Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023232.1

Orthogroup ID

OG0005896

Physical Location & Seq

Genomic Coordinates Forward (+)

14 .. 391

Gene Structure 378 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023232.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

atggaggagtttcagagattgtggcttccgtttcctaaggttgaaagagatgacagtgtgaattttagtgttgcgattttttacagtgaagggtgtctatgtctatggcgttatggaagtcttgctgcctctagttctgttgatttttgggtcatggaaaggtatggagacaatgactcgtggaacatgctttatagctttaggatttccaacgagtctccgattaagtttctgaagccacttgtagttgcggagagtagtcaagttctggtgagatgttctactgctgcagagctggagttggtaaggatttgtggacaagaagaggaggagcgtggtacctatatgaatgaggccaagcaaatgttatggacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

125

Amino Acids

14.59

Weight (kDa)

4.6

Isoelectric Point (pI)

50.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005896)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18410 FvH4_1g18410
rosa_chinensis	RchiOBHm_Chr2g0109111
rosa_laevigata	RLG00000008160 RLG00000008316 RLG00000008418 RLG00000009006 RLG00000012163 RLG00000021316 RLG00000027390 RLG00000032253 RLG00000033851
rosa_multiflora	Rmu_sc0000186.1_g000009 Rmu_sc0000363.1_g000034 Rmu_sc0000820.1_g000019 Rmu_sc0006431.1_g000002 Rmu_sc0010364.1_g000003 Rmu_sc0023232.1_g000001 Rmu_ssc0000114.1_g000057
rosa_roxburghii	Rroxscaffold_2G00092820 Rroxscaffold_7G00189280
rosa_samantha	Rh2AG209000 Rh2AG289900 Rh2AG384200 Rh2BG219400 Rh4DG149700 Rh6AG171600 Rh7DG394000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	338
AccB1I	GGYRCC	1 cut(s)	338
AciI	CCGC	1 cut(s)	251
AcsI	RAATTY	1 cut(s)	61
AcuI	CTGAAG	1 cut(s)	254
AfaI	GTAC	1 cut(s)	340
AgsI	TTSAA	1 cut(s)	44
AluBI	AGCT	2 cut(s)	198, 295
AluI	AGCT	2 cut(s)	198, 295
Alw26I	GTCTC	2 cut(s)	162, 222
AoxI	GGCC	1 cut(s)	354
ApeKI	GCWGC	2 cut(s)	125, 287
ApoI	RAATTY	1 cut(s)	61
Asp718I	GGTACC	1 cut(s)	338
AsuHPI	GGTGA	1 cut(s)	283
AxyI	CCTNAGG	1 cut(s)	36
BanI	GGYRCC	1 cut(s)	338
BauI	CACGAG	1 cut(s)	178
BbvI	GCAGC	2 cut(s)	112, 274
BcoDI	GTCTC	2 cut(s)	162, 222
BfaI	CTAG	1 cut(s)	132
BfmI	CTRYAG	1 cut(s)	288
BisI	GCNGC	2 cut(s)	126, 288
BlsI	GCNGC	2 cut(s)	127, 289
BmiI	GGNNCC	1 cut(s)	340
BpmI	CTGGAG	1 cut(s)	317
Bse21I	CCTNAGG	1 cut(s)	36
BseRI	GAGGAG	3 cut(s)	20, 341, 344
BseXI	GCAGC	2 cut(s)	112, 274
BshFI	GGCC	1 cut(s)	356
BshNI	GGYRCC	1 cut(s)	338
BsmAI	GTCTC	2 cut(s)	162, 222
BsnI	GGCC	1 cut(s)	356
BspACI	CCGC	1 cut(s)	251
BspANI	GGCC	1 cut(s)	356
