Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0005896

Physical Location & Seq

Genomic Coordinates Reverse (-)

12617042 .. 12618917

Gene Structure 1876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032253

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGCGGTTCGACGGCGGTCTGGAGATACCGGCGGGGCAGAACACTTGGCGGTCCGGCGACGATGGCAGTGGTGGGGACGGGCCAGGCTTGGATGGCAGCTTATGGTCTTCCTTCGGAGACCGTATGGAGACAATGACTCGTGGAACATGCTTTATAGCTTTAGGATTTCCAACGAGTCTCCGATTAAGTTTCTGAAGCCACTTGTAGTTGCAGAGAGTAGTCAAGTTCTTGTGAGATGTTCTACTGCTACAGAGCTGGAGTTGGTAAGGATTCGTGGACAAGAAGAGGAGAAGCGTGGTACCTATATGAATGAGGCCGAGCAAATGTTATTGAAAGTCTGGAAAATAGAAAACTGGATCGATCGGGGTCGCCGGCTTCGGCACTCCGCCACCACCCCAAAGCCCTTGTGCCCGAAAGTCTCTGCTGCCCGGAACACATACTTCTCTATTTTTGGTCCCAAACACTCACACAAGGACCCATCAATGTTCAGACTTGCGAGCGCATTGAGCACGCAGAGCCTGCGTAGTGGGGGCAGGGTTATGACCAGCGGAGGCATAGTGAAGGGATTGCTAATCACCTTTTCGGAGCATTCTTCGTCGAAGAAAGTGAGTGCGCGCATGTGTCCCGTCTTTGTTGTAGGTTTGGAGATGGACTTGGTACCAATGGCACATGCGAATTTGGAGAGTGGCTGCCGGTTTCCCAGTTGGGTTGTCGTAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

241

Amino Acids

27.31

Weight (kDa)

10.41

Isoelectric Point (pI)

