BstF5I	GGATG	4 cut(s)	82, 342, 846, 1051
BstFNI	CGCG	3 cut(s)	321, 583, 646
BstHHI	GCGC	4 cut(s)	321, 323, 583, 646
BstKTI	GATC	6 cut(s)	22, 232, 255, 625, 635, 781
BstMAI	GTCTC	3 cut(s)	226, 727, 982
BstMBI	GATC	6 cut(s)	19, 229, 252, 622, 632, 778
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 693
BstNI	CCWGG	2 cut(s)	184, 806
BstPI	GGTNACC	1 cut(s)	767
BstSCI	CCNGG	3 cut(s)	182, 668, 804
BstUI	CGCG	3 cut(s)	321, 583, 646
BstV1I	GCAGC	3 cut(s)	292, 885, 1060
BstX2I	RGATCY	3 cut(s)	19, 622, 632
BstYI	RGATCY	3 cut(s)	19, 622, 632
BsuRI	GGCC	3 cut(s)	571, 664, 696
BtgI	CCRYGG	2 cut(s)	473, 782
BtsCI	GGATG	4 cut(s)	82, 342, 846, 1051
BtsI	GCAGTG	1 cut(s)	1068
BtsIMutI	CAGTG	3 cut(s)	327, 536, 1068
Cac8I	GCNNGC	3 cut(s)	321, 579, 642
CfoI	GCGC	4 cut(s)	321, 323, 583, 646
Cfr13I	GGNCC	2 cut(s)	802, 946
CseI	GACGC	1 cut(s)	59
Csp6I	GTAC	2 cut(s)	173, 718
CviAII	CATG	4 cut(s)	118, 207, 474, 707
CviQI	GTAC	2 cut(s)	173, 718
DdeI	CTNAG	3 cut(s)	223, 1008, 1037
DpnI	GATC	6 cut(s)	21, 231, 254, 624, 634, 780
DpnII	GATC	6 cut(s)	19, 229, 252, 622, 632, 778
DraIII	CACNNNGTG	1 cut(s)	47
Eam1104I	CTCTTC	4 cut(s)	315, 786, 830, 1063
EarI	CTCTTC	4 cut(s)	315, 786, 830, 1063
Eco130I	CCWWGG	2 cut(s)	473, 572
Eco147I	AGGCCT	1 cut(s)	571
Eco47I	GGWCC	2 cut(s)	802, 946
Eco88I	CYCGRG	1 cut(s)	866
Eco91I	GGTNACC	1 cut(s)	767
EcoO109I	RGGNCCY	1 cut(s)	946
EcoO65I	GGTNACC	1 cut(s)	767
EcoRII	CCWGG	2 cut(s)	182, 804
EcoT14I	CCWWGG	2 cut(s)	473, 572
EcoT22I	ATGCAT	1 cut(s)	532
ErhI	CCWWGG	2 cut(s)	473, 572
Esp3I	CGTCTC	1 cut(s)	727
FaeI	CATG	4 cut(s)	121, 210, 477, 710
FalI	AAGNNNNNCTT	2 cut(s)	734, 766
FatI	CATG	4 cut(s)	117, 206, 473, 706
FauI	CCCGC	1 cut(s)	633
Fnu4HI	GCNGC	6 cut(s)	306, 662, 856, 899, 995, 1074
FokI	GGATG	4 cut(s)	89, 329, 853, 1058
Fsp4HI	GCNGC	6 cut(s)	306, 662, 856, 899, 995, 1074
FspBI	CTAG	3 cut(s)	393, 567, 573
GlaI	GCGC	4 cut(s)	320, 322, 582, 645
GluI	GCNGC	6 cut(s)	306, 662, 856, 899, 995, 1074
HaeIII	GGCC	3 cut(s)	571, 664, 696
HapII	CCGG	1 cut(s)	669
HgaI	GACGC	1 cut(s)	59
HhaI	GCGC	4 cut(s)	321, 323, 583, 646
Hin1II	CATG	4 cut(s)	121, 210, 477, 710
