Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0005896

Physical Location & Seq

Genomic Coordinates Forward (+)

27792739 .. 27793011

Gene Structure 273 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG171600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGAAAGGTATGGAGACAATGACTCGTGGAACATGCTTTATAGCTTTAGGATTTCCAACGAGTCTCCGATTAAGTTTCTGAAGCCACTTGTAGTTGCAGAGAGTAGTCAAGTTCTTGTGAGATGTTCTACTGCTGCAGAGCTGGAGTTGGTAAGGATTCGTGGACAAGAAGAGGAGAAGTGTGGTACCTATATGAATGAGGCCGAGCAAATGTTATTGAAAGTCTGGAAAATAGAAAACTGGATCGATCGGGGTCGCCGACTTCGGCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

90

Amino Acids

10.71

Weight (kDa)

7.76

Isoelectric Point (pI)

50.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005896)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18410 FvH4_1g18410
rosa_chinensis	RchiOBHm_Chr2g0109111
rosa_laevigata	RLG00000008160 RLG00000008316 RLG00000008418 RLG00000009006 RLG00000012163 RLG00000021316 RLG00000027390 RLG00000032253 RLG00000033851
rosa_multiflora	Rmu_sc0000186.1_g000009 Rmu_sc0000363.1_g000034 Rmu_sc0000820.1_g000019 Rmu_sc0006431.1_g000002 Rmu_sc0010364.1_g000003 Rmu_sc0023232.1_g000001 Rmu_ssc0000114.1_g000057
rosa_roxburghii	Rroxscaffold_2G00092820 Rroxscaffold_7G00189280
rosa_samantha	Rh2AG209000 Rh2AG289900 Rh2AG384200 Rh2BG219400 Rh4DG149700 Rh6AG171600 Rh7DG394000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	185
AccB1I	GGYRCC	1 cut(s)	185
AciI	CCGC	1 cut(s)	268
AclWI	GGATC	1 cut(s)	251
AcuI	CTGAAG	1 cut(s)	101
AfaI	GTAC	1 cut(s)	187
AgsI	TTSAA	1 cut(s)	220
AluBI	AGCT	2 cut(s)	45, 142
AluI	AGCT	2 cut(s)	45, 142
Alw26I	GTCTC	2 cut(s)	9, 69
AlwI	GGATC	1 cut(s)	251
AoxI	GGCC	1 cut(s)	201
ApeKI	GCWGC	1 cut(s)	134
Asp718I	GGTACC	1 cut(s)	185
BanI	GGYRCC	1 cut(s)	185
BauI	CACGAG	1 cut(s)	25
BbvI	GCAGC	1 cut(s)	121
BcoDI	GTCTC	2 cut(s)	9, 69
BfmI	CTRYAG	1 cut(s)	135
BisI	GCNGC	1 cut(s)	135
BlsI	GCNGC	1 cut(s)	136
BmiI	GGNNCC	1 cut(s)	187
BpmI	CTGGAG	1 cut(s)	164
Bsa29I	ATCGAT	1 cut(s)	246
Bse1I	ACTGG	1 cut(s)	245
BseCI	ATCGAT	1 cut(s)	246
BseNI	ACTGG	1 cut(s)	245
BseRI	GAGGAG	1 cut(s)	188
BseXI	GCAGC	1 cut(s)	121
Bsh1285I	CGRYCG	1 cut(s)	250
BshFI	GGCC	1 cut(s)	203
BshNI	GGYRCC	1 cut(s)	185
BshVI	ATCGAT	1 cut(s)	246
BsiEI	CGRYCG	1 cut(s)	250
BsmAI	GTCTC	2 cut(s)	9, 69
BsnI	GGCC	1 cut(s)	203
Bsp143I	GATC	2 cut(s)	243, 247
BspACI	CCGC	1 cut(s)	268
BspANI	GGCC	1 cut(s)	203
BspDI	ATCGAT	1 cut(s)	246