54.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005896)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18410 FvH4_1g18410
rosa_chinensis	RchiOBHm_Chr2g0109111
rosa_laevigata	RLG00000008160 RLG00000008316 RLG00000008418 RLG00000009006 RLG00000012163 RLG00000021316 RLG00000027390 RLG00000032253 RLG00000033851
rosa_multiflora	Rmu_sc0000186.1_g000009 Rmu_sc0000363.1_g000034 Rmu_sc0000820.1_g000019 Rmu_sc0006431.1_g000002 Rmu_sc0010364.1_g000003 Rmu_sc0023232.1_g000001 Rmu_ssc0000114.1_g000057
rosa_roxburghii	Rroxscaffold_2G00092820 Rroxscaffold_7G00189280
rosa_samantha	Rh2AG209000 Rh2AG289900 Rh2AG384200 Rh2BG219400 Rh4DG149700 Rh6AG171600 Rh7DG394000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	299, 658
AccB1I	GGYRCC	2 cut(s)	299, 658
AccII	CGCG	1 cut(s)	616
AciI	CCGC	6 cut(s)	5, 16, 33, 50, 387, 549
AclWI	GGATC	1 cut(s)	365
AcsI	RAATTY	1 cut(s)	676
AcuI	CTGAAG	1 cut(s)	215
AfaI	GTAC	2 cut(s)	301, 660
AgsI	TTSAA	1 cut(s)	334
AjnI	CCWGG	1 cut(s)	83
AluBI	AGCT	3 cut(s)	100, 159, 256
AluI	AGCT	3 cut(s)	100, 159, 256
Alw21I	GWGCWC	1 cut(s)	512
Alw26I	GTCTC	4 cut(s)	112, 123, 183, 424
AlwI	GGATC	1 cut(s)	365
AlwNI	CAGNNNCTG	1 cut(s)	520
AoxI	GGCC	2 cut(s)	81, 315
ApeKI	GCWGC	3 cut(s)	97, 425, 690
ApoI	RAATTY	1 cut(s)	676
Asp718I	GGTACC	2 cut(s)	299, 658
AspLEI	GCGC	3 cut(s)	503, 616, 618
AspS9I	GGNCC	4 cut(s)	52, 81, 455, 475
AsuC2I	CCSGG	1 cut(s)	430
AsuHPI	GGTGA	1 cut(s)	568
AvaII	GGWCC	3 cut(s)	52, 455, 475
BaeGI	GKGCMC	1 cut(s)	413
BanI	GGYRCC	2 cut(s)	299, 658
BauI	CACGAG	1 cut(s)	139
BbsI	GAAGAC	1 cut(s)	100
Bbv12I	GWGCWC	1 cut(s)	512
BbvI	GCAGC	3 cut(s)	109, 412, 677
BccI	CCATC	4 cut(s)	57, 87, 487, 643
BceAI	ACGGC	1 cut(s)	29
BciT130I	CCWGG	1 cut(s)	85
BcnI	CCSGG	1 cut(s)	430
BcoDI	GTCTC	4 cut(s)	112, 123, 183, 424
BfmI	CTRYAG	1 cut(s)	249
BisI	GCNGC	3 cut(s)	98, 426, 691
BlsI	GCNGC	3 cut(s)	99, 427, 692
Bme1390I	CCNGG	2 cut(s)	85, 430
Bme18I	GGWCC	3 cut(s)	52, 455, 475
BmgT120I	GGNCC	4 cut(s)	52, 81, 455, 475
BmiI	GGNNCC	4 cut(s)	301, 457, 477, 660
BmrFI	CCNGG	2 cut(s)	85, 430
BmrI	ACTGGG	1 cut(s)	696
BmuI	ACTGGG	1 cut(s)	696
BoxI	GACNNNNGTC	1 cut(s)	16
BpiI	GAAGAC	1 cut(s)	100
BpmI	CTGGAG	2 cut(s)	42, 278
BpuMI	CCSGG	1 cut(s)	430
Bsa29I	ATCGAT	1 cut(s)	360
BsaI	GGTCTC	1 cut(s)	112
BsaXI	ACNNNNNCTCC	2 cut(s)	543, 573
Bse118I	RCCGGY	3 cut(s)	29, 372, 693
Bse1I	ACTGG	2 cut(s)	359, 702
BseBI	CCWGG	1 cut(s)	85
BseCI	ATCGAT	1 cut(s)	360
BseGI	GGATG	1 cut(s)	98
BseNI	ACTGG	2 cut(s)	359, 702
BsePI	GCGCGC	1 cut(s)	614
BseRI	GAGGAG	1 cut(s)	302
BseSI	GKGCMC	1 cut(s)	413
BseXI	GCAGC	3 cut(s)	109, 412, 677
Bsh1236I	CGCG	1 cut(s)	616
Bsh1285I	CGRYCG	1 cut(s)	364
BshFI	GGCC	2 cut(s)	83, 317
BshNI	GGYRCC	2 cut(s)	299, 658
BshVI	ATCGAT	1 cut(s)	360
BsiEI	CGRYCG	1 cut(s)	364
BsiHKAI	GWGCWC	1 cut(s)	512
BsiSI	CCGG	5 cut(s)	30, 55, 373, 430, 694
