RLG00000027390

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0005896
Physical Location & Seq
Reverse (-)
11166387 .. 11167394
1008 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027390

Sequence Viewer

Length: 507 bp
ATGGCAGTGGTGGGGACGGGCCAGGCTTGGATGGCAGCTTATGGTCTTCCTTCGGAGACCGTACTTCGCCGTAAAGCTCGCCCTTTAACCCGACCGGACTGCGACGTCTTGCTATTGGGCTCCTGCAATGGGCTCCAACTTCCGGTGAACGATGTTTCTCCCAAAAAGAAGACCGGCGAAAGAACGTGTTCAAGTTCGAGCATAGATTTGCAGCCACAATTATGTATTGCTCGATGTGAAAGGTATGGAGACAATGACTCGTGGAACATGCTTTATAGCTTTAGGATTTCCAACGAGTCTCCGATTAAGTTTCTGAAGCCACTTGTAGTTGCAGAGAGTAGTCAAGTTCTTGTGAGATGTTCTACTGCTACAGAGCTGGAGTTGGTAAGGATTCGTGGACAAGAAGAGGAGAAGCGTGGTACCTATATGAATGAGGCCGAGCAAATGTTATTGAAAGTCTGGAAAATAGAAAACTGGATCGATCGTGGTCGCCGGCTTCGGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

169

Amino Acids

19.09

Weight (kDa)

8.97

Isoelectric Point (pI)