Hin6I	GCGC	4 cut(s)	319, 321, 581, 644
HinP1I	GCGC	4 cut(s)	319, 321, 581, 644
HinfI	GANTC	2 cut(s)	585, 845
HpaII	CCGG	1 cut(s)	669
HphI	GGTGA	3 cut(s)	59, 779, 919
Hpy166II	GTNNAC	3 cut(s)	161, 286, 889
Hpy188I	TCNGA	4 cut(s)	139, 252, 681, 987
Hpy188III	TCNNGA	2 cut(s)	346, 393
Hpy8I	GTNNAC	3 cut(s)	161, 286, 889
Hpy99I	CGWCG	1 cut(s)	159
HpyAV	CCTTC	3 cut(s)	257, 675, 793
HpyCH4III	ACNGT	1 cut(s)	135
HpyCH4IV	ACGT	3 cut(s)	154, 171, 720
HpyCH4V	TGCA	7 cut(s)	16, 92, 121, 218, 530, 901, 1076
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 693
HpyF3I	CTNAG	3 cut(s)	223, 1008, 1037
HpySE526I	ACGT	3 cut(s)	154, 171, 720
Hsp92II	CATG	4 cut(s)	121, 210, 477, 710
HspAI	GCGC	4 cut(s)	319, 321, 581, 644
Kzo9I	GATC	6 cut(s)	19, 229, 252, 622, 632, 778
LguI	GCTCTTC	2 cut(s)	315, 1063
Lsp1109I	GCAGC	3 cut(s)	292, 885, 1060
LweI	GCATC	2 cut(s)	459, 1006
MaeI	CTAG	3 cut(s)	393, 567, 573
MaeII	ACGT	3 cut(s)	154, 171, 720
MaeIII	GTNAC	3 cut(s)	47, 325, 767
MalI	GATC	6 cut(s)	21, 231, 254, 624, 634, 780
MboI	GATC	6 cut(s)	19, 229, 252, 622, 632, 778
MboII	GAAGA	4 cut(s)	302, 803, 847, 1050
MfeI	CAATTG	1 cut(s)	489
MflI	RGATCY	3 cut(s)	19, 622, 632
MluCI	AATT	6 cut(s)	84, 292, 363, 429, 455, 489
MlyI	GAGTC	1 cut(s)	579
MmeI	TCCRAC	1 cut(s)	259
Mph1103I	ATGCAT	1 cut(s)	532
MroXI	GAANNNNTTC	1 cut(s)	353
MseI	TTAA	5 cut(s)	87, 258, 366, 450, 699
MspCI	CTTAAG	1 cut(s)	449
MspI	CCGG	1 cut(s)	669
MspR9I	CCNGG	3 cut(s)	184, 670, 806
MunI	CAATTG	1 cut(s)	489
Mva1269I	GAATGC	1 cut(s)	530
MvaI	CCWGG	2 cut(s)	184, 806
MvnI	CGCG	3 cut(s)	321, 583, 646
MwoI	GCNNNNNNNGC	2 cut(s)	89, 693
NciI	CCSGG	1 cut(s)	670
NcoI	CCATGG	1 cut(s)	473
NdeII	GATC	6 cut(s)	19, 229, 252, 622, 632, 778
NlaIII	CATG	4 cut(s)	121, 210, 477, 710
NlaIV	GGNNCC	4 cut(s)	181, 446, 546, 948
NmuCI	GTSAC	3 cut(s)	47, 325, 767
NsiI	ATGCAT	1 cut(s)	532
PaeR7I	CTCGAG	1 cut(s)	866
PauI	GCGCGC	1 cut(s)	319
PceI	AGGCCT	1 cut(s)	571
PciSI	GCTCTTC	2 cut(s)	315, 1063
PctI	GAATGC	1 cut(s)	530
PdmI	GAANNNNTTC	1 cut(s)	353
PfeI	GAWTC	1 cut(s)	845
PflMI	CCANNNNNTGG	2 cut(s)	68, 441
PkrI	GCNGC	6 cut(s)	307, 663, 857, 900, 996, 1075
PleI	GAGTC	1 cut(s)	579