BslFI	GGGAC	3 cut(s)	90, 441, 609
BsmAI	GTCTC	4 cut(s)	112, 123, 183, 424
BsmFI	GGGAC	3 cut(s)	90, 441, 609
BsmI	GAATGC	1 cut(s)	589
BsnI	GGCC	2 cut(s)	83, 317
Bso31I	GGTCTC	1 cut(s)	112
Bsp1286I	GDGCHC	2 cut(s)	413, 512
Bsp143I	GATC	2 cut(s)	357, 361
BspACI	CCGC	6 cut(s)	5, 16, 33, 50, 387, 549
BspANI	GGCC	2 cut(s)	83, 317
BspDI	ATCGAT	1 cut(s)	360
BspFNI	CGCG	1 cut(s)	616
BspLI	GGNNCC	4 cut(s)	301, 457, 477, 660
BspPI	GGATC	1 cut(s)	365
BspT107I	GGYRCC	2 cut(s)	299, 658
BspTNI	GGTCTC	1 cut(s)	112
BsrFI	RCCGGY	3 cut(s)	29, 372, 693
BsrI	ACTGG	2 cut(s)	359, 702
BssAI	RCCGGY	3 cut(s)	29, 372, 693
BssHII	GCGCGC	1 cut(s)	614
BssMI	GATC	2 cut(s)	357, 361
BssSI	CACGAG	1 cut(s)	139
Bst2BI	CACGAG	1 cut(s)	139
Bst2UI	CCWGG	1 cut(s)	85
Bst4CI	ACNGT	1 cut(s)	123
Bst6I	CTCTTC	1 cut(s)	279
BstAPI	GCANNNNNTGC	1 cut(s)	520
BstC8I	GCNNGC	5 cut(s)	374, 499, 512, 521, 616
BstF5I	GGATG	1 cut(s)	98
BstFNI	CGCG	1 cut(s)	616
BstHHI	GCGC	3 cut(s)	503, 616, 618
BstKTI	GATC	2 cut(s)	360, 364
BstMAI	GTCTC	4 cut(s)	112, 123, 183, 424
BstMBI	GATC	2 cut(s)	357, 361
BstMCI	CGRYCG	1 cut(s)	364
BstMWI	GCNNNNNNNGC	5 cut(s)	64, 94, 507, 516, 520
BstNI	CCWGG	1 cut(s)	85
BstNSI	RCATGY	3 cut(s)	151, 622, 674
BstPAI	GACNNNNGTC	1 cut(s)	16
BstSCI	CCNGG	2 cut(s)	83, 428
BstSFI	CTRYAG	1 cut(s)	249
BstSLI	GKGCMC	1 cut(s)	413
BstUI	CGCG	1 cut(s)	616
BstV1I	GCAGC	3 cut(s)	109, 412, 677
BstV2I	GAAGAC	1 cut(s)	100
Bsu15I	ATCGAT	1 cut(s)	360
BsuRI	GGCC	2 cut(s)	83, 317
BsuTUI	ATCGAT	1 cut(s)	360
BtsCI	GGATG	1 cut(s)	98
BtsI	GCAGTG	1 cut(s)	74
BtsIMutI	CAGTG	1 cut(s)	74
Cac8I	GCNNGC	5 cut(s)	374, 499, 512, 521, 616
CaiI	CAGNNNCTG	1 cut(s)	520
CfoI	GCGC	3 cut(s)	503, 616, 618
Cfr10I	RCCGGY	3 cut(s)	29, 372, 693
Cfr13I	GGNCC	4 cut(s)	52, 81, 455, 475
ClaI	ATCGAT	1 cut(s)	360
CpoI	CGGWCCG	1 cut(s)	52
Csp6I	GTAC	2 cut(s)	300, 659
CspI	CGGWCCG	1 cut(s)	52
CviAII	CATG	3 cut(s)	148, 619, 671
CviQI	GTAC	2 cut(s)	300, 659
DpnI	GATC	2 cut(s)	359, 363
DpnII	GATC	2 cut(s)	357, 361
Eam1104I	CTCTTC	1 cut(s)	279
EarI	CTCTTC	1 cut(s)	279
EciI	GGCGGA	1 cut(s)	376
Eco31I	GGTCTC	1 cut(s)	112
Eco47I	GGWCC	3 cut(s)	52, 455, 475
Eco57I	CTGAAG	1 cut(s)	215
EcoO109I	RGGNCCY	1 cut(s)	475
EcoRII	CCWGG	1 cut(s)	83
FaeI	CATG	3 cut(s)	151, 622, 674
FaqI	GGGAC	3 cut(s)	90, 441, 609
FatI	CATG	3 cut(s)	147, 618, 670
FauI	CCCGC	1 cut(s)	26
Fnu4HI	GCNGC	3 cut(s)	98, 426, 691
FokI	GGATG	1 cut(s)	105
Fsp4HI	GCNGC	3 cut(s)	98, 426, 691
GlaI	GCGC	3 cut(s)	502, 615, 617
GluI	GCNGC	3 cut(s)	98, 426, 691
GsuI	CTGGAG	2 cut(s)	42, 278
HaeIII	GGCC	2 cut(s)	83, 317
HapII	CCGG	5 cut(s)	30, 55, 373, 430, 694
HhaI	GCGC	3 cut(s)	503, 616, 618
Hin1II	CATG	3 cut(s)	151, 622, 674
Hin6I	GCGC	3 cut(s)	501, 614, 616
HinP1I	GCGC	3 cut(s)	501, 614, 616
HinfI	GANTC	3 cut(s)	137, 176, 271
HpaII	CCGG	5 cut(s)	30, 55, 373, 430, 694
HphI	GGTGA	1 cut(s)	568