58.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 104
AatII GACGTC 1 cut(s) 108
Acc65I GGTACC 1 cut(s) 419
AccB1I GGYRCC 1 cut(s) 419
AclWI GGATC 1 cut(s) 485
AcuI CTGAAG 1 cut(s) 335
AcyI GRCGYC 1 cut(s) 105
AfaI GTAC 2 cut(s) 63, 421
AfiI CCNNNNNNNGG 2 cut(s) 129, 142
AflIII ACRYGT 1 cut(s) 185
AgsI TTSAA 2 cut(s) 192, 454
AjnI CCWGG 1 cut(s) 21
AluBI AGCT 4 cut(s) 38, 77, 279, 376
AluI AGCT 4 cut(s) 38, 77, 279, 376
Alw26I GTCTC 3 cut(s) 50, 243, 303
AlwI GGATC 1 cut(s) 485
AoxI GGCC 2 cut(s) 19, 435
ApeKI GCWGC 2 cut(s) 35, 211
Asp700I GAANNNNTTC 1 cut(s) 187
Asp718I GGTACC 1 cut(s) 419
AspS9I GGNCC 1 cut(s) 19
AsuHPI GGTGA 1 cut(s) 157
BanI GGYRCC 1 cut(s) 419
BanII GRGCYC 2 cut(s) 122, 135
BauI CACGAG 1 cut(s) 259
BbsI GAAGAC 2 cut(s) 38, 176
BbvI GCAGC 2 cut(s) 47, 223
BccI CCATC 1 cut(s) 25
BceAI ACGGC 1 cut(s) 54
BcgI CGANNNNNNTGC 2 cut(s) 81, 115
BciT130I CCWGG 1 cut(s) 23
BcoDI GTCTC 3 cut(s) 50, 243, 303
BfmI CTRYAG 1 cut(s) 369
BisI GCNGC 2 cut(s) 36, 212
BlsI GCNGC 2 cut(s) 37, 213
Bme1390I CCNGG 1 cut(s) 23
BmgT120I GGNCC 1 cut(s) 19
BmiI GGNNCC 3 cut(s) 121, 134, 421
BmrFI CCNGG 1 cut(s) 23
BpiI GAAGAC 2 cut(s) 38, 176
BpmI CTGGAG 1 cut(s) 398
Bsa29I ATCGAT 1 cut(s) 480
BsaHI GRCGYC 1 cut(s) 105
BsaI GGTCTC 1 cut(s) 50
BsaWI WCCGGW 2 cut(s) 94, 142
Bsc4I CCNNNNNNNGG 2 cut(s) 129, 142
Bse118I RCCGGY 2 cut(s) 173, 492
Bse1I ACTGG 1 cut(s) 479
Bse3DI GCAATG 1 cut(s) 133
BseBI CCWGG 1 cut(s) 23
BseCI ATCGAT 1 cut(s) 480
BseGI GGATG 1 cut(s) 36
BseLI CCNNNNNNNGG 2 cut(s) 129, 142
BseMI GCAATG 1 cut(s) 133
BseNI ACTGG 1 cut(s) 479
BseRI GAGGAG 1 cut(s) 422
BseXI GCAGC 2 cut(s) 47, 223
Bsh1285I CGRYCG 2 cut(s) 95, 484
BshFI GGCC 2 cut(s) 21, 437
BshNI GGYRCC 1 cut(s) 419
BshVI ATCGAT 1 cut(s) 480
BsiEI CGRYCG 2 cut(s) 95, 484
BsiSI CCGG 4 cut(s) 95, 143, 174, 493
BslFI GGGAC 1 cut(s) 28
BslI CCNNNNNNNGG 2 cut(s) 129, 142
BsmAI GTCTC 3 cut(s) 50, 243, 303
BsmFI GGGAC 1 cut(s) 28
BsnI GGCC 2 cut(s) 21, 437
Bso31I GGTCTC 1 cut(s) 50
Bsp1286I GDGCHC 2 cut(s) 122, 135
Bsp143I GATC 2 cut(s) 477, 481
BspANI GGCC 2 cut(s) 21, 437
BspDI ATCGAT 1 cut(s) 480
BspLI GGNNCC 3 cut(s) 121, 134, 421
BspPI GGATC 1 cut(s) 485
BspT107I GGYRCC 1 cut(s) 419
BspTNI GGTCTC 1 cut(s) 50
BsrDI GCAATG 1 cut(s) 133
BsrFI RCCGGY 2 cut(s) 173, 492
BsrI ACTGG 1 cut(s) 479
BssAI RCCGGY 2 cut(s) 173, 492
BssMI GATC 2 cut(s) 477, 481
BssNI GRCGYC 1 cut(s) 105
BssSI CACGAG 1 cut(s) 259
Bst2BI CACGAG 1 cut(s) 259
Bst2UI CCWGG 1 cut(s) 23
Bst4CI ACNGT 1 cut(s) 61
Bst6I CTCTTC 1 cut(s) 399
BstACI GRCGYC 1 cut(s) 105
BstC8I GCNNGC 2 cut(s) 79, 494
BstF5I GGATG 1 cut(s) 36
BstKTI GATC 2 cut(s) 480, 484
BstMAI GTCTC 3 cut(s) 50, 243, 303
BstMBI GATC 2 cut(s) 477, 481
BstMCI CGRYCG 2 cut(s) 95, 484
BstMWI GCNNNNNNNGC 1 cut(s) 32
BstNI CCWGG 1 cut(s) 23
BstNSI RCATGY 1 cut(s) 271
BstSCI CCNGG 1 cut(s) 21
BstSFI CTRYAG 1 cut(s) 369
BstV1I GCAGC 2 cut(s) 47, 223
BstV2I GAAGAC 2 cut(s) 38, 176
Bsu15I ATCGAT 1 cut(s) 480
BsuRI GGCC 2 cut(s) 21, 437
BsuTUI ATCGAT 1 cut(s) 480
BtsCI GGATG 1 cut(s) 36
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 1 cut(s) 12
Cac8I GCNNGC 2 cut(s) 79, 494
Cfr10I RCCGGY 2 cut(s) 173, 492
Cfr13I GGNCC 1 cut(s) 19
ClaI ATCGAT 1 cut(s) 480
Csp6I GTAC 2 cut(s) 62, 420
CviAII CATG 1 cut(s) 268
CviQI GTAC 2 cut(s) 62, 420
