Rh7DG394000

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0005896
Physical Location & Seq
Forward (+)
54017192 .. 54020203
3012 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG394000.1

Sequence Viewer

Length: 399 bp
ATGGCGTGGCTATGGCGGTCCGGCGGCGGTCTGCAGATACCGGCAGGGCAGAACACTTGGCGGTCAAGCGGCGGTGGCCGTGGTGGGGATGGGCCAGGCTTGGCTGGAGGCTTATGGTATCAAGGTGTTATTGTAAATGAGAAGTTGCATTGGGTAATTGAGGACTACAATCTCGAGTTTGATGACGAGGATGATCCTATTGTTGTCTTTGATTTGGAGATGGAGGAGTTTCGGAGACTGTGGCTTCCATTTCCTAAGGTTGAAGGAGATAACAGTGTGAATTTCAATGTTGCGGTTTTTTGTAGTGAACGGTGTCTGTGTCTATGGCGTTATGGAAGTCTTGCTGCCTCTGGTTCAATTGATTTTTGGGTCATGGAAAGGTATGGAGACAATGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

132

Amino Acids

14.93

Weight (kDa)

4.34

Isoelectric Point (pI)

50.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 40 - 131 7.7e-07 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 7 cut(s) 16, 24, 27, 61, 69, 72, 293
AclWI GGATC 1 cut(s) 188
AcoI YGGCCR 1 cut(s) 76
AcsI RAATTY 1 cut(s) 280
AfiI CCNNNNNNNGG 1 cut(s) 85
AgsI TTSAA 3 cut(s) 263, 286, 357
AjnI CCWGG 1 cut(s) 94
Alw26I GTCTC 2 cut(s) 229, 381
AlwI GGATC 1 cut(s) 188
Ama87I CYCGRG 1 cut(s) 173
AoxI GGCC 2 cut(s) 76, 92
ApeKI GCWGC 1 cut(s) 344
ApoI RAATTY 1 cut(s) 280
AspS9I GGNCC 2 cut(s) 18, 92
AvaI CYCGRG 1 cut(s) 173
AvaII GGWCC 1 cut(s) 18
AxyI CCTNAGG 1 cut(s) 255
BbvI GCAGC 1 cut(s) 331
BccI CCATC 2 cut(s) 83, 214
BceAI ACGGC 1 cut(s) 63
BciT130I CCWGG 1 cut(s) 96
BcoDI GTCTC 2 cut(s) 229, 381
BfaI CTAG 1 cut(s) 397
BfmI CTRYAG 1 cut(s) 32
BisI GCNGC 3 cut(s) 25, 70, 345
BlsI GCNGC 3 cut(s) 26, 71, 346
Bme1390I CCNGG 1 cut(s) 96
Bme18I GGWCC 1 cut(s) 18
BmeT110I CYCGRG 1 cut(s) 173
BmgT120I GGNCC 2 cut(s) 18, 92
BmrFI CCNGG 1 cut(s) 96
BpmI CTGGAG 1 cut(s) 126
BsaJI CCNNGG 1 cut(s) 79
Bsc4I CCNNNNNNNGG 1 cut(s) 85
Bse118I RCCGGY 1 cut(s) 40
Bse21I CCTNAGG 1 cut(s) 255
BseBI CCWGG 1 cut(s) 96
BseDI CCNNGG 1 cut(s) 79
BseGI GGATG 2 cut(s) 94, 196
BseLI CCNNNNNNNGG 1 cut(s) 85
BseRI GAGGAG 1 cut(s) 239
BseXI GCAGC 1 cut(s) 331
BshFI GGCC 2 cut(s) 78, 94
BsiHKCI CYCGRG 1 cut(s) 173
BsiSI CCGG 2 cut(s) 21, 41
BslI CCNNNNNNNGG 1 cut(s) 85
BsmAI GTCTC 2 cut(s) 229, 381
BsnI GGCC 2 cut(s) 78, 94
BsoBI CYCGRG 1 cut(s) 173
Bsp143I GATC 1 cut(s) 193
BspACI CCGC 7 cut(s) 16, 24, 27, 61, 69, 72, 293
BspANI GGCC 2 cut(s) 78, 94
BspMAI CTGCAG 1 cut(s) 36
BspPI GGATC 1 cut(s) 188
BsrFI RCCGGY 1 cut(s) 40
BssAI RCCGGY 1 cut(s) 40
BssECI CCNNGG 1 cut(s) 79
BssMI GATC 1 cut(s) 193
Bst2UI CCWGG 1 cut(s) 96
Bst4CI ACNGT 3 cut(s) 240, 275, 312
BstDEI CTNAG 1 cut(s) 255
BstDSI CCRYGG 1 cut(s) 79
BstF5I GGATG 2 cut(s) 94, 196
BstKTI GATC 1 cut(s) 196
BstMAI GTCTC 2 cut(s) 229, 381
BstMBI GATC 1 cut(s) 193
BstMWI GCNNNNNNNGC 1 cut(s) 75
BstNI CCWGG 1 cut(s) 96