Hpy166II	GTNNAC	1 cut(s)	278
Hpy188I	TCNGA	5 cut(s)	117, 183, 195, 491, 586
Hpy188III	TCNNGA	2 cut(s)	21, 340
Hpy8I	GTNNAC	1 cut(s)	278
Hpy99I	CGWCG	3 cut(s)	15, 63, 601
HpyAV	CCTTC	2 cut(s)	122, 556
HpyCH4III	ACNGT	1 cut(s)	123
HpyCH4V	TGCA	1 cut(s)	212
HpyF10VI	GCNNNNNNNGC	5 cut(s)	64, 94, 507, 516, 520
Hsp92II	CATG	3 cut(s)	151, 622, 674
HspAI	GCGC	3 cut(s)	501, 614, 616
KpnI	GGTACC	2 cut(s)	303, 662
KroI	GCCGGC	1 cut(s)	372
KroNI	GCCGGC	1 cut(s)	374
Kzo9I	GATC	2 cut(s)	357, 361
LmnI	GCTCC	1 cut(s)	586
Lsp1109I	GCAGC	3 cut(s)	109, 412, 677
MalI	GATC	2 cut(s)	359, 363
MboI	GATC	2 cut(s)	357, 361
MboII	GAAGA	4 cut(s)	100, 296, 585, 613
MhlI	GDGCHC	2 cut(s)	413, 512
MluCI	AATT	1 cut(s)	676
MlyI	GAGTC	2 cut(s)	131, 185
MmeI	TCCRAC	1 cut(s)	195
MnlI	CCTC	3 cut(s)	280, 307, 545
MroNI	GCCGGC	1 cut(s)	372
MseI	TTAA	2 cut(s)	186, 721
MspA1I	CMGCKG	1 cut(s)	549
MspI	CCGG	5 cut(s)	30, 55, 373, 430, 694
MspR9I	CCNGG	2 cut(s)	85, 430
Mva1269I	GAATGC	1 cut(s)	589
MvaI	CCWGG	1 cut(s)	85
MvnI	CGCG	1 cut(s)	616
MwoI	GCNNNNNNNGC	5 cut(s)	64, 94, 507, 516, 520
NaeI	GCCGGC	1 cut(s)	374
NciI	CCSGG	1 cut(s)	430
NdeII	GATC	2 cut(s)	357, 361
NgoMIV	GCCGGC	1 cut(s)	372
NlaIII	CATG	3 cut(s)	151, 622, 674
NlaIV	GGNNCC	4 cut(s)	301, 457, 477, 660
NmeAIII	GCCGAG	1 cut(s)	343
NspI	RCATGY	3 cut(s)	151, 622, 674
PauI	GCGCGC	1 cut(s)	614
PctI	GAATGC	1 cut(s)	589
PdiI	GCCGGC	1 cut(s)	374
PfeI	GAWTC	1 cut(s)	271
PkrI	GCNGC	3 cut(s)	99, 427, 692
Ple19I	CGATCG	1 cut(s)	364
PleI	GAGTC	2 cut(s)	131, 184
PpsI	GAGTC	2 cut(s)	131, 184
PpuMI	RGGWCCY	1 cut(s)	475
PshAI	GACNNNNGTC	1 cut(s)	16
Psp5II	RGGWCCY	1 cut(s)	475
Psp6I	CCWGG	1 cut(s)	83
PspGI	CCWGG	1 cut(s)	83
PspN4I	GGNNCC	4 cut(s)	301, 457, 477, 660
PspPI	GGNCC	4 cut(s)	52, 81, 455, 475
PspPPI	RGGWCCY	1 cut(s)	475
PstNI	CAGNNNCTG	1 cut(s)	520
PteI	GCGCGC	1 cut(s)	614
PvuI	CGATCG	1 cut(s)	364
RsaI	GTAC	2 cut(s)	301, 660
RsaNI	GTAC	2 cut(s)	300, 659
Rsr2I	CGGWCCG	1 cut(s)	52
RsrII	CGGWCCG	1 cut(s)	52
SaqAI	TTAA	2 cut(s)	186, 721
SatI	GCNGC	3 cut(s)	98, 426, 691
Sau3AI	GATC	2 cut(s)	357, 361
Sau96I	GGNCC	4 cut(s)	52, 81, 455, 475
SchI	GAGTC	2 cut(s)	131, 185
ScrFI	CCNGG	2 cut(s)	85, 430
SduI	GDGCHC	2 cut(s)	413, 512
SetI	ASST	6 cut(s)	102, 161, 258, 305, 581, 643
SfcI	CTRYAG	1 cut(s)	249
SinI	GGWCC	3 cut(s)	52, 455, 475
Sse9I	AATT	1 cut(s)	676
SsiI	CCGC	6 cut(s)	5, 16, 33, 50, 387, 549
StyD4I	CCNGG	2 cut(s)	83, 428
TaaI	ACNGT	1 cut(s)	123
TaqI	TCGA	3 cut(s)	10, 360, 599
TasI	AATT	1 cut(s)	676
TfiI	GAWTC	1 cut(s)	271
Tru1I	TTAA	2 cut(s)	186, 721
Tru9I	TTAA	2 cut(s)	186, 721
TscAI	CASTG	1 cut(s)	74
TseI	GCWGC	3 cut(s)	97, 425, 690
TspDTI	ATGAA	1 cut(s)	323
TspRI	CASTG	1 cut(s)	74
VpaK11BI	GGWCC	3 cut(s)	52, 455, 475
XapI	RAATTY	1 cut(s)	676
XceI	RCATGY	3 cut(s)	151, 622, 674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.