DpnI GATC 2 cut(s) 479, 483
DpnII GATC 2 cut(s) 477, 481
DrdI GACNNNNNNGTC 1 cut(s) 104
DseDI GACNNNNNNGTC 1 cut(s) 104
Eam1104I CTCTTC 1 cut(s) 399
EarI CTCTTC 1 cut(s) 399
Eco24I GRGCYC 2 cut(s) 122, 135
Eco31I GGTCTC 1 cut(s) 50
Eco57I CTGAAG 1 cut(s) 335
EcoRII CCWGG 1 cut(s) 21
EcoT38I GRGCYC 2 cut(s) 122, 135
FaeI CATG 1 cut(s) 271
FaiI YATR 8 cut(s) 42, 203, 223, 246, 269, 276, 426, 428
FaqI GGGAC 1 cut(s) 28
FatI CATG 1 cut(s) 267
Fnu4HI GCNGC 2 cut(s) 36, 212
FokI GGATG 1 cut(s) 43
FriOI GRGCYC 2 cut(s) 122, 135
Fsp4HI GCNGC 2 cut(s) 36, 212
GluI GCNGC 2 cut(s) 36, 212
GsuI CTGGAG 1 cut(s) 398
HaeIII GGCC 2 cut(s) 21, 437
HapII CCGG 4 cut(s) 95, 143, 174, 493
Hin1I GRCGYC 1 cut(s) 105
Hin1II CATG 1 cut(s) 271
HinfI GANTC 3 cut(s) 257, 296, 391
HpaII CCGG 4 cut(s) 95, 143, 174, 493
HphI GGTGA 1 cut(s) 157
Hpy166II GTNNAC 2 cut(s) 148, 398
Hpy188I TCNGA 3 cut(s) 55, 303, 315
Hpy188III TCNNGA 1 cut(s) 460
Hpy8I GTNNAC 2 cut(s) 148, 398
Hpy99I CGWCG 1 cut(s) 107
HpyAV CCTTC 1 cut(s) 60
HpyCH4III ACNGT 1 cut(s) 61
HpyCH4IV ACGT 2 cut(s) 105, 185
HpyCH4V TGCA 3 cut(s) 126, 211, 332
HpyF10VI GCNNNNNNNGC 1 cut(s) 32
HpySE526I ACGT 2 cut(s) 105, 185
Hsp92I GRCGYC 1 cut(s) 105
Hsp92II CATG 1 cut(s) 271
KpnI GGTACC 1 cut(s) 423
KroI GCCGGC 1 cut(s) 492
KroNI GCCGGC 1 cut(s) 494
Kzo9I GATC 2 cut(s) 477, 481
LmnI GCTCC 2 cut(s) 125, 138
LpnPI CCDG 9 cut(s) 8, 35, 108, 136, 156, 187, 362, 445, 460
Lsp1109I GCAGC 2 cut(s) 47, 223
MaeII ACGT 2 cut(s) 105, 185
MalI GATC 2 cut(s) 479, 483
MboI GATC 2 cut(s) 477, 481
MboII GAAGA 3 cut(s) 38, 181, 416
MhlI GDGCHC 2 cut(s) 122, 135
MluCI AATT 1 cut(s) 218
MlyI GAGTC 2 cut(s) 251, 305
MmeI TCCRAC 2 cut(s) 160, 315
MnlI CCTC 2 cut(s) 400, 427
MroNI GCCGGC 1 cut(s) 492
MroXI GAANNNNTTC 1 cut(s) 187
MseI TTAA 2 cut(s) 86, 306
MslI CAYNNNNRTG 1 cut(s) 220
MspI CCGG 4 cut(s) 95, 143, 174, 493
MspR9I CCNGG 1 cut(s) 23
MvaI CCWGG 1 cut(s) 23
MwoI GCNNNNNNNGC 1 cut(s) 32
NaeI GCCGGC 1 cut(s) 494
NdeII GATC 2 cut(s) 477, 481
NgoMIV GCCGGC 1 cut(s) 492
NlaIII CATG 1 cut(s) 271
NlaIV GGNNCC 3 cut(s) 121, 134, 421
NmeAIII GCCGAG 1 cut(s) 463
NspI RCATGY 1 cut(s) 271
PdiI GCCGGC 1 cut(s) 494
PdmI GAANNNNTTC 1 cut(s) 187
PfeI GAWTC 1 cut(s) 391
PkrI GCNGC 2 cut(s) 37, 213
Ple19I CGATCG 1 cut(s) 484
PleI GAGTC 2 cut(s) 251, 304
PpsI GAGTC 2 cut(s) 251, 304
Psp6I CCWGG 1 cut(s) 21
PspGI CCWGG 1 cut(s) 21
PspN4I GGNNCC 3 cut(s) 121, 134, 421
PspPI GGNCC 1 cut(s) 19
PvuI CGATCG 1 cut(s) 484
RsaI GTAC 2 cut(s) 63, 421
RsaNI GTAC 2 cut(s) 62, 420
RseI CAYNNNNRTG 1 cut(s) 220
SaqAI TTAA 2 cut(s) 86, 306
SatI GCNGC 2 cut(s) 36, 212
Sau3AI GATC 2 cut(s) 477, 481
Sau96I GGNCC 1 cut(s) 19
SchI GAGTC 2 cut(s) 251, 305
ScrFI CCNGG 1 cut(s) 23
SduI GDGCHC 2 cut(s) 122, 135
SetI ASST 8 cut(s) 40, 79, 108, 188, 245, 281, 378, 425
SfcI CTRYAG 1 cut(s) 369
SmiMI CAYNNNNRTG 1 cut(s) 220
Sse9I AATT 1 cut(s) 218
StyD4I CCNGG 1 cut(s) 21
TaaI ACNGT 1 cut(s) 61
TaiI ACGT 2 cut(s) 108, 188
TaqI TCGA 3 cut(s) 197, 232, 480
TasI AATT 1 cut(s) 218
TfiI GAWTC 1 cut(s) 391
Tru1I TTAA 2 cut(s) 86, 306
Tru9I TTAA 2 cut(s) 86, 306
TscAI CASTG 1 cut(s) 12
TseI GCWGC 2 cut(s) 35, 211
TspDTI ATGAA 1 cut(s) 443
TspRI CASTG 1 cut(s) 12
XceI RCATGY 1 cut(s) 271
XmnI GAANNNNTTC 1 cut(s) 187
ZraI GACGTC 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.