BspLI	GGNNCC	1 cut(s)	187
BspMAI	CTGCAG	1 cut(s)	139
BspPI	GGATC	1 cut(s)	251
BspT107I	GGYRCC	1 cut(s)	185
BsrI	ACTGG	1 cut(s)	245
BssMI	GATC	2 cut(s)	243, 247
BssSI	CACGAG	1 cut(s)	25
Bst2BI	CACGAG	1 cut(s)	25
Bst6I	CTCTTC	1 cut(s)	165
BstKTI	GATC	2 cut(s)	246, 250
BstMAI	GTCTC	2 cut(s)	9, 69
BstMBI	GATC	2 cut(s)	243, 247
BstMCI	CGRYCG	1 cut(s)	250
BstNSI	RCATGY	1 cut(s)	37
BstSFI	CTRYAG	1 cut(s)	135
BstV1I	GCAGC	1 cut(s)	121
Bsu15I	ATCGAT	1 cut(s)	246
BsuRI	GGCC	1 cut(s)	203
BsuTUI	ATCGAT	1 cut(s)	246
ClaI	ATCGAT	1 cut(s)	246
Csp6I	GTAC	1 cut(s)	186
CviAII	CATG	1 cut(s)	34
CviJI	RGCY	4 cut(s)	45, 85, 142, 203
CviKI_1	RGCY	4 cut(s)	45, 85, 142, 203
CviQI	GTAC	1 cut(s)	186
DpnI	GATC	2 cut(s)	245, 249
DpnII	GATC	2 cut(s)	243, 247
Eam1104I	CTCTTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	165
Eco57I	CTGAAG	1 cut(s)	101
FaeI	CATG	1 cut(s)	37
FaiI	YATR	5 cut(s)	12, 35, 42, 192, 194
FatI	CATG	1 cut(s)	33
Fnu4HI	GCNGC	1 cut(s)	135
Fsp4HI	GCNGC	1 cut(s)	135
GluI	GCNGC	1 cut(s)	135
GsuI	CTGGAG	1 cut(s)	164
HaeIII	GGCC	1 cut(s)	203
Hin1II	CATG	1 cut(s)	37
HinfI	GANTC	3 cut(s)	23, 62, 157
Hpy166II	GTNNAC	1 cut(s)	164
Hpy188I	TCNGA	2 cut(s)	69, 81
Hpy188III	TCNNGA	1 cut(s)	226
Hpy8I	GTNNAC	1 cut(s)	164
HpyCH4V	TGCA	2 cut(s)	98, 137
Hsp92II	CATG	1 cut(s)	37
KpnI	GGTACC	1 cut(s)	189
Kzo9I	GATC	2 cut(s)	243, 247
LpnPI	CCDG	3 cut(s)	128, 211, 226
Lsp1109I	GCAGC	1 cut(s)	121
MalI	GATC	2 cut(s)	245, 249
MboI	GATC	2 cut(s)	243, 247
MboII	GAAGA	1 cut(s)	182
MlyI	GAGTC	2 cut(s)	17, 71
MmeI	TCCRAC	1 cut(s)	81
MnlI	CCTC	2 cut(s)	166, 193
MseI	TTAA	1 cut(s)	72
NdeII	GATC	2 cut(s)	243, 247
NlaIII	CATG	1 cut(s)	37
NlaIV	GGNNCC	1 cut(s)	187
NmeAIII	GCCGAG	1 cut(s)	229
NspI	RCATGY	1 cut(s)	37
PcsI	WCGNNNNNNNCGW	1 cut(s)	256
PfeI	GAWTC	1 cut(s)	157
PkrI	GCNGC	1 cut(s)	136
Ple19I	CGATCG	1 cut(s)	250
PleI	GAGTC	2 cut(s)	17, 70
PpsI	GAGTC	2 cut(s)	17, 70
PspN4I	GGNNCC	1 cut(s)	187
PstI	CTGCAG	1 cut(s)	139
PvuI	CGATCG	1 cut(s)	250
RsaI	GTAC	1 cut(s)	187
RsaNI	GTAC	1 cut(s)	186
SaqAI	TTAA	1 cut(s)	72
SatI	GCNGC	1 cut(s)	135
Sau3AI	GATC	2 cut(s)	243, 247
SchI	GAGTC	2 cut(s)	17, 71
SetI	ASST	4 cut(s)	11, 47, 144, 191
SfcI	CTRYAG	1 cut(s)	135
SsiI	CCGC	1 cut(s)	268
TaqI	TCGA	1 cut(s)	246
TfiI	GAWTC	1 cut(s)	157
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TseI	GCWGC	1 cut(s)	134
TspDTI	ATGAA	1 cut(s)	209
XceI	RCATGY	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.