BstSCI CCNGG 1 cut(s) 94
BstSFI CTRYAG 1 cut(s) 32
BstV1I GCAGC 1 cut(s) 331
Bsu36I CCTNAGG 1 cut(s) 255
BsuRI GGCC 2 cut(s) 78, 94
BtgI CCRYGG 1 cut(s) 79
BtsCI GGATG 2 cut(s) 94, 196
BtsIMutI CAGTG 1 cut(s) 280
Cfr10I RCCGGY 1 cut(s) 40
Cfr13I GGNCC 2 cut(s) 18, 92
CpoI CGGWCCG 1 cut(s) 18
CspI CGGWCCG 1 cut(s) 18
CviAII CATG 1 cut(s) 373
CviJI RGCY 7 cut(s) 10, 78, 94, 99, 104, 111, 244
CviKI_1 RGCY 7 cut(s) 10, 78, 94, 99, 104, 111, 244
DdeI CTNAG 1 cut(s) 255
DpnI GATC 1 cut(s) 195
DpnII GATC 1 cut(s) 193
EaeI YGGCCR 1 cut(s) 76
Eco47I GGWCC 1 cut(s) 18
Eco81I CCTNAGG 1 cut(s) 255
Eco88I CYCGRG 1 cut(s) 173
EcoRII CCWGG 1 cut(s) 94
FaeI CATG 1 cut(s) 376
FaiI YATR 6 cut(s) 13, 115, 325, 333, 374, 384
FatI CATG 1 cut(s) 372
Fnu4HI GCNGC 3 cut(s) 25, 70, 345
FokI GGATG 2 cut(s) 101, 203
Fsp4HI GCNGC 3 cut(s) 25, 70, 345
FspBI CTAG 1 cut(s) 397
GluI GCNGC 3 cut(s) 25, 70, 345
GsuI CTGGAG 1 cut(s) 126
HaeIII GGCC 2 cut(s) 78, 94
HapII CCGG 2 cut(s) 21, 41
Hin1II CATG 1 cut(s) 376
HpaII CCGG 2 cut(s) 21, 41
Hpy166II GTNNAC 1 cut(s) 308
Hpy188I TCNGA 1 cut(s) 234
Hpy188III TCNNGA 1 cut(s) 173
Hpy8I GTNNAC 1 cut(s) 308
HpyAV CCTTC 1 cut(s) 257
HpyCH4III ACNGT 3 cut(s) 240, 275, 312
HpyCH4V TGCA 2 cut(s) 34, 148
HpyF10VI GCNNNNNNNGC 1 cut(s) 75
HpyF3I CTNAG 1 cut(s) 255
Hsp92II CATG 1 cut(s) 376
Kzo9I GATC 1 cut(s) 193
LpnPI CCDG 7 cut(s) 30, 34, 54, 81, 90, 108, 336
Lsp1109I GCAGC 1 cut(s) 331
MaeI CTAG 1 cut(s) 397
MalI GATC 1 cut(s) 195
MboI GATC 1 cut(s) 193
MfeI CAATTG 1 cut(s) 357
MluCI AATT 3 cut(s) 156, 280, 357
MnlI CCTC 5 cut(s) 101, 154, 181, 217, 358
MspI CCGG 2 cut(s) 21, 41
MspR9I CCNGG 1 cut(s) 96
MunI CAATTG 1 cut(s) 357
MvaI CCWGG 1 cut(s) 96
MwoI GCNNNNNNNGC 1 cut(s) 75
NdeII GATC 1 cut(s) 193
NlaIII CATG 1 cut(s) 376
PaeR7I CTCGAG 1 cut(s) 173
PkrI GCNGC 3 cut(s) 26, 71, 346
Psp6I CCWGG 1 cut(s) 94
PspGI CCWGG 1 cut(s) 94
PspPI GGNCC 2 cut(s) 18, 92
PstI CTGCAG 1 cut(s) 36
Rsr2I CGGWCCG 1 cut(s) 18
RsrII CGGWCCG 1 cut(s) 18
SatI GCNGC 3 cut(s) 25, 70, 345
Sau3AI GATC 1 cut(s) 193
Sau96I GGNCC 2 cut(s) 18, 92
ScrFI CCNGG 1 cut(s) 96
SetI ASST 3 cut(s) 127, 261, 383
SfcI CTRYAG 1 cut(s) 32
Sfr274I CTCGAG 1 cut(s) 173
SinI GGWCC 1 cut(s) 18
SlaI CTCGAG 1 cut(s) 173
SmlI CTYRAG 1 cut(s) 173
SmoI CTYRAG 1 cut(s) 173
Sse9I AATT 3 cut(s) 156, 280, 357
SsiI CCGC 7 cut(s) 16, 24, 27, 61, 69, 72, 293
SspMI CTAG 1 cut(s) 397
StyD4I CCNGG 1 cut(s) 94
TaaI ACNGT 3 cut(s) 240, 275, 312
TaqI TCGA 1 cut(s) 174
TasI AATT 3 cut(s) 156, 280, 357
TauI GCSGC 2 cut(s) 27, 72
TscAI CASTG 1 cut(s) 280
TseI GCWGC 1 cut(s) 344
TspRI CASTG 1 cut(s) 280
VpaK11BI GGWCC 1 cut(s) 18
XapI RAATTY 1 cut(s) 280
XhoI CTCGAG 1 cut(s) 173
XspI CTAG 1 cut(s) 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.