PpsI	GAGTC	1 cut(s)	579
PpuMI	RGGWCCY	1 cut(s)	946
PshBI	ATTAAT	2 cut(s)	87, 258
Psp5II	RGGWCCY	1 cut(s)	946
Psp6I	CCWGG	2 cut(s)	182, 804
PspEI	GGTNACC	1 cut(s)	767
PspGI	CCWGG	2 cut(s)	182, 804
PspN4I	GGNNCC	4 cut(s)	181, 446, 546, 948
PspPI	GGNCC	2 cut(s)	802, 946
PspPPI	RGGWCCY	1 cut(s)	946
PspXI	VCTCGAGB	1 cut(s)	866
PsrI	GAACNNNNNNTAC	4 cut(s)	144, 172, 176, 204
PsuI	RGATCY	3 cut(s)	19, 622, 632
PteI	GCGCGC	1 cut(s)	319
RsaI	GTAC	2 cut(s)	174, 719
RsaNI	GTAC	2 cut(s)	173, 718
SapI	GCTCTTC	2 cut(s)	315, 1063
SaqAI	TTAA	5 cut(s)	87, 258, 366, 450, 699
SatI	GCNGC	6 cut(s)	306, 662, 856, 899, 995, 1074
Sau3AI	GATC	6 cut(s)	19, 229, 252, 622, 632, 778
Sau96I	GGNCC	2 cut(s)	802, 946
SchI	GAGTC	1 cut(s)	579
ScrFI	CCNGG	3 cut(s)	184, 670, 806
SfaNI	GCATC	2 cut(s)	459, 1006
Sfr274I	CTCGAG	1 cut(s)	866
SinI	GGWCC	2 cut(s)	802, 946
SlaI	CTCGAG	1 cut(s)	866
SmlI	CTYRAG	3 cut(s)	449, 866, 926
SmoI	CTYRAG	3 cut(s)	449, 866, 926
Sse9I	AATT	6 cut(s)	84, 292, 363, 429, 455, 489
SseBI	AGGCCT	1 cut(s)	571
SsiI	CCGC	6 cut(s)	66, 503, 640, 661, 855, 994
SspMI	CTAG	3 cut(s)	393, 567, 573
StuI	AGGCCT	1 cut(s)	571
StyD4I	CCNGG	3 cut(s)	182, 668, 804
StyI	CCWWGG	2 cut(s)	473, 572
TaaI	ACNGT	1 cut(s)	135
TaiI	ACGT	3 cut(s)	157, 174, 723
TaqI	TCGA	6 cut(s)	150, 378, 404, 463, 482, 867
TasI	AATT	6 cut(s)	84, 292, 363, 429, 455, 489
TauI	GCSGC	3 cut(s)	664, 858, 997
TfiI	GAWTC	1 cut(s)	845
Tru1I	TTAA	5 cut(s)	87, 258, 366, 450, 699
Tru9I	TTAA	5 cut(s)	87, 258, 366, 450, 699
TscAI	CASTG	3 cut(s)	334, 543, 1075
TseFI	GTSAC	3 cut(s)	47, 325, 767
TseI	GCWGC	3 cut(s)	305, 898, 1073
Tsp45I	GTSAC	3 cut(s)	47, 325, 767
TspDTI	ATGAA	7 cut(s)	17, 93, 331, 375, 422, 840, 1062
TspGWI	ACGGA	3 cut(s)	623, 799, 990
TspRI	CASTG	3 cut(s)	334, 543, 1075
Van91I	CCANNNNNTGG	2 cut(s)	68, 441
Vha464I	CTTAAG	1 cut(s)	449
VpaK11BI	GGWCC	2 cut(s)	802, 946
VspI	ATTAAT	2 cut(s)	87, 258
XapI	RAATTY	1 cut(s)	292
XbaI	TCTAGA	1 cut(s)	392
XhoI	CTCGAG	1 cut(s)	866
XmaJI	CCTAGG	1 cut(s)	572
XmnI	GAANNNNTTC	1 cut(s)	353
XspI	CTAG	3 cut(s)	393, 567, 573
Zsp2I	ATGCAT	1 cut(s)	532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.