BspLI	GGNNCC	1 cut(s)	340
BspMAI	CTGCAG	1 cut(s)	292
BspT107I	GGYRCC	1 cut(s)	338
BssSI	CACGAG	1 cut(s)	178
Bst2BI	CACGAG	1 cut(s)	178
Bst4CI	ACNGT	2 cut(s)	56, 86
Bst6I	CTCTTC	1 cut(s)	318
BstDEI	CTNAG	1 cut(s)	36
BstMAI	GTCTC	2 cut(s)	162, 222
BstNSI	RCATGY	1 cut(s)	190
BstSFI	CTRYAG	1 cut(s)	288
BstV1I	GCAGC	2 cut(s)	112, 274
Bsu36I	CCTNAGG	1 cut(s)	36
BsuRI	GGCC	1 cut(s)	356
BtsIMutI	CAGTG	2 cut(s)	61, 91
Csp6I	GTAC	1 cut(s)	339
CviAII	CATG	3 cut(s)	154, 187, 375
CviJI	RGCY	5 cut(s)	25, 198, 238, 295, 356
CviKI_1	RGCY	5 cut(s)	25, 198, 238, 295, 356
CviQI	GTAC	1 cut(s)	339
DdeI	CTNAG	1 cut(s)	36
Eam1104I	CTCTTC	1 cut(s)	318
EarI	CTCTTC	1 cut(s)	318
Eco57I	CTGAAG	1 cut(s)	254
Eco81I	CCTNAGG	1 cut(s)	36
FaeI	CATG	3 cut(s)	157, 190, 378
FatI	CATG	3 cut(s)	153, 186, 374
Fnu4HI	GCNGC	2 cut(s)	126, 288
Fsp4HI	GCNGC	2 cut(s)	126, 288
FspBI	CTAG	1 cut(s)	132
GluI	GCNGC	2 cut(s)	126, 288
GsuI	CTGGAG	1 cut(s)	317
HaeIII	GGCC	1 cut(s)	356
Hin1II	CATG	3 cut(s)	157, 190, 378
HinfI	GANTC	2 cut(s)	176, 215
HphI	GGTGA	1 cut(s)	283
Hpy166II	GTNNAC	1 cut(s)	317
Hpy188I	TCNGA	3 cut(s)	15, 222, 234
Hpy8I	GTNNAC	1 cut(s)	317
HpyAV	CCTTC	1 cut(s)	83
HpyCH4III	ACNGT	2 cut(s)	56, 86
HpyCH4V	TGCA	1 cut(s)	290
HpyF3I	CTNAG	1 cut(s)	36
Hsp92II	CATG	3 cut(s)	157, 190, 378
KpnI	GGTACC	1 cut(s)	342
LmnI	GCTCC	1 cut(s)	331
LpnPI	CCDG	2 cut(s)	254, 281
Lsp1109I	GCAGC	2 cut(s)	112, 274
MaeI	CTAG	1 cut(s)	132
MboII	GAAGA	1 cut(s)	335
MluCI	AATT	1 cut(s)	61
MlyI	GAGTC	2 cut(s)	170, 224
MmeI	TCCRAC	1 cut(s)	234
MnlI	CCTC	4 cut(s)	139, 319, 322, 346
MseI	TTAA	1 cut(s)	225
NlaIII	CATG	3 cut(s)	157, 190, 378
NlaIV	GGNNCC	1 cut(s)	340
NspI	RCATGY	1 cut(s)	190
PkrI	GCNGC	2 cut(s)	127, 289
PleI	GAGTC	2 cut(s)	170, 223
PpsI	GAGTC	2 cut(s)	170, 223
PspN4I	GGNNCC	1 cut(s)	340
PstI	CTGCAG	1 cut(s)	292
RsaI	GTAC	1 cut(s)	340
RsaNI	GTAC	1 cut(s)	339
SaqAI	TTAA	1 cut(s)	225
SatI	GCNGC	2 cut(s)	126, 288
SchI	GAGTC	2 cut(s)	170, 224
SetI	ASST	5 cut(s)	42, 164, 200, 297, 344
SfcI	CTRYAG	1 cut(s)	288
Sse9I	AATT	1 cut(s)	61
SsiI	CCGC	1 cut(s)	251
SspMI	CTAG	1 cut(s)	132
TaaI	ACNGT	2 cut(s)	56, 86
TasI	AATT	1 cut(s)	61
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TscAI	CASTG	2 cut(s)	61, 91
TseI	GCWGC	2 cut(s)	125, 287
TspDTI	ATGAA	1 cut(s)	362
TspGWI	ACGGA	1 cut(s)	18
TspRI	CASTG	2 cut(s)	61, 91
XapI	RAATTY	1 cut(s)	61
XceI	RCATGY	1 cut(s)	190
XspI	CTAG	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.